spaCy/spacy/cli/train_from_config.py
2020-02-18 15:38:18 +01:00

440 lines
14 KiB
Python

from typing import Optional, Dict, List, Union, Sequence
import plac
from wasabi import msg
from pathlib import Path
import thinc
import thinc.schedules
from thinc.api import Model
from pydantic import BaseModel, FilePath, StrictInt
import tqdm
# TODO: relative imports?
import spacy
from spacy.gold import GoldCorpus
from spacy.pipeline.tok2vec import Tok2VecListener
from spacy.ml import component_models
from spacy import util
registry = util.registry
CONFIG_STR = """
[training]
patience = 10
eval_frequency = 10
dropout = 0.2
init_tok2vec = null
vectors = null
max_epochs = 100
orth_variant_level = 0.0
gold_preproc = false
max_length = 0
use_gpu = 0
scores = ["ents_p", "ents_r", "ents_f"]
score_weights = {"ents_f": 1.0}
limit = 0
[training.batch_size]
@schedules = "compounding.v1"
start = 100
stop = 1000
compound = 1.001
[optimizer]
@optimizers = "Adam.v1"
learn_rate = 0.001
beta1 = 0.9
beta2 = 0.999
[nlp]
lang = "en"
vectors = ${training:vectors}
[nlp.pipeline.tok2vec]
factory = "tok2vec"
[nlp.pipeline.ner]
factory = "ner"
[nlp.pipeline.ner.model]
@architectures = "transition_based_ner.v1"
nr_feature_tokens = 3
hidden_width = 64
maxout_pieces = 3
[nlp.pipeline.ner.model.tok2vec]
@architectures = "tok2vec_tensors.v1"
width = ${nlp.pipeline.tok2vec.model:width}
[nlp.pipeline.tok2vec.model]
@architectures = "hash_embed_cnn.v1"
pretrained_vectors = ${nlp:vectors}
width = 128
depth = 4
window_size = 1
embed_size = 10000
maxout_pieces = 3
"""
class PipelineComponent(BaseModel):
factory: str
model: Model
class Config:
arbitrary_types_allowed = True
class ConfigSchema(BaseModel):
optimizer: Optional["Optimizer"]
class training(BaseModel):
patience: int = 10
eval_frequency: int = 100
dropout: float = 0.2
init_tok2vec: Optional[FilePath] = None
vectors: Optional[str] = None
max_epochs: int = 100
orth_variant_level: float = 0.0
gold_preproc: bool = False
max_length: int = 0
use_gpu: int = 0
scores: List[str] = ["ents_p", "ents_r", "ents_f"]
score_weights: Dict[str, Union[int, float]] = {"ents_f": 1.0}
limit: int = 0
batch_size: Union[Sequence[int], int]
class nlp(BaseModel):
lang: str
vectors: Optional[str]
pipeline: Optional[Dict[str, PipelineComponent]]
class Config:
extra = "allow"
# Of course, these would normally decorate the functions where they're defined.
# But for now...
@registry.architectures.register("hash_embed_cnn.v1")
def hash_embed_cnn(
pretrained_vectors, width, depth, embed_size, maxout_pieces, window_size
):
return component_models.Tok2Vec(
width=width,
embed_size=embed_size,
pretrained_vectors=pretrained_vectors,
conv_depth=depth,
cnn_maxout_pieces=maxout_pieces,
bilstm_depth=0,
window_size=window_size,
)
@registry.architectures.register("hash_embed_bilstm.v1")
def hash_embed_bilstm_v1(pretrained_vectors, width, depth, embed_size):
return component_models.Tok2Vec(
width=width,
embed_size=embed_size,
pretrained_vectors=pretrained_vectors,
bilstm_depth=depth,
conv_depth=0,
cnn_maxout_pieces=0,
)
@registry.architectures.register("tagger_model.v1")
def build_tagger_model_v1(tok2vec):
return component_models.build_tagger_model(nr_class=None, tok2vec=tok2vec)
@registry.architectures.register("transition_based_parser.v1")
def create_tb_parser_model(
tok2vec: Model,
nr_feature_tokens: StrictInt = 3,
hidden_width: StrictInt = 64,
maxout_pieces: StrictInt = 3,
):
from thinc.api import Linear, chain, list2array, use_ops, zero_init
from spacy.ml._layers import PrecomputableAffine
from spacy.syntax._parser_model import ParserModel
token_vector_width = tok2vec.get_dim("nO")
tok2vec = chain(tok2vec, list2array())
tok2vec.set_dim("nO", token_vector_width)
lower = PrecomputableAffine(
hidden_width, nF=nr_feature_tokens, nI=tok2vec.get_dim("nO"), nP=maxout_pieces
)
lower.set_dim("nP", maxout_pieces)
with use_ops("numpy"):
# Initialize weights at zero, as it's a classification layer.
upper = Linear(init_W=zero_init)
return ParserModel(tok2vec, lower, upper)
@plac.annotations(
# fmt: off
train_path=("Location of JSON-formatted training data", "positional", None, Path),
dev_path=("Location of JSON-formatted development data", "positional", None, Path),
config_path=("Path to config file", "positional", None, Path),
output_path=("Output directory to store model in", "option", "o", Path),
meta_path=("Optional path to meta.json to use as base.", "option", "m", Path),
raw_text=("Path to jsonl file with unlabelled text documents.", "option", "rt", Path),
# fmt: on
)
def train_from_config_cli(
train_path,
dev_path,
config_path,
output_path=None,
meta_path=None,
raw_text=None,
debug=False,
verbose=False,
):
"""
Train or update a spaCy model. Requires data to be formatted in spaCy's
JSON format. To convert data from other formats, use the `spacy convert`
command.
"""
if not config_path or not config_path.exists():
msg.fail("Config file not found", config_path, exits=1)
if not train_path or not train_path.exists():
msg.fail("Training data not found", train_path, exits=1)
if not dev_path or not dev_path.exists():
msg.fail("Development data not found", dev_path, exits=1)
if meta_path is not None and not meta_path.exists():
msg.fail("Can't find model meta.json", meta_path, exits=1)
if output_path is not None and not output_path.exists():
output_path.mkdir()
try:
train_from_config(
config_path,
{"train": train_path, "dev": dev_path},
output_path=output_path,
meta_path=meta_path,
raw_text=raw_text,
)
except KeyboardInterrupt:
msg.warn("Cancelled.")
def train_from_config(
config_path, data_paths, raw_text=None, meta_path=None, output_path=None,
):
msg.info(f"Loading config from: {config_path}")
config = util.load_from_config(config_path, create_objects=True)
use_gpu = config["training"]["use_gpu"]
if use_gpu >= 0:
msg.info("Using GPU")
else:
msg.info("Using CPU")
msg.info("Creating nlp from config")
nlp = create_nlp_from_config(**config["nlp"])
optimizer = config["optimizer"]
limit = config["training"]["limit"]
msg.info("Loading training corpus")
corpus = GoldCorpus(data_paths["train"], data_paths["dev"], limit=limit)
msg.info("Initializing the nlp pipeline")
nlp.begin_training(lambda: corpus.train_examples, device=use_gpu)
train_batches = create_train_batches(nlp, corpus, config["training"])
evaluate = create_evaluation_callback(nlp, optimizer, corpus, config["training"])
# Create iterator, which yields out info after each optimization step.
msg.info("Start training")
training_step_iterator = train_while_improving(
nlp,
optimizer,
train_batches,
evaluate,
config["training"]["dropout"],
config["training"]["patience"],
config["training"]["eval_frequency"],
)
msg.info(f"Training. Initial learn rate: {optimizer.learn_rate}")
print_row = setup_printer(config)
try:
progress = tqdm.tqdm(total=config["training"]["eval_frequency"], leave=False)
for batch, info, is_best_checkpoint in training_step_iterator:
progress.update(1)
if is_best_checkpoint is not None:
progress.close()
print_row(info)
if is_best_checkpoint and output_path is not None:
nlp.to_disk(output_path)
progress = tqdm.tqdm(
total=config["training"]["eval_frequency"], leave=False
)
finally:
if output_path is not None:
with nlp.use_params(optimizer.averages):
final_model_path = output_path / "model-final"
nlp.to_disk(final_model_path)
msg.good("Saved model to output directory", final_model_path)
# with msg.loading("Creating best model..."):
# best_model_path = _collate_best_model(meta, output_path, nlp.pipe_names)
# msg.good("Created best model", best_model_path)
def create_nlp_from_config(lang, vectors, pipeline):
lang_class = spacy.util.get_lang_class(lang)
nlp = lang_class()
if vectors is not None:
spacy.cli.train._load_vectors(nlp, vectors)
for name, component_cfg in pipeline.items():
factory = component_cfg.pop("factory")
component = nlp.create_pipe(factory, config=component_cfg)
nlp.add_pipe(component, name=name)
return nlp
def create_train_batches(nlp, corpus, cfg):
while True:
train_examples = corpus.train_dataset(
nlp,
noise_level=0.0,
orth_variant_level=cfg["orth_variant_level"],
gold_preproc=cfg["gold_preproc"],
max_length=cfg["max_length"],
ignore_misaligned=True,
)
for batch in util.minibatch_by_words(train_examples, size=cfg["batch_size"]):
yield batch
def create_evaluation_callback(nlp, optimizer, corpus, cfg):
def evaluate():
with nlp.use_params(optimizer.averages):
dev_examples = list(
corpus.dev_dataset(
nlp, gold_preproc=cfg["gold_preproc"], ignore_misaligned=True
)
)
scorer = nlp.evaluate(dev_examples)
scores = scorer.scores
# Calculate a weighted sum based on score_weights for the main score
weights = cfg["score_weights"]
weighted_score = sum(scores[s] * weights.get(s, 0.0) for s in weights)
return weighted_score, scorer.scores
return evaluate
def train_while_improving(
nlp, optimizer, train_data, evaluate, dropout, patience, eval_frequency
):
"""Train until an evaluation stops improving. Works as a generator,
with each iteration yielding a tuple `(batch, info, is_best_checkpoint)`,
where info is a dict, and is_best_checkpoint is in [True, False, None] --
None indicating that the iteration was not evaluated as a checkpoint.
The evaluation is conducted by calling the evaluate callback, which should
Positional arguments:
nlp: The spaCy pipeline to evaluate.
train_data (Iterable[Batch]): A generator of batches, with the training
data. Each batch should be a Sized[Tuple[Input, Annot]]. The training
data iterable needs to take care of iterating over the epochs and
shuffling.
evaluate (Callable[[], Tuple[float, Any]]): A callback to perform evaluation.
The callback should take no arguments and return a tuple
`(main_score, other_scores)`. The main_score should be a float where
higher is better. other_scores can be any object.
Every iteration, the function yields out a tuple with:
* batch: A zipped sequence of Tuple[Doc, GoldParse] pairs.
* info: A dict with various information about the last update (see below).
* is_best_checkpoint: A value in None, False, True, indicating whether this
was the best evaluation so far. You should use this to save the model
checkpoints during training. If None, evaluation was not conducted on
that iteration. False means evaluation was conducted, but a previous
evaluation was better.
The info dict provides the following information:
epoch (int): How many passes over the data have been completed.
step (int): How many steps have been completed.
score (float): The main score form the last evaluation.
other_scores: : The other scores from the last evaluation.
loss: The accumulated losses throughout training.
checkpoints: A list of previous results, where each result is a
(score, step, epoch) tuple.
"""
if isinstance(dropout, float):
dropouts = thinc.schedules.constant(dropout)
else:
dropouts = dropout
results = []
losses = {}
for step, batch in enumerate(train_data):
dropout = next(dropouts)
for subbatch in subdivide_batch(batch):
nlp.update(subbatch, drop=dropout, losses=losses, sgd=False)
for name, proc in nlp.pipeline:
if hasattr(proc, "model"):
proc.model.finish_update(optimizer)
optimizer.step_schedules()
if not (step % eval_frequency):
score, other_scores = evaluate()
results.append((score, step))
is_best_checkpoint = score == max(results)[0]
else:
score, other_scores = (None, None)
is_best_checkpoint = None
info = {
"step": step,
"score": score,
"other_scores": other_scores,
"losses": losses,
"checkpoints": results,
}
yield batch, info, is_best_checkpoint
if is_best_checkpoint is not None:
losses = {}
# Stop if no improvement in `patience` updates
best_score, best_step = max(results)
if (step - best_step) >= patience:
break
def subdivide_batch(batch):
return [batch]
def setup_printer(config):
score_cols = config["training"]["scores"]
score_widths = [max(len(col), 6) for col in score_cols]
loss_cols = [f"Loss {pipe}" for pipe in config["nlp"]["pipeline"]]
loss_widths = [max(len(col), 8) for col in loss_cols]
table_header = ["#"] + loss_cols + score_cols + ["Score"]
table_header = [col.upper() for col in table_header]
table_widths = [6] + loss_widths + score_widths + [6]
table_aligns = ["r" for _ in table_widths]
msg.row(table_header, widths=table_widths)
msg.row(["-" * width for width in table_widths])
def print_row(info):
losses = [
"{0:.2f}".format(info["losses"].get(col, 0.0))
for col in config["nlp"]["pipeline"]
]
scores = [
"{0:.2f}".format(info["other_scores"].get(col, 0.0))
for col in config["training"]["scores"]
]
data = [info["step"]] + losses + scores + ["{0:.2f}".format(info["score"])]
msg.row(data, widths=table_widths, aligns=table_aligns)
return print_row
@registry.architectures.register("tok2vec_tensors.v1")
def tok2vec_tensors_v1(width):
tok2vec = Tok2VecListener("tok2vec", width=width)
return tok2vec