mirror of
https://github.com/explosion/spaCy.git
synced 2024-12-30 20:06:30 +03:00
6f5e308d17
* Support a cfg field in transition system * Make NER 'has gold' check use right alignment for span * Pass 'negative_samples_key' property into NER transition system * Add field for negative samples to NER transition system * Check neg_key in NER has_gold * Support negative examples in NER oracle * Test for negative examples in NER * Fix name of config variable in NER * Remove vestiges of old-style partial annotation * Remove obsolete tests * Add comment noting lack of support for negative samples in parser * Additions to "neg examples" PR (#8201) * add custom error and test for deprecated format * add test for unlearning an entity * add break also for Begin's cost * add negative_samples_key property on Parser * rename * extend docs & fix some older docs issues * add subclass constructors, clean up tests, fix docs * add flaky test with ValueError if gold parse was not found * remove ValueError if n_gold == 0 * fix docstring * Hack in environment variables to try out training * Remove hack * Remove NER hack, and support 'negative O' samples * Fix O oracle * Fix transition parser * Remove 'not O' from oracle * Fix NER oracle * check for spans in both gold.ents and gold.spans and raise if so, to prevent memory access violation * use set instead of list in consistency check Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
332 lines
12 KiB
Cython
332 lines
12 KiB
Cython
# cython: infer_types=True, profile=True, binding=True
|
|
from collections import defaultdict
|
|
from typing import Optional, Iterable
|
|
from thinc.api import Model, Config
|
|
|
|
from ._parser_internals.transition_system import TransitionSystem
|
|
from .transition_parser cimport Parser
|
|
from ._parser_internals.arc_eager cimport ArcEager
|
|
|
|
from .functions import merge_subtokens
|
|
from ..language import Language
|
|
from ._parser_internals import nonproj
|
|
from ._parser_internals.nonproj import DELIMITER
|
|
from ..scorer import Scorer
|
|
from ..training import validate_examples
|
|
|
|
|
|
default_model_config = """
|
|
[model]
|
|
@architectures = "spacy.TransitionBasedParser.v2"
|
|
state_type = "parser"
|
|
extra_state_tokens = false
|
|
hidden_width = 64
|
|
maxout_pieces = 2
|
|
use_upper = true
|
|
|
|
[model.tok2vec]
|
|
@architectures = "spacy.HashEmbedCNN.v2"
|
|
pretrained_vectors = null
|
|
width = 96
|
|
depth = 4
|
|
embed_size = 2000
|
|
window_size = 1
|
|
maxout_pieces = 3
|
|
subword_features = true
|
|
"""
|
|
DEFAULT_PARSER_MODEL = Config().from_str(default_model_config)["model"]
|
|
|
|
|
|
@Language.factory(
|
|
"parser",
|
|
assigns=["token.dep", "token.head", "token.is_sent_start", "doc.sents"],
|
|
default_config={
|
|
"moves": None,
|
|
"update_with_oracle_cut_size": 100,
|
|
"learn_tokens": False,
|
|
"min_action_freq": 30,
|
|
"model": DEFAULT_PARSER_MODEL,
|
|
},
|
|
default_score_weights={
|
|
"dep_uas": 0.5,
|
|
"dep_las": 0.5,
|
|
"dep_las_per_type": None,
|
|
"sents_p": None,
|
|
"sents_r": None,
|
|
"sents_f": 0.0,
|
|
},
|
|
)
|
|
def make_parser(
|
|
nlp: Language,
|
|
name: str,
|
|
model: Model,
|
|
moves: Optional[TransitionSystem],
|
|
update_with_oracle_cut_size: int,
|
|
learn_tokens: bool,
|
|
min_action_freq: int
|
|
):
|
|
"""Create a transition-based DependencyParser component. The dependency parser
|
|
jointly learns sentence segmentation and labelled dependency parsing, and can
|
|
optionally learn to merge tokens that had been over-segmented by the tokenizer.
|
|
|
|
The parser uses a variant of the non-monotonic arc-eager transition-system
|
|
described by Honnibal and Johnson (2014), with the addition of a "break"
|
|
transition to perform the sentence segmentation. Nivre's pseudo-projective
|
|
dependency transformation is used to allow the parser to predict
|
|
non-projective parses.
|
|
|
|
The parser is trained using an imitation learning objective. The parser follows
|
|
the actions predicted by the current weights, and at each state, determines
|
|
which actions are compatible with the optimal parse that could be reached
|
|
from the current state. The weights such that the scores assigned to the
|
|
set of optimal actions is increased, while scores assigned to other
|
|
actions are decreased. Note that more than one action may be optimal for
|
|
a given state.
|
|
|
|
model (Model): The model for the transition-based parser. The model needs
|
|
to have a specific substructure of named components --- see the
|
|
spacy.ml.tb_framework.TransitionModel for details.
|
|
moves (Optional[TransitionSystem]): This defines how the parse-state is created,
|
|
updated and evaluated. If 'moves' is None, a new instance is
|
|
created with `self.TransitionSystem()`. Defaults to `None`.
|
|
update_with_oracle_cut_size (int): During training, cut long sequences into
|
|
shorter segments by creating intermediate states based on the gold-standard
|
|
history. The model is not very sensitive to this parameter, so you usually
|
|
won't need to change it. 100 is a good default.
|
|
learn_tokens (bool): Whether to learn to merge subtokens that are split
|
|
relative to the gold standard. Experimental.
|
|
min_action_freq (int): The minimum frequency of labelled actions to retain.
|
|
Rarer labelled actions have their label backed-off to "dep". While this
|
|
primarily affects the label accuracy, it can also affect the attachment
|
|
structure, as the labels are used to represent the pseudo-projectivity
|
|
transformation.
|
|
"""
|
|
return DependencyParser(
|
|
nlp.vocab,
|
|
model,
|
|
name,
|
|
moves=moves,
|
|
update_with_oracle_cut_size=update_with_oracle_cut_size,
|
|
multitasks=[],
|
|
learn_tokens=learn_tokens,
|
|
min_action_freq=min_action_freq,
|
|
beam_width=1,
|
|
beam_density=0.0,
|
|
beam_update_prob=0.0,
|
|
# At some point in the future we can try to implement support for
|
|
# partial annotations, perhaps only in the beam objective.
|
|
incorrect_spans_key=None
|
|
)
|
|
|
|
@Language.factory(
|
|
"beam_parser",
|
|
assigns=["token.dep", "token.head", "token.is_sent_start", "doc.sents"],
|
|
default_config={
|
|
"beam_width": 8,
|
|
"beam_density": 0.01,
|
|
"beam_update_prob": 0.5,
|
|
"moves": None,
|
|
"update_with_oracle_cut_size": 100,
|
|
"learn_tokens": False,
|
|
"min_action_freq": 30,
|
|
"model": DEFAULT_PARSER_MODEL,
|
|
},
|
|
default_score_weights={
|
|
"dep_uas": 0.5,
|
|
"dep_las": 0.5,
|
|
"dep_las_per_type": None,
|
|
"sents_p": None,
|
|
"sents_r": None,
|
|
"sents_f": 0.0,
|
|
},
|
|
)
|
|
def make_beam_parser(
|
|
nlp: Language,
|
|
name: str,
|
|
model: Model,
|
|
moves: Optional[TransitionSystem],
|
|
update_with_oracle_cut_size: int,
|
|
learn_tokens: bool,
|
|
min_action_freq: int,
|
|
beam_width: int,
|
|
beam_density: float,
|
|
beam_update_prob: float,
|
|
):
|
|
"""Create a transition-based DependencyParser component that uses beam-search.
|
|
The dependency parser jointly learns sentence segmentation and labelled
|
|
dependency parsing, and can optionally learn to merge tokens that had been
|
|
over-segmented by the tokenizer.
|
|
|
|
The parser uses a variant of the non-monotonic arc-eager transition-system
|
|
described by Honnibal and Johnson (2014), with the addition of a "break"
|
|
transition to perform the sentence segmentation. Nivre's pseudo-projective
|
|
dependency transformation is used to allow the parser to predict
|
|
non-projective parses.
|
|
|
|
The parser is trained using a global objective. That is, it learns to assign
|
|
probabilities to whole parses.
|
|
|
|
model (Model): The model for the transition-based parser. The model needs
|
|
to have a specific substructure of named components --- see the
|
|
spacy.ml.tb_framework.TransitionModel for details.
|
|
moves (Optional[TransitionSystem]): This defines how the parse-state is created,
|
|
updated and evaluated. If 'moves' is None, a new instance is
|
|
created with `self.TransitionSystem()`. Defaults to `None`.
|
|
update_with_oracle_cut_size (int): During training, cut long sequences into
|
|
shorter segments by creating intermediate states based on the gold-standard
|
|
history. The model is not very sensitive to this parameter, so you usually
|
|
won't need to change it. 100 is a good default.
|
|
beam_width (int): The number of candidate analyses to maintain.
|
|
beam_density (float): The minimum ratio between the scores of the first and
|
|
last candidates in the beam. This allows the parser to avoid exploring
|
|
candidates that are too far behind. This is mostly intended to improve
|
|
efficiency, but it can also improve accuracy as deeper search is not
|
|
always better.
|
|
beam_update_prob (float): The chance of making a beam update, instead of a
|
|
greedy update. Greedy updates are an approximation for the beam updates,
|
|
and are faster to compute.
|
|
learn_tokens (bool): Whether to learn to merge subtokens that are split
|
|
relative to the gold standard. Experimental.
|
|
min_action_freq (int): The minimum frequency of labelled actions to retain.
|
|
Rarer labelled actions have their label backed-off to "dep". While this
|
|
primarily affects the label accuracy, it can also affect the attachment
|
|
structure, as the labels are used to represent the pseudo-projectivity
|
|
transformation.
|
|
"""
|
|
return DependencyParser(
|
|
nlp.vocab,
|
|
model,
|
|
name,
|
|
moves=moves,
|
|
update_with_oracle_cut_size=update_with_oracle_cut_size,
|
|
beam_width=beam_width,
|
|
beam_density=beam_density,
|
|
beam_update_prob=beam_update_prob,
|
|
multitasks=[],
|
|
learn_tokens=learn_tokens,
|
|
min_action_freq=min_action_freq,
|
|
# At some point in the future we can try to implement support for
|
|
# partial annotations, perhaps only in the beam objective.
|
|
incorrect_spans_key=None
|
|
)
|
|
|
|
|
|
cdef class DependencyParser(Parser):
|
|
"""Pipeline component for dependency parsing.
|
|
|
|
DOCS: https://spacy.io/api/dependencyparser
|
|
"""
|
|
TransitionSystem = ArcEager
|
|
|
|
def __init__(
|
|
self,
|
|
vocab,
|
|
model,
|
|
name="parser",
|
|
moves=None,
|
|
*,
|
|
update_with_oracle_cut_size=100,
|
|
min_action_freq=30,
|
|
learn_tokens=False,
|
|
beam_width=1,
|
|
beam_density=0.0,
|
|
beam_update_prob=0.0,
|
|
multitasks=tuple(),
|
|
incorrect_spans_key=None,
|
|
):
|
|
"""Create a DependencyParser.
|
|
"""
|
|
super().__init__(
|
|
vocab,
|
|
model,
|
|
name,
|
|
moves,
|
|
update_with_oracle_cut_size=update_with_oracle_cut_size,
|
|
min_action_freq=min_action_freq,
|
|
learn_tokens=learn_tokens,
|
|
beam_width=beam_width,
|
|
beam_density=beam_density,
|
|
beam_update_prob=beam_update_prob,
|
|
multitasks=multitasks,
|
|
incorrect_spans_key=incorrect_spans_key,
|
|
)
|
|
|
|
@property
|
|
def postprocesses(self):
|
|
output = [nonproj.deprojectivize]
|
|
if self.cfg.get("learn_tokens") is True:
|
|
output.append(merge_subtokens)
|
|
return tuple(output)
|
|
|
|
def add_multitask_objective(self, mt_component):
|
|
self._multitasks.append(mt_component)
|
|
|
|
def init_multitask_objectives(self, get_examples, nlp=None, **cfg):
|
|
# TODO: transfer self.model.get_ref("tok2vec") to the multitask's model ?
|
|
for labeller in self._multitasks:
|
|
labeller.model.set_dim("nO", len(self.labels))
|
|
if labeller.model.has_ref("output_layer"):
|
|
labeller.model.get_ref("output_layer").set_dim("nO", len(self.labels))
|
|
labeller.initialize(get_examples, nlp=nlp)
|
|
|
|
@property
|
|
def labels(self):
|
|
labels = set()
|
|
# Get the labels from the model by looking at the available moves
|
|
for move in self.move_names:
|
|
if "-" in move:
|
|
label = move.split("-")[1]
|
|
if DELIMITER in label:
|
|
label = label.split(DELIMITER)[1]
|
|
labels.add(label)
|
|
return tuple(sorted(labels))
|
|
|
|
def score(self, examples, **kwargs):
|
|
"""Score a batch of examples.
|
|
|
|
examples (Iterable[Example]): The examples to score.
|
|
RETURNS (Dict[str, Any]): The scores, produced by Scorer.score_spans
|
|
and Scorer.score_deps.
|
|
|
|
DOCS: https://spacy.io/api/dependencyparser#score
|
|
"""
|
|
def has_sents(doc):
|
|
return doc.has_annotation("SENT_START")
|
|
|
|
validate_examples(examples, "DependencyParser.score")
|
|
def dep_getter(token, attr):
|
|
dep = getattr(token, attr)
|
|
dep = token.vocab.strings.as_string(dep).lower()
|
|
return dep
|
|
results = {}
|
|
results.update(Scorer.score_spans(examples, "sents", has_annotation=has_sents, **kwargs))
|
|
kwargs.setdefault("getter", dep_getter)
|
|
kwargs.setdefault("ignore_labels", ("p", "punct"))
|
|
results.update(Scorer.score_deps(examples, "dep", **kwargs))
|
|
del results["sents_per_type"]
|
|
return results
|
|
|
|
def scored_parses(self, beams):
|
|
"""Return two dictionaries with scores for each beam/doc that was processed:
|
|
one containing (i, head) keys, and another containing (i, label) keys.
|
|
"""
|
|
head_scores = []
|
|
label_scores = []
|
|
for beam in beams:
|
|
score_head_dict = defaultdict(float)
|
|
score_label_dict = defaultdict(float)
|
|
for score, parses in self.moves.get_beam_parses(beam):
|
|
for head, i, label in parses:
|
|
score_head_dict[(i, head)] += score
|
|
score_label_dict[(i, label)] += score
|
|
head_scores.append(score_head_dict)
|
|
label_scores.append(score_label_dict)
|
|
return head_scores, label_scores
|
|
|
|
def _ensure_labels_are_added(self, docs):
|
|
# This gives the parser a chance to add labels it's missing for a batch
|
|
# of documents. However, this isn't desirable for the dependency parser,
|
|
# because we instead have a label frequency cut-off and back off rare
|
|
# labels to 'dep'.
|
|
pass
|