spaCy/spacy/training/pretrain.py

from typing import Optional, Callable, Iterable, Union, List
from thinc.api import Config, fix_random_seed, set_gpu_allocator, Model, Optimizer
from thinc.api import set_dropout_rate
from pathlib import Path
from collections import Counter
import srsly
import time
import re

from thinc.config import ConfigValidationError
from wasabi import Printer

from .example import Example
from ..errors import Errors
from ..tokens import Doc
from ..schemas import ConfigSchemaPretrain
from ..util import registry, load_model_from_config, dot_to_object


def pretrain(
    config: Config,
    output_dir: Path,
    resume_path: Optional[Path] = None,
    epoch_resume: Optional[int] = None,
    use_gpu: int = -1,
    silent: bool = True,
):
    msg = Printer(no_print=silent)
    if config["training"]["seed"] is not None:
        fix_random_seed(config["training"]["seed"])
    allocator = config["training"]["gpu_allocator"]
    if use_gpu >= 0 and allocator:
        set_gpu_allocator(allocator)
    nlp = load_model_from_config(config)
    _config = nlp.config.interpolate()
    P = registry.resolve(_config["pretraining"], schema=ConfigSchemaPretrain)
    corpus = dot_to_object(_config, P["corpus"])
    corpus = registry.resolve({"corpus": corpus})["corpus"]
    batcher = P["batcher"]
    model = create_pretraining_model(nlp, P)
    optimizer = P["optimizer"]
    # Load in pretrained weights to resume from
    if resume_path is not None:
        _resume_model(model, resume_path, epoch_resume, silent=silent)
    else:
        # Without '--resume-path' the '--epoch-resume' argument is ignored
        epoch_resume = 0
    objective = model.attrs["loss"]
    # TODO: move this to logger function?
    tracker = ProgressTracker(frequency=10000)
    if P["n_save_epoch"]:
        msg.divider(f"Pre-training tok2vec layer - starting at epoch {epoch_resume} - saving every {P['n_save_epoch']} epoch")
    else:
        msg.divider(f"Pre-training tok2vec layer - starting at epoch {epoch_resume}")
    row_settings = {"widths": (3, 10, 10, 6, 4), "aligns": ("r", "r", "r", "r", "r")}
    msg.row(("#", "# Words", "Total Loss", "Loss", "w/s"), **row_settings)

    def _save_model(epoch, is_temp=False):
        is_temp_str = ".temp" if is_temp else ""
        with model.use_params(optimizer.averages):
            with (output_dir / f"model{epoch}{is_temp_str}.bin").open("wb") as file_:
                file_.write(model.get_ref("tok2vec").to_bytes())
            log = {
                "nr_word": tracker.nr_word,
                "loss": tracker.loss,
                "epoch_loss": tracker.epoch_loss,
                "epoch": epoch,
            }
            with (output_dir / "log.jsonl").open("a") as file_:
                file_.write(srsly.json_dumps(log) + "\n")

    # TODO: I think we probably want this to look more like the
    # 'create_train_batches' function?
    for epoch in range(epoch_resume, P["max_epochs"]):
        for batch_id, batch in enumerate(batcher(corpus(nlp))):
            docs = ensure_docs(batch)
            loss = make_update(model, docs, optimizer, objective)
            progress = tracker.update(epoch, loss, docs)
            if progress:
                msg.row(progress, **row_settings)
            if P["n_save_every"] and (batch_id % P["n_save_every"] == 0):
                _save_model(epoch, is_temp=True)

        if P["n_save_epoch"]:
            if epoch % P["n_save_epoch"] == 0 or epoch == P["max_epochs"] - 1:
                _save_model(epoch)
        else:
            _save_model(epoch)
        tracker.epoch_loss = 0.0


def ensure_docs(examples_or_docs: Iterable[Union[Doc, Example]]) -> List[Doc]:
    docs = []
    for eg_or_doc in examples_or_docs:
        if isinstance(eg_or_doc, Doc):
            docs.append(eg_or_doc)
        else:
            docs.append(eg_or_doc.reference)
    return docs


def _resume_model(
    model: Model, resume_path: Path, epoch_resume: int, silent: bool = True
) -> None:
    msg = Printer(no_print=silent)
    msg.info(f"Resume training tok2vec from: {resume_path}")
    with resume_path.open("rb") as file_:
        weights_data = file_.read()
        model.get_ref("tok2vec").from_bytes(weights_data)
    # Parse the epoch number from the given weight file
    model_name = re.search(r"model\d+\.bin", str(resume_path))
    if model_name:
        # Default weight file name so read epoch_start from it by cutting off 'model' and '.bin'
        epoch_resume = int(model_name.group(0)[5:][:-4]) + 1
        msg.info(f"Resuming from epoch: {epoch_resume}")
    else:
        msg.info(f"Resuming from epoch: {epoch_resume}")


def make_update(
    model: Model, docs: Iterable[Doc], optimizer: Optimizer, objective_func: Callable
) -> float:
    """Perform an update over a single batch of documents.

    docs (iterable): A batch of `Doc` objects.
    optimizer (callable): An optimizer.
    RETURNS loss: A float for the loss.
    """
    predictions, backprop = model.begin_update(docs)
    loss, gradients = objective_func(model.ops, docs, predictions)
    backprop(gradients)
    model.finish_update(optimizer)
    # Don't want to return a cupy object here
    # The gradients are modified in-place by the BERT MLM,
    # so we get an accurate loss
    return float(loss)


def create_pretraining_model(nlp, pretrain_config):
    """Define a network for the pretraining. We simply add an output layer onto
    the tok2vec input model. The tok2vec input model needs to be a model that
    takes a batch of Doc objects (as a list), and returns a list of arrays.
    Each array in the output needs to have one row per token in the doc.
    The actual tok2vec layer is stored as a reference, and only this bit will be
    serialized to file and read back in when calling the 'train' command.
    """
    with nlp.select_pipes(enable=[]):
        nlp.initialize()
    tok2vec = get_tok2vec_ref(nlp, pretrain_config)
    # If the config referred to a Tok2VecListener, grab the original model instead
    if type(tok2vec).__name__ == "Tok2VecListener":
        original_tok2vec = (
            tok2vec.upstream_name if tok2vec.upstream_name != "*" else "tok2vec"
        )
        tok2vec = nlp.get_pipe(original_tok2vec).model
    try:
        tok2vec.initialize(X=[nlp.make_doc("Give it a doc to infer shapes")])
    except ValueError:
        component = pretrain_config["component"]
        layer = pretrain_config["layer"]
        raise ValueError(Errors.E874.format(component=component, layer=layer))

    create_function = pretrain_config["objective"]
    model = create_function(nlp.vocab, tok2vec)
    model.initialize(X=[nlp.make_doc("Give it a doc to infer shapes")])
    set_dropout_rate(model, pretrain_config["dropout"])
    return model


def get_tok2vec_ref(nlp, pretrain_config):
    tok2vec_component = pretrain_config["component"]
    if tok2vec_component is None:
        desc = (
            f"To use pretrained tok2vec weights, [pretraining.component] "
            f"needs to specify the component that should load them."
        )
        err = "component can't be null"
        errors = [{"loc": ["pretraining", "component"], "msg": err}]
        raise ConfigValidationError(
            config=nlp.config["pretraining"], errors=errors, desc=desc
        )
    layer = nlp.get_pipe(tok2vec_component).model
    if pretrain_config["layer"]:
        layer = layer.get_ref(pretrain_config["layer"])
    return layer


class ProgressTracker:
    def __init__(self, frequency=1000000):
        self.loss = 0.0
        self.prev_loss = 0.0
        self.nr_word = 0
        self.words_per_epoch = Counter()
        self.frequency = frequency
        self.last_time = time.time()
        self.last_update = 0
        self.epoch_loss = 0.0

    def update(self, epoch, loss, docs):
        self.loss += loss
        self.epoch_loss += loss
        words_in_batch = sum(len(doc) for doc in docs)
        self.words_per_epoch[epoch] += words_in_batch
        self.nr_word += words_in_batch
        words_since_update = self.nr_word - self.last_update
        if words_since_update >= self.frequency:
            wps = words_since_update / (time.time() - self.last_time)
            self.last_update = self.nr_word
            self.last_time = time.time()
            loss_per_word = self.loss - self.prev_loss
            status = (
                epoch,
                self.nr_word,
                _smart_round(self.loss, width=10),
                _smart_round(loss_per_word, width=6),
                int(wps),
            )
            self.prev_loss = float(self.loss)
            return status
        else:
            return None


def _smart_round(
    figure: Union[float, int], width: int = 10, max_decimal: int = 4
) -> str:
    """Round large numbers as integers, smaller numbers as decimals."""
    n_digits = len(str(int(figure)))
    n_decimal = width - (n_digits + 1)
    if n_decimal <= 1:
        return str(int(figure))
    else:
        n_decimal = min(n_decimal, max_decimal)
        format_str = "%." + str(n_decimal) + "f"
        return format_str % figure