spaCy/spacy/tests/pipeline/test_spancat.py
Matthew Honnibal f9946154d9
Add SpanCategorizer component (#6747)
* Draft spancat model

* Add spancat model

* Add test for extract_spans

* Add extract_spans layer

* Upd extract_spans

* Add spancat model

* Add test for spancat model

* Upd spancat model

* Update spancat component

* Upd spancat

* Update spancat model

* Add quick spancat test

* Import SpanCategorizer

* Fix SpanCategorizer component

* Import SpanGroup

* Fix span extraction

* Fix import

* Fix import

* Upd model

* Update spancat models

* Add scoring, update defaults

* Update and add docs

* Fix type

* Update spacy/ml/extract_spans.py

* Auto-format and fix import

* Fix comment

* Fix type

* Fix type

* Update website/docs/api/spancategorizer.md

* Fix comment

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Better defense

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Fix labels list

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/ml/extract_spans.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/pipeline/spancat.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Set annotations during update

* Set annotations in spancat

* fix imports in test

* Update spacy/pipeline/spancat.py

* replace MaxoutLogistic with LinearLogistic

* fix config

* various small fixes

* remove set_annotations parameter in update

* use our beloved tupley format with recent support for doc.spans

* bugfix to allow renaming the default span_key (scores weren't showing up)

* use different key in docs example

* change defaults to better-working parameters from project (WIP)

* register spacy.extract_spans.v1 for legacy purposes

* Upd dev version so can build wheel

* layers instead of architectures for smaller building blocks

* Update website/docs/api/spancategorizer.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update website/docs/api/spancategorizer.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Include additional scores from overrides in combined score weights

* Parameterize spans key in scoring

Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so
that it's possible to evaluate multiple `spancat` components in the same
pipeline.

* Use the (intentionally very short) default spans key `sc` in the
  `SpanCategorizer`
* Adjust the default score weights to include the default key
* Adjust the scorer to use `spans_{spans_key}` as the prefix for the
  returned score
* Revert addition of `attr_name` argument to `score_spans` and adjust
  the key in the `getter` instead.

Note that for `spancat` components with a custom `span_key`, the score
weights currently need to be modified manually in
`[training.score_weights]` for them to be available during training. To
suppress the default score weights `spans_sc_p/r/f` during training, set
them to `null` in `[training.score_weights]`.

* Update website/docs/api/scorer.md

* Fix scorer for spans key containing underscore

* Increment version

* Add Spans to Evaluate CLI (#8439)

* Add Spans to Evaluate CLI

* Change to spans_key

* Add spans per_type output

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Fix spancat GPU issues (#8455)

* Fix GPU issues

* Require thinc >=8.0.6

* Switch to glorot_uniform_init

* Fix and test ngram suggester

* Include final ngram in doc for all sizes
* Fix ngrams for docs of the same length as ngram size
* Handle batches of docs that result in no ngrams
* Add tests

Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 12:35:27 +02:00

147 lines
4.1 KiB
Python

from numpy.testing import assert_equal
from spacy.language import Language
from spacy.training import Example
from spacy.util import fix_random_seed, registry
SPAN_KEY = "labeled_spans"
TRAIN_DATA = [
("Who is Shaka Khan?", {"spans": {SPAN_KEY: [(7, 17, "PERSON")]}}),
(
"I like London and Berlin.",
{"spans": {SPAN_KEY: [(7, 13, "LOC"), (18, 24, "LOC")]}},
),
]
def make_get_examples(nlp):
train_examples = []
for t in TRAIN_DATA:
eg = Example.from_dict(nlp.make_doc(t[0]), t[1])
train_examples.append(eg)
def get_examples():
return train_examples
return get_examples
def test_simple_train():
fix_random_seed(0)
nlp = Language()
spancat = nlp.add_pipe("spancat", config={"spans_key": SPAN_KEY})
get_examples = make_get_examples(nlp)
nlp.initialize(get_examples)
sgd = nlp.create_optimizer()
assert len(spancat.labels) != 0
for i in range(40):
losses = {}
nlp.update(list(get_examples()), losses=losses, drop=0.1, sgd=sgd)
doc = nlp("I like London and Berlin.")
assert doc.spans[spancat.key] == doc.spans[SPAN_KEY]
assert len(doc.spans[spancat.key]) == 2
assert doc.spans[spancat.key][0].text == "London"
scores = nlp.evaluate(get_examples())
assert f"spans_{SPAN_KEY}_f" in scores
assert scores[f"spans_{SPAN_KEY}_f"] == 1.0
def test_ngram_suggester(en_tokenizer):
# test different n-gram lengths
for size in [1, 2, 3]:
ngram_suggester = registry.misc.get("ngram_suggester.v1")(sizes=[size])
docs = [
en_tokenizer(text)
for text in [
"a",
"a b",
"a b c",
"a b c d",
"a b c d e",
"a " * 100,
]
]
ngrams = ngram_suggester(docs)
# span sizes are correct
for s in ngrams.data:
assert s[1] - s[0] == size
# spans are within docs
offset = 0
for i, doc in enumerate(docs):
spans = ngrams.dataXd[offset : offset + ngrams.lengths[i]]
spans_set = set()
for span in spans:
assert 0 <= span[0] < len(doc)
assert 0 < span[1] <= len(doc)
spans_set.add((span[0], span[1]))
# spans are unique
assert spans.shape[0] == len(spans_set)
offset += ngrams.lengths[i]
# the number of spans is correct
assert_equal(
ngrams.lengths,
[max(0, len(doc) - (size - 1)) for doc in docs]
)
# test 1-3-gram suggestions
ngram_suggester = registry.misc.get("ngram_suggester.v1")(sizes=[1, 2, 3])
docs = [
en_tokenizer(text) for text in ["a", "a b", "a b c", "a b c d", "a b c d e"]
]
ngrams = ngram_suggester(docs)
assert_equal(ngrams.lengths, [1, 3, 6, 9, 12])
assert_equal(
ngrams.data,
[
# doc 0
[0, 1],
# doc 1
[0, 1],
[1, 2],
[0, 2],
# doc 2
[0, 1],
[1, 2],
[2, 3],
[0, 2],
[1, 3],
[0, 3],
# doc 3
[0, 1],
[1, 2],
[2, 3],
[3, 4],
[0, 2],
[1, 3],
[2, 4],
[0, 3],
[1, 4],
# doc 4
[0, 1],
[1, 2],
[2, 3],
[3, 4],
[4, 5],
[0, 2],
[1, 3],
[2, 4],
[3, 5],
[0, 3],
[1, 4],
[2, 5],
],
)
# test some empty docs
ngram_suggester = registry.misc.get("ngram_suggester.v1")(sizes=[1])
docs = [en_tokenizer(text) for text in ["", "a", ""]]
ngrams = ngram_suggester(docs)
assert_equal(ngrams.lengths, [len(doc) for doc in docs])
# test all empty docs
ngram_suggester = registry.misc.get("ngram_suggester.v1")(sizes=[1])
docs = [en_tokenizer(text) for text in ["", "", ""]]
ngrams = ngram_suggester(docs)
assert_equal(ngrams.lengths, [len(doc) for doc in docs])