mirror of
https://github.com/explosion/spaCy.git
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144 lines
4.7 KiB
Python
144 lines
4.7 KiB
Python
import tqdm
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import srsly
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from itertools import chain
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from pathlib import Path
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from typing import Optional, List, Iterable, cast, Union
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from wasabi import msg
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from ._util import app, Arg, Opt, setup_gpu, import_code, walk_directory
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from ..tokens import Doc, DocBin
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from ..vocab import Vocab
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from ..util import ensure_path, load_model
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path_help = """Location of the documents to predict on.
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Can be a single file in .spacy format or a .jsonl file.
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Files with other extensions are treated as single plain text documents.
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If a directory is provided it is traversed recursively to grab
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all files to be processed.
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The files can be a mixture of .spacy, .jsonl and text files.
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If .jsonl is provided the specified field is going
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to be grabbed ("text" by default)."""
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out_help = "Path to save the resulting .spacy file"
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code_help = (
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"Path to Python file with additional " "code (registered functions) to be imported"
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)
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gold_help = "Use gold preprocessing provided in the .spacy files"
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force_msg = (
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"The provided output file already exists. "
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"To force overwriting the output file, set the --force or -F flag."
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)
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DocOrStrStream = Union[Iterable[str], Iterable[Doc]]
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def _stream_docbin(path: Path, vocab: Vocab) -> Iterable[Doc]:
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"""
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Stream Doc objects from DocBin.
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"""
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docbin = DocBin().from_disk(path)
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for doc in docbin.get_docs(vocab):
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yield doc
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def _stream_jsonl(path: Path, field: str) -> Iterable[str]:
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"""
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Stream "text" field from JSONL. If the field "text" is
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not found it raises error.
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"""
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for entry in srsly.read_jsonl(path):
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if field not in entry:
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msg.fail(f"{path} does not contain the required '{field}' field.", exits=1)
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else:
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yield entry[field]
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def _stream_texts(paths: Iterable[Path]) -> Iterable[str]:
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"""
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Yields strings from text files in paths.
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"""
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for path in paths:
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with open(path, "r") as fin:
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text = fin.read()
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yield text
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@app.command("apply")
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def apply_cli(
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# fmt: off
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model: str = Arg(..., help="Model name or path"),
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data_path: Path = Arg(..., help=path_help, exists=True),
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output_file: Path = Arg(..., help=out_help, dir_okay=False),
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code_path: Optional[Path] = Opt(None, "--code", "-c", help=code_help),
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text_key: str = Opt("text", "--text-key", "-tk", help="Key containing text string for JSONL"),
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force_overwrite: bool = Opt(False, "--force", "-F", help="Force overwriting the output file"),
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use_gpu: int = Opt(-1, "--gpu-id", "-g", help="GPU ID or -1 for CPU."),
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batch_size: int = Opt(1, "--batch-size", "-b", help="Batch size."),
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n_process: int = Opt(1, "--n-process", "-n", help="number of processors to use.")
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):
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"""
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Apply a trained pipeline to documents to get predictions.
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Expects a loadable spaCy pipeline and path to the data, which
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can be a directory or a file.
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The data files can be provided in multiple formats:
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1. .spacy files
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2. .jsonl files with a specified "field" to read the text from.
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3. Files with any other extension are assumed to be containing
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a single document.
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DOCS: https://spacy.io/api/cli#apply
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"""
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data_path = ensure_path(data_path)
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output_file = ensure_path(output_file)
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code_path = ensure_path(code_path)
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if output_file.exists() and not force_overwrite:
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msg.fail(force_msg, exits=1)
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if not data_path.exists():
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msg.fail(f"Couldn't find data path: {data_path}", exits=1)
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import_code(code_path)
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setup_gpu(use_gpu)
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apply(data_path, output_file, model, text_key, batch_size, n_process)
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def apply(
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data_path: Path,
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output_file: Path,
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model: str,
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json_field: str,
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batch_size: int,
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n_process: int,
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):
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docbin = DocBin(store_user_data=True)
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paths = walk_directory(data_path)
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if len(paths) == 0:
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docbin.to_disk(output_file)
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msg.warn(
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"Did not find data to process,"
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f" {data_path} seems to be an empty directory."
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)
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return
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nlp = load_model(model)
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msg.good(f"Loaded model {model}")
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vocab = nlp.vocab
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streams: List[DocOrStrStream] = []
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text_files = []
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for path in paths:
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if path.suffix == ".spacy":
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streams.append(_stream_docbin(path, vocab))
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elif path.suffix == ".jsonl":
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streams.append(_stream_jsonl(path, json_field))
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else:
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text_files.append(path)
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if len(text_files) > 0:
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streams.append(_stream_texts(text_files))
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datagen = cast(DocOrStrStream, chain(*streams))
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for doc in tqdm.tqdm(nlp.pipe(datagen, batch_size=batch_size, n_process=n_process)):
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docbin.add(doc)
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if output_file.suffix == "":
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output_file = output_file.with_suffix(".spacy")
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docbin.to_disk(output_file)
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