mirror of
https://github.com/explosion/spaCy.git
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135 lines
4.8 KiB
Python
135 lines
4.8 KiB
Python
# coding: utf8
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from __future__ import unicode_literals
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import numpy
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import gzip
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import srsly
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from thinc.neural.ops import NumpyOps
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from ..compat import copy_reg
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from ..tokens import Doc
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from ..attrs import SPACY, ORTH
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class DocBox(object):
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"""Serialize analyses from a collection of doc objects."""
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def __init__(self, attrs=None, store_user_data=False):
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"""Create a DocBox object, to hold serialized annotations.
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attrs (list): List of attributes to serialize. 'orth' and 'spacy' are
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always serialized, so they're not required. Defaults to None.
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"""
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attrs = attrs or []
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# Ensure ORTH is always attrs[0]
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self.attrs = [attr for attr in attrs if attr != ORTH and attr != SPACY]
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self.attrs.insert(0, ORTH)
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self.tokens = []
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self.spaces = []
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self.user_data = []
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self.strings = set()
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self.store_user_data = store_user_data
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def add(self, doc):
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"""Add a doc's annotations to the DocBox for serialization."""
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array = doc.to_array(self.attrs)
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if len(array.shape) == 1:
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array = array.reshape((array.shape[0], 1))
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self.tokens.append(array)
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spaces = doc.to_array(SPACY)
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assert array.shape[0] == spaces.shape[0]
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spaces = spaces.reshape((spaces.shape[0], 1))
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self.spaces.append(numpy.asarray(spaces, dtype=bool))
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self.strings.update(w.text for w in doc)
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if self.store_user_data:
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self.user_data.append(srsly.msgpack_dumps(doc.user_data))
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def get_docs(self, vocab):
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"""Recover Doc objects from the annotations, using the given vocab."""
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for string in self.strings:
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vocab[string]
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orth_col = self.attrs.index(ORTH)
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for i in range(len(self.tokens)):
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tokens = self.tokens[i]
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spaces = self.spaces[i]
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words = [vocab.strings[orth] for orth in tokens[:, orth_col]]
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doc = Doc(vocab, words=words, spaces=spaces)
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doc = doc.from_array(self.attrs, tokens)
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if self.store_user_data:
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doc.user_data.update(srsly.msgpack_loads(self.user_data[i]))
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yield doc
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def merge(self, other):
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"""Extend the annotations of this DocBox with the annotations from another."""
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assert self.attrs == other.attrs
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self.tokens.extend(other.tokens)
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self.spaces.extend(other.spaces)
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self.strings.update(other.strings)
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if self.store_user_data:
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self.user_data.extend(other.user_data)
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def to_bytes(self):
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"""Serialize the DocBox's annotations into a byte string."""
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for tokens in self.tokens:
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assert len(tokens.shape) == 2, tokens.shape
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lengths = [len(tokens) for tokens in self.tokens]
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msg = {
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"attrs": self.attrs,
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"tokens": numpy.vstack(self.tokens).tobytes("C"),
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"spaces": numpy.vstack(self.spaces).tobytes("C"),
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"lengths": numpy.asarray(lengths, dtype="int32").tobytes("C"),
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"strings": list(self.strings),
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}
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if self.store_user_data:
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msg["user_data"] = self.user_data
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return gzip.compress(srsly.msgpack_dumps(msg))
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def from_bytes(self, string):
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"""Deserialize the DocBox's annotations from a byte string."""
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msg = srsly.msgpack_loads(gzip.decompress(string))
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self.attrs = msg["attrs"]
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self.strings = set(msg["strings"])
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lengths = numpy.fromstring(msg["lengths"], dtype="int32")
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flat_spaces = numpy.fromstring(msg["spaces"], dtype=bool)
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flat_tokens = numpy.fromstring(msg["tokens"], dtype="uint64")
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shape = (flat_tokens.size // len(self.attrs), len(self.attrs))
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flat_tokens = flat_tokens.reshape(shape)
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flat_spaces = flat_spaces.reshape((flat_spaces.size, 1))
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self.tokens = NumpyOps().unflatten(flat_tokens, lengths)
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self.spaces = NumpyOps().unflatten(flat_spaces, lengths)
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if self.store_user_data and "user_data" in msg:
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self.user_data = list(msg["user_data"])
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for tokens in self.tokens:
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assert len(tokens.shape) == 2, tokens.shape
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return self
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def merge_boxes(boxes):
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merged = None
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for byte_string in boxes:
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if byte_string is not None:
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box = DocBox(store_user_data=True).from_bytes(byte_string)
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if merged is None:
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merged = box
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else:
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merged.merge(box)
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if merged is not None:
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return merged.to_bytes()
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else:
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return b""
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def pickle_box(box):
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return (unpickle_box, (box.to_bytes(),))
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def unpickle_box(byte_string):
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return DocBox().from_bytes(byte_string)
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copy_reg.pickle(DocBox, pickle_box, unpickle_box)
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# Compatibility, as we had named it this previously.
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Binder = DocBox
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__all__ = ["DocBox"]
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