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https://github.com/explosion/spaCy.git
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657af5f91f
* 🚨 Ignore all existing Mypy errors * 🏗 Add Mypy check to CI * Add types-mock and types-requests as dev requirements * Add additional type ignore directives * Add types packages to dev-only list in reqs test * Add types-dataclasses for python 3.6 * Add ignore to pretrain * 🏷 Improve type annotation on `run_command` helper The `run_command` helper previously declared that it returned an `Optional[subprocess.CompletedProcess]`, but it isn't actually possible for the function to return `None`. These changes modify the type annotation of the `run_command` helper and remove all now-unnecessary `# type: ignore` directives. * 🔧 Allow variable type redefinition in limited contexts These changes modify how Mypy is configured to allow variables to have their type automatically redefined under certain conditions. The Mypy documentation contains the following example: ```python def process(items: List[str]) -> None: # 'items' has type List[str] items = [item.split() for item in items] # 'items' now has type List[List[str]] ... ``` This configuration change is especially helpful in reducing the number of `# type: ignore` directives needed to handle the common pattern of: * Accepting a filepath as a string * Overwriting the variable using `filepath = ensure_path(filepath)` These changes enable redefinition and remove all `# type: ignore` directives rendered redundant by this change. * 🏷 Add type annotation to converters mapping * 🚨 Fix Mypy error in convert CLI argument verification * 🏷 Improve type annotation on `resolve_dot_names` helper * 🏷 Add type annotations for `Vocab` attributes `strings` and `vectors` * 🏷 Add type annotations for more `Vocab` attributes * 🏷 Add loose type annotation for gold data compilation * 🏷 Improve `_format_labels` type annotation * 🏷 Fix `get_lang_class` type annotation * 🏷 Loosen return type of `Language.evaluate` * 🏷 Don't accept `Scorer` in `handle_scores_per_type` * 🏷 Add `string_to_list` overloads * 🏷 Fix non-Optional command-line options * 🙈 Ignore redefinition of `wandb_logger` in `loggers.py` * ➕ Install `typing_extensions` in Python 3.8+ The `typing_extensions` package states that it should be used when "writing code that must be compatible with multiple Python versions". Since SpaCy needs to support multiple Python versions, it should be used when newer `typing` module members are required. One example of this is `Literal`, which is available starting with Python 3.8. Previously SpaCy tried to import `Literal` from `typing`, falling back to `typing_extensions` if the import failed. However, Mypy doesn't seem to be able to understand what `Literal` means when the initial import means. Therefore, these changes modify how `compat` imports `Literal` by always importing it from `typing_extensions`. These changes also modify how `typing_extensions` is installed, so that it is a requirement for all Python versions, including those greater than or equal to 3.8. * 🏷 Improve type annotation for `Language.pipe` These changes add a missing overload variant to the type signature of `Language.pipe`. Additionally, the type signature is enhanced to allow type checkers to differentiate between the two overload variants based on the `as_tuple` parameter. Fixes #8772 * ➖ Don't install `typing-extensions` in Python 3.8+ After more detailed analysis of how to implement Python version-specific type annotations using SpaCy, it has been determined that by branching on a comparison against `sys.version_info` can be statically analyzed by Mypy well enough to enable us to conditionally use `typing_extensions.Literal`. This means that we no longer need to install `typing_extensions` for Python versions greater than or equal to 3.8! 🎉 These changes revert previous changes installing `typing-extensions` regardless of Python version and modify how we import the `Literal` type to ensure that Mypy treats it properly. * resolve mypy errors for Strict pydantic types * refactor code to avoid missing return statement * fix types of convert CLI command * avoid list-set confustion in debug_data * fix typo and formatting * small fixes to avoid type ignores * fix types in profile CLI command and make it more efficient * type fixes in projects CLI * put one ignore back * type fixes for render * fix render types - the sequel * fix BaseDefault in language definitions * fix type of noun_chunks iterator - yields tuple instead of span * fix types in language-specific modules * 🏷 Expand accepted inputs of `get_string_id` `get_string_id` accepts either a string (in which case it returns its ID) or an ID (in which case it immediately returns the ID). These changes extend the type annotation of `get_string_id` to indicate that it can accept either strings or IDs. * 🏷 Handle override types in `combine_score_weights` The `combine_score_weights` function allows users to pass an `overrides` mapping to override data extracted from the `weights` argument. Since it allows `Optional` dictionary values, the return value may also include `Optional` dictionary values. These changes update the type annotations for `combine_score_weights` to reflect this fact. * 🏷 Fix tokenizer serialization method signatures in `DummyTokenizer` * 🏷 Fix redefinition of `wandb_logger` These changes fix the redefinition of `wandb_logger` by giving a separate name to each `WandbLogger` version. For backwards-compatibility, `spacy.train` still exports `wandb_logger_v3` as `wandb_logger` for now. * more fixes for typing in language * type fixes in model definitions * 🏷 Annotate `_RandomWords.probs` as `NDArray` * 🏷 Annotate `tok2vec` layers to help Mypy * 🐛 Fix `_RandomWords.probs` type annotations for Python 3.6 Also remove an import that I forgot to move to the top of the module 😅 * more fixes for matchers and other pipeline components * quick fix for entity linker * fixing types for spancat, textcat, etc * bugfix for tok2vec * type annotations for scorer * add runtime_checkable for Protocol * type and import fixes in tests * mypy fixes for training utilities * few fixes in util * fix import * 🐵 Remove unused `# type: ignore` directives * 🏷 Annotate `Language._components` * 🏷 Annotate `spacy.pipeline.Pipe` * add doc as property to span.pyi * small fixes and cleanup * explicit type annotations instead of via comment Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: svlandeg <svlandeg@github.com>
92 lines
3.4 KiB
Python
92 lines
3.4 KiB
Python
from typing import Optional, Sequence, Union, Iterator
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import tqdm
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from pathlib import Path
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import srsly
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import cProfile
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import pstats
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import sys
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import itertools
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from wasabi import msg, Printer
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import typer
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from ._util import app, debug_cli, Arg, Opt, NAME
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from ..language import Language
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from ..util import load_model
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@debug_cli.command("profile")
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@app.command("profile", hidden=True)
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def profile_cli(
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# fmt: off
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ctx: typer.Context, # This is only used to read current calling context
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model: str = Arg(..., help="Trained pipeline to load"),
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inputs: Optional[Path] = Arg(None, help="Location of input file. '-' for stdin.", exists=True, allow_dash=True),
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n_texts: int = Opt(10000, "--n-texts", "-n", help="Maximum number of texts to use if available"),
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# fmt: on
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):
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"""
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Profile which functions take the most time in a spaCy pipeline.
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Input should be formatted as one JSON object per line with a key "text".
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It can either be provided as a JSONL file, or be read from sys.sytdin.
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If no input file is specified, the IMDB dataset is loaded via Thinc.
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DOCS: https://spacy.io/api/cli#debug-profile
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"""
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if ctx.parent.command.name == NAME: # type: ignore[union-attr] # called as top-level command
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msg.warn(
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"The profile command is now available via the 'debug profile' "
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"subcommand. You can run python -m spacy debug --help for an "
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"overview of the other available debugging commands."
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)
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profile(model, inputs=inputs, n_texts=n_texts)
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def profile(model: str, inputs: Optional[Path] = None, n_texts: int = 10000) -> None:
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if inputs is not None:
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texts = _read_inputs(inputs, msg)
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texts = list(itertools.islice(texts, n_texts))
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if inputs is None:
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try:
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import ml_datasets
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except ImportError:
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msg.fail(
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"This command, when run without an input file, "
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"requires the ml_datasets library to be installed: "
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"pip install ml_datasets",
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exits=1,
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)
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with msg.loading("Loading IMDB dataset via ml_datasets..."):
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imdb_train, _ = ml_datasets.imdb(train_limit=n_texts, dev_limit=0)
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texts, _ = zip(*imdb_train)
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msg.info(f"Loaded IMDB dataset and using {n_texts} examples")
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with msg.loading(f"Loading pipeline '{model}'..."):
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nlp = load_model(model)
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msg.good(f"Loaded pipeline '{model}'")
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cProfile.runctx("parse_texts(nlp, texts)", globals(), locals(), "Profile.prof")
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s = pstats.Stats("Profile.prof")
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msg.divider("Profile stats")
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s.strip_dirs().sort_stats("time").print_stats()
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def parse_texts(nlp: Language, texts: Sequence[str]) -> None:
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for doc in nlp.pipe(tqdm.tqdm(texts), batch_size=16):
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pass
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def _read_inputs(loc: Union[Path, str], msg: Printer) -> Iterator[str]:
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if loc == "-":
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msg.info("Reading input from sys.stdin")
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file_ = sys.stdin
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file_ = (line.encode("utf8") for line in file_)
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else:
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input_path = Path(loc)
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if not input_path.exists() or not input_path.is_file():
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msg.fail("Not a valid input data file", loc, exits=1)
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msg.info(f"Using data from {input_path.parts[-1]}")
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file_ = input_path.open() # type: ignore[assignment]
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for line in file_:
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data = srsly.json_loads(line)
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text = data["text"]
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yield text
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