spaCy/spacy/matcher.pyx
Ines Montani d33953037e
💫 Port master changes over to develop (#2979)
* Create aryaprabhudesai.md (#2681)

* Update _install.jade (#2688)

Typo fix: "models" -> "model"

* Add FAC to spacy.explain (resolves #2706)

* Remove docstrings for deprecated arguments (see #2703)

* When calling getoption() in conftest.py, pass a default option (#2709)

* When calling getoption() in conftest.py, pass a default option

This is necessary to allow testing an installed spacy by running:

  pytest --pyargs spacy

* Add contributor agreement

* update bengali token rules for hyphen and digits (#2731)

* Less norm computations in token similarity (#2730)

* Less norm computations in token similarity

* Contributor agreement

* Remove ')' for clarity (#2737)

Sorry, don't mean to be nitpicky, I just noticed this when going through the CLI and thought it was a quick fix. That said, if this was intention than please let me know.

* added contributor agreement for mbkupfer (#2738)

* Basic support for Telugu language (#2751)

* Lex _attrs for polish language (#2750)

* Signed spaCy contributor agreement

* Added polish version of english lex_attrs

* Introduces a bulk merge function, in order to solve issue #653 (#2696)

* Fix comment

* Introduce bulk merge to increase performance on many span merges

* Sign contributor agreement

* Implement pull request suggestions

* Describe converters more explicitly (see #2643)

* Add multi-threading note to Language.pipe (resolves #2582) [ci skip]

* Fix formatting

* Fix dependency scheme docs (closes #2705) [ci skip]

* Don't set stop word in example (closes #2657) [ci skip]

* Add words to portuguese language _num_words (#2759)

* Add words to portuguese language _num_words

* Add words to portuguese language _num_words

* Update Indonesian model (#2752)

* adding e-KTP in tokenizer exceptions list

* add exception token

* removing lines with containing space as it won't matter since we use .split() method in the end, added new tokens in exception

* add tokenizer exceptions list

* combining base_norms with norm_exceptions

* adding norm_exception

* fix double key in lemmatizer

* remove unused import on punctuation.py

* reformat stop_words to reduce number of lines, improve readibility

* updating tokenizer exception

* implement is_currency for lang/id

* adding orth_first_upper in tokenizer_exceptions

* update the norm_exception list

* remove bunch of abbreviations

* adding contributors file

* Fixed spaCy+Keras example (#2763)

* bug fixes in keras example

* created contributor agreement

* Adding French hyphenated first name (#2786)

* Fix typo (closes #2784)

* Fix typo (#2795) [ci skip]

Fixed typo on line 6 "regcognizer --> recognizer"

* Adding basic support for Sinhala language. (#2788)

* adding Sinhala language package, stop words, examples and lex_attrs.

* Adding contributor agreement

* Updating contributor agreement

* Also include lowercase norm exceptions

* Fix error (#2802)

* Fix error
ValueError: cannot resize an array that references or is referenced
by another array in this way.  Use the resize function

* added spaCy Contributor Agreement

* Add charlax's contributor agreement (#2805)

* agreement of contributor, may I introduce a tiny pl languge contribution (#2799)

* Contributors agreement

* Contributors agreement

* Contributors agreement

* Add jupyter=True to displacy.render in documentation (#2806)

* Revert "Also include lowercase norm exceptions"

This reverts commit 70f4e8adf3.

* Remove deprecated encoding argument to msgpack

* Set up dependency tree pattern matching skeleton (#2732)

* Fix bug when too many entity types. Fixes #2800

* Fix Python 2 test failure

* Require older msgpack-numpy

* Restore encoding arg on msgpack-numpy

* Try to fix version pin for msgpack-numpy

* Update Portuguese Language (#2790)

* Add words to portuguese language _num_words

* Add words to portuguese language _num_words

* Portuguese - Add/remove stopwords, fix tokenizer, add currency symbols

* Extended punctuation and norm_exceptions in the Portuguese language

* Correct error in spacy universe docs concerning spacy-lookup (#2814)

* Update Keras Example for (Parikh et al, 2016) implementation  (#2803)

* bug fixes in keras example

* created contributor agreement

* baseline for Parikh model

* initial version of parikh 2016 implemented

* tested asymmetric models

* fixed grevious error in normalization

* use standard SNLI test file

* begin to rework parikh example

* initial version of running example

* start to document the new version

* start to document the new version

* Update Decompositional Attention.ipynb

* fixed calls to similarity

* updated the README

* import sys package duh

* simplified indexing on mapping word to IDs

* stupid python indent error

* added code from https://github.com/tensorflow/tensorflow/issues/3388 for tf bug workaround

* Fix typo (closes #2815) [ci skip]

* Update regex version dependency

* Set version to 2.0.13.dev3

* Skip seemingly problematic test

* Remove problematic test

* Try previous version of regex

* Revert "Remove problematic test"

This reverts commit bdebbef455.

* Unskip test

* Try older version of regex

* 💫 Update training examples and use minibatching (#2830)

<!--- Provide a general summary of your changes in the title. -->

## Description
Update the training examples in `/examples/training` to show usage of spaCy's `minibatch` and `compounding` helpers ([see here](https://spacy.io/usage/training#tips-batch-size) for details). The lack of batching in the examples has caused some confusion in the past, especially for beginners who would copy-paste the examples, update them with large training sets and experienced slow and unsatisfying results.

### Types of change
enhancements

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Visual C++ link updated (#2842) (closes #2841) [ci skip]

* New landing page

* Add contribution agreement

* Correcting lang/ru/examples.py (#2845)

* Correct some grammatical inaccuracies in lang\ru\examples.py; filled Contributor Agreement

* Correct some grammatical inaccuracies in lang\ru\examples.py

* Move contributor agreement to separate file

* Set version to 2.0.13.dev4

* Add Persian(Farsi) language support (#2797)

* Also include lowercase norm exceptions

* Remove in favour of https://github.com/explosion/spaCy/graphs/contributors

* Rule-based French Lemmatizer (#2818)

<!--- Provide a general summary of your changes in the title. -->

## Description
<!--- Use this section to describe your changes. If your changes required
testing, include information about the testing environment and the tests you
ran. If your test fixes a bug reported in an issue, don't forget to include the
issue number. If your PR is still a work in progress, that's totally fine – just
include a note to let us know. -->

Add a rule-based French Lemmatizer following the english one and the excellent PR for [greek language optimizations](https://github.com/explosion/spaCy/pull/2558) to adapt the Lemmatizer class.

### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->

- Lemma dictionary used can be found [here](http://infolingu.univ-mlv.fr/DonneesLinguistiques/Dictionnaires/telechargement.html), I used the XML version.
- Add several files containing exhaustive list of words for each part of speech 
- Add some lemma rules
- Add POS that are not checked in the standard Lemmatizer, i.e PRON, DET, ADV and AUX
- Modify the Lemmatizer class to check in lookup table as a last resort if POS not mentionned
- Modify the lemmatize function to check in lookup table as a last resort
- Init files are updated so the model can support all the functionalities mentioned above
- Add words to tokenizer_exceptions_list.py in respect to regex used in tokenizer_exceptions.py

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [X] I have submitted the spaCy Contributor Agreement.
- [X] I ran the tests, and all new and existing tests passed.
- [X] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Set version to 2.0.13

* Fix formatting and consistency

* Update docs for new version [ci skip]

* Increment version [ci skip]

* Add info on wheels [ci skip]

* Adding "This is a sentence" example to Sinhala (#2846)

* Add wheels badge

* Update badge [ci skip]

* Update README.rst [ci skip]

* Update murmurhash pin

* Increment version to 2.0.14.dev0

* Update GPU docs for v2.0.14

* Add wheel to setup_requires

* Import prefer_gpu and require_gpu functions from Thinc

* Add tests for prefer_gpu() and require_gpu()

* Update requirements and setup.py

* Workaround bug in thinc require_gpu

* Set version to v2.0.14

* Update push-tag script

* Unhack prefer_gpu

* Require thinc 6.10.6

* Update prefer_gpu and require_gpu docs [ci skip]

* Fix specifiers for GPU

* Set version to 2.0.14.dev1

* Set version to 2.0.14

* Update Thinc version pin

* Increment version

* Fix msgpack-numpy version pin

* Increment version

* Update version to 2.0.16

* Update version [ci skip]

* Redundant ')' in the Stop words' example (#2856)

<!--- Provide a general summary of your changes in the title. -->

## Description
<!--- Use this section to describe your changes. If your changes required
testing, include information about the testing environment and the tests you
ran. If your test fixes a bug reported in an issue, don't forget to include the
issue number. If your PR is still a work in progress, that's totally fine – just
include a note to let us know. -->

### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [ ] I have submitted the spaCy Contributor Agreement.
- [ ] I ran the tests, and all new and existing tests passed.
- [ ] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Documentation improvement regarding joblib and SO (#2867)

Some documentation improvements

## Description
1. Fixed the dead URL to joblib
2. Fixed Stack Overflow brand name (with space)

### Types of change
Documentation

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* raise error when setting overlapping entities as doc.ents (#2880)

* Fix out-of-bounds access in NER training

The helper method state.B(1) gets the index of the first token of the
buffer, or -1 if no such token exists. Normally this is safe because we
pass this to functions like state.safe_get(), which returns an empty
token. Here we used it directly as an array index, which is not okay!

This error may have been the cause of out-of-bounds access errors during
training. Similar errors may still be around, so much be hunted down.
Hunting this one down took a long time...I printed out values across
training runs and diffed, looking for points of divergence between
runs, when no randomness should be allowed.

* Change PyThaiNLP Url (#2876)

* Fix missing comma

* Add example showing a fix-up rule for space entities

* Set version to 2.0.17.dev0

* Update regex version

* Revert "Update regex version"

This reverts commit 62358dd867.

* Try setting older regex version, to align with conda

* Set version to 2.0.17

* Add spacy-js to universe [ci-skip]

* Add spacy-raspberry to universe (closes #2889)

* Add script to validate universe json [ci skip]

* Removed space in docs + added contributor indo (#2909)

* - removed unneeded space in documentation

* - added contributor info

* Allow input text of length up to max_length, inclusive (#2922)

* Include universe spec for spacy-wordnet component (#2919)

* feat: include universe spec for spacy-wordnet component

* chore: include spaCy contributor agreement

* Minor formatting changes [ci skip]

* Fix image [ci skip]

Twitter URL doesn't work on live site

* Check if the word is in one of the regular lists specific to each POS (#2886)

* 💫 Create random IDs for SVGs to prevent ID clashes (#2927)

Resolves #2924.

## Description
Fixes problem where multiple visualizations in Jupyter notebooks would have clashing arc IDs, resulting in weirdly positioned arc labels. Generating a random ID prefix so even identical parses won't receive the same IDs for consistency (even if effect of ID clash isn't noticable here.)

### Types of change
bug fix

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Fix typo [ci skip]

* fixes symbolic link on py3 and windows (#2949)

* fixes symbolic link on py3 and windows
during setup of spacy using command
python -m spacy link en_core_web_sm en
closes #2948

* Update spacy/compat.py

Co-Authored-By: cicorias <cicorias@users.noreply.github.com>

* Fix formatting

* Update universe [ci skip]

* Catalan Language Support (#2940)

* Catalan language Support

* Ddding Catalan to documentation

* Sort languages alphabetically [ci skip]

* Update tests for pytest 4.x (#2965)

<!--- Provide a general summary of your changes in the title. -->

## Description
- [x] Replace marks in params for pytest 4.0 compat ([see here](https://docs.pytest.org/en/latest/deprecations.html#marks-in-pytest-mark-parametrize))
- [x] Un-xfail passing tests (some fixes in a recent update resolved a bunch of issues, but tests were apparently never updated here)

### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Fix regex pin to harmonize with conda (#2964)

* Update README.rst

* Fix bug where Vocab.prune_vector did not use 'batch_size' (#2977)

Fixes #2976

* Fix typo

* Fix typo

* Remove duplicate file

* Require thinc 7.0.0.dev2

Fixes bug in gpu_ops that would use cupy instead of numpy on CPU

* Add missing import

* Fix error IDs

* Fix tests
2018-11-29 16:30:29 +01:00

1051 lines
37 KiB
Cython

# cython: infer_types=True
# cython: profile=True
from __future__ import unicode_literals
from libcpp.vector cimport vector
from libc.stdint cimport int32_t, uint64_t, uint16_t
from preshed.maps cimport PreshMap
from cymem.cymem cimport Pool
from murmurhash.mrmr cimport hash64
from .typedefs cimport attr_t, hash_t
from .structs cimport TokenC
from .lexeme cimport attr_id_t
from .vocab cimport Vocab
from .tokens.doc cimport Doc
from .tokens.doc cimport get_token_attr
from .attrs cimport ID, attr_id_t, NULL_ATTR, ORTH
from .errors import Errors, TempErrors, Warnings, deprecation_warning
from .attrs import IDS
from .attrs import FLAG61 as U_ENT
from .attrs import FLAG60 as B2_ENT
from .attrs import FLAG59 as B3_ENT
from .attrs import FLAG58 as B4_ENT
from .attrs import FLAG43 as L2_ENT
from .attrs import FLAG42 as L3_ENT
from .attrs import FLAG41 as L4_ENT
from .attrs import FLAG43 as I2_ENT
from .attrs import FLAG42 as I3_ENT
from .attrs import FLAG41 as I4_ENT
DELIMITER = '||'
DELIMITER = '||'
INDEX_HEAD = 1
INDEX_RELOP = 0
cdef enum action_t:
REJECT = 0000
MATCH = 1000
ADVANCE = 0100
RETRY = 0010
RETRY_EXTEND = 0011
MATCH_EXTEND = 1001
MATCH_REJECT = 2000
cdef enum quantifier_t:
ZERO
ZERO_ONE
ZERO_PLUS
ONE
ONE_PLUS
cdef struct AttrValueC:
attr_id_t attr
attr_t value
cdef struct TokenPatternC:
AttrValueC* attrs
int32_t nr_attr
quantifier_t quantifier
hash_t key
cdef struct PatternStateC:
TokenPatternC* pattern
int32_t start
int32_t length
cdef struct MatchC:
attr_t pattern_id
int32_t start
int32_t length
cdef find_matches(TokenPatternC** patterns, int n, Doc doc):
cdef vector[PatternStateC] states
cdef vector[MatchC] matches
cdef PatternStateC state
cdef Pool mem = Pool()
# TODO: Prefill this with the extra attribute values.
extra_attrs = <attr_t**>mem.alloc(len(doc), sizeof(attr_t*))
# Main loop
cdef int i, j
for i in range(doc.length):
for j in range(n):
states.push_back(PatternStateC(patterns[j], i, 0))
transition_states(states, matches, &doc.c[i], extra_attrs[i])
# Handle matches that end in 0-width patterns
finish_states(matches, states)
return [(matches[i].pattern_id, matches[i].start, matches[i].start+matches[i].length)
for i in range(matches.size())]
cdef attr_t get_ent_id(const TokenPatternC* pattern) nogil:
# The code was originally designed to always have pattern[1].attrs.value
# be the ent_id when we get to the end of a pattern. However, Issue #2671
# showed this wasn't the case when we had a reject-and-continue before a
# match. I still don't really understand what's going on here, but this
# workaround does resolve the issue.
while pattern.attrs.attr != ID and pattern.nr_attr > 0:
pattern += 1
return pattern.attrs.value
cdef void transition_states(vector[PatternStateC]& states, vector[MatchC]& matches,
const TokenC* token, const attr_t* extra_attrs) except *:
cdef int q = 0
cdef vector[PatternStateC] new_states
for i in range(states.size()):
action = get_action(states[i], token, extra_attrs)
if action == REJECT:
continue
state = states[i]
states[q] = state
while action in (RETRY, RETRY_EXTEND):
if action == RETRY_EXTEND:
new_states.push_back(
PatternStateC(pattern=state.pattern, start=state.start,
length=state.length+1))
states[q].pattern += 1
action = get_action(states[q], token, extra_attrs)
if action == REJECT:
pass
elif action == ADVANCE:
states[q].pattern += 1
states[q].length += 1
q += 1
else:
ent_id = get_ent_id(&state.pattern[1])
if action == MATCH:
matches.push_back(
MatchC(pattern_id=ent_id, start=state.start,
length=state.length+1))
elif action == MATCH_REJECT:
matches.push_back(
MatchC(pattern_id=ent_id, start=state.start,
length=state.length))
elif action == MATCH_EXTEND:
matches.push_back(
MatchC(pattern_id=ent_id, start=state.start,
length=state.length))
states[q].length += 1
q += 1
states.resize(q)
for i in range(new_states.size()):
states.push_back(new_states[i])
cdef void finish_states(vector[MatchC]& matches, vector[PatternStateC]& states) except *:
'''Handle states that end in zero-width patterns.'''
cdef PatternStateC state
for i in range(states.size()):
state = states[i]
while get_quantifier(state) in (ZERO_PLUS, ZERO_ONE):
is_final = get_is_final(state)
if is_final:
ent_id = get_ent_id(state.pattern)
matches.push_back(
MatchC(pattern_id=ent_id, start=state.start, length=state.length))
break
else:
state.pattern += 1
cdef action_t get_action(PatternStateC state, const TokenC* token, const attr_t* extra_attrs) nogil:
'''We need to consider:
a) Does the token match the specification? [Yes, No]
b) What's the quantifier? [1, 0+, ?]
c) Is this the last specification? [final, non-final]
We can transition in the following ways:
a) Do we emit a match?
b) Do we add a state with (next state, next token)?
c) Do we add a state with (next state, same token)?
d) Do we add a state with (same state, next token)?
We'll code the actions as boolean strings, so 0000 means no to all 4,
1000 means match but no states added, etc.
1:
Yes, final:
1000
Yes, non-final:
0100
No, final:
0000
No, non-final
0000
0+:
Yes, final:
1001
Yes, non-final:
0011
No, final:
1000 (note: Don't include last token!)
No, non-final:
0010
?:
Yes, final:
1000
Yes, non-final:
0100
No, final:
1000 (note: Don't include last token!)
No, non-final:
0010
Possible combinations: 1000, 0100, 0000, 1001, 0011, 0010,
We'll name the bits "match", "advance", "retry", "extend"
REJECT = 0000
MATCH = 1000
ADVANCE = 0100
RETRY = 0010
MATCH_EXTEND = 1001
RETRY_EXTEND = 0011
MATCH_REJECT = 2000 # Match, but don't include last token
Problem: If a quantifier is matching, we're adding a lot of open partials
'''
cdef char is_match
is_match = get_is_match(state, token, extra_attrs)
quantifier = get_quantifier(state)
is_final = get_is_final(state)
if quantifier == ZERO:
is_match = not is_match
quantifier = ONE
if quantifier == ONE:
if is_match and is_final:
# Yes, final: 1000
return MATCH
elif is_match and not is_final:
# Yes, non-final: 0100
return ADVANCE
elif not is_match and is_final:
# No, final: 0000
return REJECT
else:
return REJECT
elif quantifier == ZERO_PLUS:
if is_match and is_final:
# Yes, final: 1001
return MATCH_EXTEND
elif is_match and not is_final:
# Yes, non-final: 0011
return RETRY_EXTEND
elif not is_match and is_final:
# No, final 2000 (note: Don't include last token!)
return MATCH_REJECT
else:
# No, non-final 0010
return RETRY
elif quantifier == ZERO_ONE:
if is_match and is_final:
# Yes, final: 1000
return MATCH
elif is_match and not is_final:
# Yes, non-final: 0100
return ADVANCE
elif not is_match and is_final:
# No, final 2000 (note: Don't include last token!)
return MATCH_REJECT
else:
# No, non-final 0010
return RETRY
cdef char get_is_match(PatternStateC state, const TokenC* token, const attr_t* extra_attrs) nogil:
spec = state.pattern
for attr in spec.attrs[:spec.nr_attr]:
if get_token_attr(token, attr.attr) != attr.value:
return 0
else:
return 1
cdef char get_is_final(PatternStateC state) nogil:
if state.pattern[1].attrs[0].attr == ID and state.pattern[1].nr_attr == 0:
return 1
else:
return 0
cdef char get_quantifier(PatternStateC state) nogil:
return state.pattern.quantifier
DEF PADDING = 5
cdef TokenPatternC* init_pattern(Pool mem, attr_t entity_id,
object token_specs) except NULL:
pattern = <TokenPatternC*>mem.alloc(len(token_specs) + 1, sizeof(TokenPatternC))
cdef int i
for i, (quantifier, spec) in enumerate(token_specs):
pattern[i].quantifier = quantifier
pattern[i].attrs = <AttrValueC*>mem.alloc(len(spec), sizeof(AttrValueC))
pattern[i].nr_attr = len(spec)
for j, (attr, value) in enumerate(spec):
pattern[i].attrs[j].attr = attr
pattern[i].attrs[j].value = value
pattern[i].key = hash64(pattern[i].attrs, pattern[i].nr_attr * sizeof(AttrValueC), 0)
i = len(token_specs)
pattern[i].attrs = <AttrValueC*>mem.alloc(2, sizeof(AttrValueC))
pattern[i].attrs[0].attr = ID
pattern[i].attrs[0].value = entity_id
pattern[i].nr_attr = 0
return pattern
cdef attr_t get_pattern_key(const TokenPatternC* pattern) nogil:
while pattern.nr_attr != 0:
pattern += 1
id_attr = pattern[0].attrs[0]
if id_attr.attr != ID:
with gil:
raise ValueError(Errors.E074.format(attr=ID, bad_attr=id_attr.attr))
return id_attr.value
def _convert_strings(token_specs, string_store):
# Support 'syntactic sugar' operator '+', as combination of ONE, ZERO_PLUS
operators = {'*': (ZERO_PLUS,), '+': (ONE, ZERO_PLUS),
'?': (ZERO_ONE,), '1': (ONE,), '!': (ZERO,)}
tokens = []
op = ONE
for spec in token_specs:
if not spec:
# Signifier for 'any token'
tokens.append((ONE, [(NULL_ATTR, 0)]))
continue
token = []
ops = (ONE,)
for attr, value in spec.items():
if isinstance(attr, basestring) and attr.upper() == 'OP':
if value in operators:
ops = operators[value]
else:
keys = ', '.join(operators.keys())
raise KeyError(Errors.E011.format(op=value, opts=keys))
if isinstance(attr, basestring):
attr = IDS.get(attr.upper())
if isinstance(value, basestring):
value = string_store.add(value)
if isinstance(value, bool):
value = int(value)
if attr is not None:
token.append((attr, value))
for op in ops:
tokens.append((op, token))
return tokens
cdef class Matcher:
"""Match sequences of tokens, based on pattern rules."""
cdef Pool mem
cdef vector[TokenPatternC*] patterns
cdef readonly Vocab vocab
cdef public object _patterns
cdef public object _entities
cdef public object _callbacks
def __init__(self, vocab):
"""Create the Matcher.
vocab (Vocab): The vocabulary object, which must be shared with the
documents the matcher will operate on.
RETURNS (Matcher): The newly constructed object.
"""
self._patterns = {}
self._entities = {}
self._callbacks = {}
self.vocab = vocab
self.mem = Pool()
def __reduce__(self):
data = (self.vocab, self._patterns, self._callbacks)
return (unpickle_matcher, data, None, None)
def __len__(self):
"""Get the number of rules added to the matcher. Note that this only
returns the number of rules (identical with the number of IDs), not the
number of individual patterns.
RETURNS (int): The number of rules.
"""
return len(self._patterns)
def __contains__(self, key):
"""Check whether the matcher contains rules for a match ID.
key (unicode): The match ID.
RETURNS (bool): Whether the matcher contains rules for this match ID.
"""
return self._normalize_key(key) in self._patterns
def add(self, key, on_match, *patterns):
"""Add a match-rule to the matcher. A match-rule consists of: an ID
key, an on_match callback, and one or more patterns.
If the key exists, the patterns are appended to the previous ones, and
the previous on_match callback is replaced. The `on_match` callback
will receive the arguments `(matcher, doc, i, matches)`. You can also
set `on_match` to `None` to not perform any actions.
A pattern consists of one or more `token_specs`, where a `token_spec`
is a dictionary mapping attribute IDs to values, and optionally a
quantifier operator under the key "op". The available quantifiers are:
'!': Negate the pattern, by requiring it to match exactly 0 times.
'?': Make the pattern optional, by allowing it to match 0 or 1 times.
'+': Require the pattern to match 1 or more times.
'*': Allow the pattern to zero or more times.
The + and * operators are usually interpretted "greedily", i.e. longer
matches are returned where possible. However, if you specify two '+'
and '*' patterns in a row and their matches overlap, the first
operator will behave non-greedily. This quirk in the semantics makes
the matcher more efficient, by avoiding the need for back-tracking.
key (unicode): The match ID.
on_match (callable): Callback executed on match.
*patterns (list): List of token descriptions.
"""
for pattern in patterns:
if len(pattern) == 0:
raise ValueError(Errors.E012.format(key=key))
key = self._normalize_key(key)
for pattern in patterns:
specs = _convert_strings(pattern, self.vocab.strings)
self.patterns.push_back(init_pattern(self.mem, key, specs))
self._patterns.setdefault(key, [])
self._callbacks[key] = on_match
self._patterns[key].extend(patterns)
def remove(self, key):
"""Remove a rule from the matcher. A KeyError is raised if the key does
not exist.
key (unicode): The ID of the match rule.
"""
key = self._normalize_key(key)
self._patterns.pop(key)
self._callbacks.pop(key)
cdef int i = 0
while i < self.patterns.size():
pattern_key = get_pattern_key(self.patterns.at(i))
if pattern_key == key:
self.patterns.erase(self.patterns.begin()+i)
else:
i += 1
def has_key(self, key):
"""Check whether the matcher has a rule with a given key.
key (string or int): The key to check.
RETURNS (bool): Whether the matcher has the rule.
"""
key = self._normalize_key(key)
return key in self._patterns
def get(self, key, default=None):
"""Retrieve the pattern stored for a key.
key (unicode or int): The key to retrieve.
RETURNS (tuple): The rule, as an (on_match, patterns) tuple.
"""
key = self._normalize_key(key)
if key not in self._patterns:
return default
return (self._callbacks[key], self._patterns[key])
def pipe(self, docs, batch_size=1000, n_threads=2):
"""Match a stream of documents, yielding them in turn.
docs (iterable): A stream of documents.
batch_size (int): Number of documents to accumulate into a working set.
n_threads (int): The number of threads with which to work on the buffer
in parallel, if the implementation supports multi-threading.
YIELDS (Doc): Documents, in order.
"""
for doc in docs:
self(doc)
yield doc
def __call__(self, Doc doc):
"""Find all token sequences matching the supplied pattern.
doc (Doc): The document to match over.
RETURNS (list): A list of `(key, start, end)` tuples,
describing the matches. A match tuple describes a span
`doc[start:end]`. The `label_id` and `key` are both integers.
"""
matches = find_matches(&self.patterns[0], self.patterns.size(), doc)
for i, (key, start, end) in enumerate(matches):
on_match = self._callbacks.get(key, None)
if on_match is not None:
on_match(self, doc, i, matches)
return matches
def _normalize_key(self, key):
if isinstance(key, basestring):
return self.vocab.strings.add(key)
else:
return key
def unpickle_matcher(vocab, patterns, callbacks):
matcher = Matcher(vocab)
for key, specs in patterns.items():
callback = callbacks.get(key, None)
matcher.add(key, callback, *specs)
return matcher
def _get_longest_matches(matches):
'''Filter out matches that have a longer equivalent.'''
longest_matches = {}
for pattern_id, start, end in matches:
key = (pattern_id, start)
length = end-start
if key not in longest_matches or length > longest_matches[key]:
longest_matches[key] = length
return [(pattern_id, start, start+length)
for (pattern_id, start), length in longest_matches.items()]
def get_bilou(length):
if length == 0:
raise ValueError("Length must be >= 1")
elif length == 1:
return [U_ENT]
elif length == 2:
return [B2_ENT, L2_ENT]
elif length == 3:
return [B3_ENT, I3_ENT, L3_ENT]
else:
return [B4_ENT, I4_ENT] + [I4_ENT] * (length-3) + [L4_ENT]
cdef class PhraseMatcher:
cdef Pool mem
cdef Vocab vocab
cdef Matcher matcher
cdef PreshMap phrase_ids
cdef int max_length
cdef attr_id_t attr
cdef public object _callbacks
cdef public object _patterns
def __init__(self, Vocab vocab, max_length=0, attr='ORTH'):
if max_length != 0:
deprecation_warning(Warnings.W010)
self.mem = Pool()
self.max_length = max_length
self.vocab = vocab
self.matcher = Matcher(self.vocab)
if isinstance(attr, long):
self.attr = attr
else:
self.attr = self.vocab.strings[attr]
self.phrase_ids = PreshMap()
abstract_patterns = [
[{U_ENT: True}],
[{B2_ENT: True}, {L2_ENT: True}],
[{B3_ENT: True}, {I3_ENT: True}, {L3_ENT: True}],
[{B4_ENT: True}, {I4_ENT: True}, {I4_ENT: True, "OP": "+"}, {L4_ENT: True}],
]
self.matcher.add('Candidate', None, *abstract_patterns)
self._callbacks = {}
def __len__(self):
"""Get the number of rules added to the matcher. Note that this only
returns the number of rules (identical with the number of IDs), not the
number of individual patterns.
RETURNS (int): The number of rules.
"""
return len(self.phrase_ids)
def __contains__(self, key):
"""Check whether the matcher contains rules for a match ID.
key (unicode): The match ID.
RETURNS (bool): Whether the matcher contains rules for this match ID.
"""
cdef hash_t ent_id = self.matcher._normalize_key(key)
return ent_id in self._callbacks
def __reduce__(self):
return (self.__class__, (self.vocab,), None, None)
def add(self, key, on_match, *docs):
"""Add a match-rule to the phrase-matcher. A match-rule consists of: an ID
key, an on_match callback, and one or more patterns.
key (unicode): The match ID.
on_match (callable): Callback executed on match.
*docs (Doc): `Doc` objects representing match patterns.
"""
cdef Doc doc
cdef hash_t ent_id = self.matcher._normalize_key(key)
self._callbacks[ent_id] = on_match
cdef int length
cdef int i
cdef hash_t phrase_hash
cdef Pool mem = Pool()
for doc in docs:
length = doc.length
if length == 0:
continue
tags = get_bilou(length)
phrase_key = <attr_t*>mem.alloc(length, sizeof(attr_t))
for i, tag in enumerate(tags):
attr_value = self.get_lex_value(doc, i)
lexeme = self.vocab[attr_value]
lexeme.set_flag(tag, True)
phrase_key[i] = lexeme.orth
phrase_hash = hash64(phrase_key,
length * sizeof(attr_t), 0)
self.phrase_ids.set(phrase_hash, <void*>ent_id)
def __call__(self, Doc doc):
"""Find all sequences matching the supplied patterns on the `Doc`.
doc (Doc): The document to match over.
RETURNS (list): A list of `(key, start, end)` tuples,
describing the matches. A match tuple describes a span
`doc[start:end]`. The `label_id` and `key` are both integers.
"""
matches = []
if self.attr == ORTH:
match_doc = doc
else:
# If we're not matching on the ORTH, match_doc will be a Doc whose
# token.orth values are the attribute values we're matching on,
# e.g. Doc(nlp.vocab, words=[token.pos_ for token in doc])
words = [self.get_lex_value(doc, i) for i in range(len(doc))]
match_doc = Doc(self.vocab, words=words)
for _, start, end in self.matcher(match_doc):
ent_id = self.accept_match(match_doc, start, end)
if ent_id is not None:
matches.append((ent_id, start, end))
for i, (ent_id, start, end) in enumerate(matches):
on_match = self._callbacks.get(ent_id)
if on_match is not None:
on_match(self, doc, i, matches)
return matches
def pipe(self, stream, batch_size=1000, n_threads=1, return_matches=False,
as_tuples=False):
"""Match a stream of documents, yielding them in turn.
docs (iterable): A stream of documents.
batch_size (int): Number of documents to accumulate into a working set.
n_threads (int): The number of threads with which to work on the buffer
in parallel, if the implementation supports multi-threading.
return_matches (bool): Yield the match lists along with the docs, making
results (doc, matches) tuples.
as_tuples (bool): Interpret the input stream as (doc, context) tuples,
and yield (result, context) tuples out.
If both return_matches and as_tuples are True, the output will
be a sequence of ((doc, matches), context) tuples.
YIELDS (Doc): Documents, in order.
"""
if as_tuples:
for doc, context in stream:
matches = self(doc)
if return_matches:
yield ((doc, matches), context)
else:
yield (doc, context)
else:
for doc in stream:
matches = self(doc)
if return_matches:
yield (doc, matches)
else:
yield doc
def accept_match(self, Doc doc, int start, int end):
cdef int i, j
cdef Pool mem = Pool()
phrase_key = <attr_t*>mem.alloc(end-start, sizeof(attr_t))
for i, j in enumerate(range(start, end)):
phrase_key[i] = doc.c[j].lex.orth
cdef hash_t key = hash64(phrase_key,
(end-start) * sizeof(attr_t), 0)
ent_id = <hash_t>self.phrase_ids.get(key)
if ent_id == 0:
return None
else:
return ent_id
def get_lex_value(self, Doc doc, int i):
if self.attr == ORTH:
# Return the regular orth value of the lexeme
return doc.c[i].lex.orth
# Get the attribute value instead, e.g. token.pos
attr_value = get_token_attr(&doc.c[i], self.attr)
if attr_value in (0, 1):
# Value is boolean, convert to string
string_attr_value = str(attr_value)
else:
string_attr_value = self.vocab.strings[attr_value]
string_attr_name = self.vocab.strings[self.attr]
# Concatenate the attr name and value to not pollute lexeme space
# e.g. 'POS-VERB' instead of just 'VERB', which could otherwise
# create false positive matches
return 'matcher:{}-{}'.format(string_attr_name, string_attr_value)
cdef class DependencyTreeMatcher:
"""Match dependency parse tree based on pattern rules."""
cdef Pool mem
cdef readonly Vocab vocab
cdef readonly Matcher token_matcher
cdef public object _patterns
cdef public object _keys_to_token
cdef public object _root
cdef public object _entities
cdef public object _callbacks
cdef public object _nodes
cdef public object _tree
def __init__(self, vocab):
"""Create the DependencyTreeMatcher.
vocab (Vocab): The vocabulary object, which must be shared with the
documents the matcher will operate on.
RETURNS (DependencyTreeMatcher): The newly constructed object.
"""
size = 20
self.token_matcher = Matcher(vocab)
self._keys_to_token = {}
self._patterns = {}
self._root = {}
self._nodes = {}
self._tree = {}
self._entities = {}
self._callbacks = {}
self.vocab = vocab
self.mem = Pool()
def __reduce__(self):
data = (self.vocab, self._patterns,self._tree, self._callbacks)
return (unpickle_matcher, data, None, None)
def __len__(self):
"""Get the number of rules, which are edges ,added to the dependency tree matcher.
RETURNS (int): The number of rules.
"""
return len(self._patterns)
def __contains__(self, key):
"""Check whether the matcher contains rules for a match ID.
key (unicode): The match ID.
RETURNS (bool): Whether the matcher contains rules for this match ID.
"""
return self._normalize_key(key) in self._patterns
def validateInput(self, pattern, key):
idx = 0
visitedNodes = {}
for relation in pattern:
if 'PATTERN' not in relation or 'SPEC' not in relation:
raise ValueError(Errors.E098.format(key=key))
if idx == 0:
if not('NODE_NAME' in relation['SPEC'] and 'NBOR_RELOP' not in relation['SPEC'] and 'NBOR_NAME' not in relation['SPEC']):
raise ValueError(Errors.E099.format(key=key))
visitedNodes[relation['SPEC']['NODE_NAME']] = True
else:
if not('NODE_NAME' in relation['SPEC'] and 'NBOR_RELOP' in relation['SPEC'] and 'NBOR_NAME' in relation['SPEC']):
raise ValueError(Errors.E100.format(key=key))
if relation['SPEC']['NODE_NAME'] in visitedNodes or relation['SPEC']['NBOR_NAME'] not in visitedNodes:
raise ValueError(Errors.E101.format(key=key))
visitedNodes[relation['SPEC']['NODE_NAME']] = True
visitedNodes[relation['SPEC']['NBOR_NAME']] = True
idx = idx + 1
def add(self, key, on_match, *patterns):
for pattern in patterns:
if len(pattern) == 0:
raise ValueError(Errors.E012.format(key=key))
self.validateInput(pattern,key)
key = self._normalize_key(key)
_patterns = []
for pattern in patterns:
token_patterns = []
for i in range(len(pattern)):
token_pattern = [pattern[i]['PATTERN']]
token_patterns.append(token_pattern)
# self.patterns.append(token_patterns)
_patterns.append(token_patterns)
self._patterns.setdefault(key, [])
self._callbacks[key] = on_match
self._patterns[key].extend(_patterns)
# Add each node pattern of all the input patterns individually to the matcher.
# This enables only a single instance of Matcher to be used.
# Multiple adds are required to track each node pattern.
_keys_to_token_list = []
for i in range(len(_patterns)):
_keys_to_token = {}
# TODO : Better ways to hash edges in pattern?
for j in range(len(_patterns[i])):
k = self._normalize_key(unicode(key)+DELIMITER+unicode(i)+DELIMITER+unicode(j))
self.token_matcher.add(k,None,_patterns[i][j])
_keys_to_token[k] = j
_keys_to_token_list.append(_keys_to_token)
self._keys_to_token.setdefault(key, [])
self._keys_to_token[key].extend(_keys_to_token_list)
_nodes_list = []
for pattern in patterns:
nodes = {}
for i in range(len(pattern)):
nodes[pattern[i]['SPEC']['NODE_NAME']]=i
_nodes_list.append(nodes)
self._nodes.setdefault(key, [])
self._nodes[key].extend(_nodes_list)
# Create an object tree to traverse later on.
# This datastructure enable easy tree pattern match.
# Doc-Token based tree cannot be reused since it is memory heavy and
# tightly coupled with doc
self.retrieve_tree(patterns,_nodes_list,key)
def retrieve_tree(self,patterns,_nodes_list,key):
_heads_list = []
_root_list = []
for i in range(len(patterns)):
heads = {}
root = -1
for j in range(len(patterns[i])):
token_pattern = patterns[i][j]
if('NBOR_RELOP' not in token_pattern['SPEC']):
heads[j] = ('root',j)
root = j
else:
heads[j] = (token_pattern['SPEC']['NBOR_RELOP'],_nodes_list[i][token_pattern['SPEC']['NBOR_NAME']])
_heads_list.append(heads)
_root_list.append(root)
_tree_list = []
for i in range(len(patterns)):
tree = {}
for j in range(len(patterns[i])):
if(_heads_list[i][j][INDEX_HEAD] == j):
continue
head = _heads_list[i][j][INDEX_HEAD]
if(head not in tree):
tree[head] = []
tree[head].append( (_heads_list[i][j][INDEX_RELOP],j) )
_tree_list.append(tree)
self._tree.setdefault(key, [])
self._tree[key].extend(_tree_list)
self._root.setdefault(key, [])
self._root[key].extend(_root_list)
def has_key(self, key):
"""Check whether the matcher has a rule with a given key.
key (string or int): The key to check.
RETURNS (bool): Whether the matcher has the rule.
"""
key = self._normalize_key(key)
return key in self._patterns
def get(self, key, default=None):
"""Retrieve the pattern stored for a key.
key (unicode or int): The key to retrieve.
RETURNS (tuple): The rule, as an (on_match, patterns) tuple.
"""
key = self._normalize_key(key)
if key not in self._patterns:
return default
return (self._callbacks[key], self._patterns[key])
def __call__(self, Doc doc):
matched_trees = []
matches = self.token_matcher(doc)
for key in list(self._patterns.keys()):
_patterns_list = self._patterns[key]
_keys_to_token_list = self._keys_to_token[key]
_root_list = self._root[key]
_tree_list = self._tree[key]
_nodes_list = self._nodes[key]
length = len(_patterns_list)
for i in range(length):
_keys_to_token = _keys_to_token_list[i]
_root = _root_list[i]
_tree = _tree_list[i]
_nodes = _nodes_list[i]
id_to_position = {}
for i in range(len(_nodes)):
id_to_position[i]=[]
# This could be taken outside to improve running time..?
for match_id, start, end in matches:
if match_id in _keys_to_token:
id_to_position[_keys_to_token[match_id]].append(start)
_node_operator_map = self.get_node_operator_map(doc,_tree,id_to_position,_nodes,_root)
length = len(_nodes)
if _root in id_to_position:
candidates = id_to_position[_root]
for candidate in candidates:
isVisited = {}
self.dfs(candidate,_root,_tree,id_to_position,doc,isVisited,_node_operator_map)
# To check if the subtree pattern is completely identified. This is a heuristic.
# This is done to reduce the complexity of exponential unordered subtree matching.
# Will give approximate matches in some cases.
if(len(isVisited) == length):
matched_trees.append((key,list(isVisited)))
for i, (ent_id, nodes) in enumerate(matched_trees):
on_match = self._callbacks.get(ent_id)
if on_match is not None:
on_match(self, doc, i, matches)
return matched_trees
def dfs(self,candidate,root,tree,id_to_position,doc,isVisited,_node_operator_map):
if(root in id_to_position and candidate in id_to_position[root]):
# color the node since it is valid
isVisited[candidate] = True
if root in tree:
for root_child in tree[root]:
if candidate in _node_operator_map and root_child[INDEX_RELOP] in _node_operator_map[candidate]:
candidate_children = _node_operator_map[candidate][root_child[INDEX_RELOP]]
for candidate_child in candidate_children:
result = self.dfs(
candidate_child.i,
root_child[INDEX_HEAD],
tree,
id_to_position,
doc,
isVisited,
_node_operator_map
)
# Given a node and an edge operator, to return the list of nodes
# from the doc that belong to node+operator. This is used to store
# all the results beforehand to prevent unnecessary computation while
# pattern matching
# _node_operator_map[node][operator] = [...]
def get_node_operator_map(self,doc,tree,id_to_position,nodes,root):
_node_operator_map = {}
all_node_indices = nodes.values()
all_operators = []
for node in all_node_indices:
if node in tree:
for child in tree[node]:
all_operators.append(child[INDEX_RELOP])
all_operators = list(set(all_operators))
all_nodes = []
for node in all_node_indices:
all_nodes = all_nodes + id_to_position[node]
all_nodes = list(set(all_nodes))
for node in all_nodes:
_node_operator_map[node] = {}
for operator in all_operators:
_node_operator_map[node][operator] = []
# Used to invoke methods for each operator
switcher = {
'<':self.dep,
'>':self.gov,
'>>':self.dep_chain,
'<<':self.gov_chain,
'.':self.imm_precede,
'$+':self.imm_right_sib,
'$-':self.imm_left_sib,
'$++':self.right_sib,
'$--':self.left_sib
}
for operator in all_operators:
for node in all_nodes:
_node_operator_map[node][operator] = switcher.get(operator)(doc,node)
return _node_operator_map
def dep(self,doc,node):
return list(doc[node].head)
def gov(self,doc,node):
return list(doc[node].children)
def dep_chain(self,doc,node):
return list(doc[node].ancestors)
def gov_chain(self,doc,node):
return list(doc[node].subtree)
def imm_precede(self,doc,node):
if node>0:
return [doc[node-1]]
return []
def imm_right_sib(self,doc,node):
for idx in range(list(doc[node].head.children)):
if idx == node-1:
return [doc[idx]]
return []
def imm_left_sib(self,doc,node):
for idx in range(list(doc[node].head.children)):
if idx == node+1:
return [doc[idx]]
return []
def right_sib(self,doc,node):
candidate_children = []
for idx in range(list(doc[node].head.children)):
if idx < node:
candidate_children.append(doc[idx])
return candidate_children
def left_sib(self,doc,node):
candidate_children = []
for idx in range(list(doc[node].head.children)):
if idx > node:
candidate_children.append(doc[idx])
return candidate_children
def _normalize_key(self, key):
if isinstance(key, basestring):
return self.vocab.strings.add(key)
else:
return key