2020-07-22 14:42:59 +03:00
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# cython: infer_types=True, profile=True, binding=True
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2020-09-08 23:44:25 +03:00
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from itertools import islice
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2020-07-22 14:42:59 +03:00
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import srsly
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from thinc.api import Model, SequenceCategoricalCrossentropy, Config
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from ..tokens.doc cimport Doc
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from .pipe import deserialize_config
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from .tagger import Tagger
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from ..language import Language
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from ..errors import Errors
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Refactor the Scorer to improve flexibility (#5731)
* Refactor the Scorer to improve flexibility
Refactor the `Scorer` to improve flexibility for arbitrary pipeline
components.
* Individual pipeline components provide their own `evaluate` methods
that score a list of `Example`s and return a dictionary of scores
* `Scorer` is initialized either:
* with a provided pipeline containing components to be scored
* with a default pipeline containing the built-in statistical
components (senter, tagger, morphologizer, parser, ner)
* `Scorer.score` evaluates a list of `Example`s and returns a dictionary
of scores referring to the scores provided by the components in the
pipeline
Significant differences:
* `tags_acc` is renamed to `tag_acc` to be consistent with `token_acc`
and the new `morph_acc`, `pos_acc`, and `lemma_acc`
* Scoring is no longer cumulative: `Scorer.score` scores a list of
examples rather than a single example and does not retain any state
about previously scored examples
* PRF values in the returned scores are no longer multiplied by 100
* Add kwargs to Morphologizer.evaluate
* Create generalized scoring methods in Scorer
* Generalized static scoring methods are added to `Scorer`
* Methods require an attribute (either on Token or Doc) that is
used to key the returned scores
Naming differences:
* `uas`, `las`, and `las_per_type` in the scores dict are renamed to
`dep_uas`, `dep_las`, and `dep_las_per_type`
Scoring differences:
* `Doc.sents` is now scored as spans rather than on sentence-initial
token positions so that `Doc.sents` and `Doc.ents` can be scored with
the same method (this lowers scores since a single incorrect sentence
start results in two incorrect spans)
* Simplify / extend hasattr check for eval method
* Add hasattr check to tokenizer scoring
* Simplify to hasattr check for component scoring
* Reset Example alignment if docs are set
Reset the Example alignment if either doc is set in case the
tokenization has changed.
* Add PRF tokenization scoring for tokens as spans
Add PRF scores for tokens as character spans. The scores are:
* token_acc: # correct tokens / # gold tokens
* token_p/r/f: PRF for (token.idx, token.idx + len(token))
* Add docstring to Scorer.score_tokenization
* Rename component.evaluate() to component.score()
* Update Scorer API docs
* Update scoring for positive_label in textcat
* Fix TextCategorizer.score kwargs
* Update Language.evaluate docs
* Update score names in default config
2020-07-25 13:53:02 +03:00
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from ..scorer import Scorer
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2020-09-09 11:31:03 +03:00
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from ..training import validate_examples
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2020-07-22 14:42:59 +03:00
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from .. import util
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default_model_config = """
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[model]
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@architectures = "spacy.Tagger.v1"
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[model.tok2vec]
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@architectures = "spacy.HashEmbedCNN.v1"
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pretrained_vectors = null
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width = 12
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depth = 1
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embed_size = 2000
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window_size = 1
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maxout_pieces = 2
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subword_features = true
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"""
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DEFAULT_SENTER_MODEL = Config().from_str(default_model_config)["model"]
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@Language.factory(
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"senter",
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assigns=["token.is_sent_start"],
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2020-07-26 14:18:43 +03:00
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default_config={"model": DEFAULT_SENTER_MODEL},
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scores=["sents_p", "sents_r", "sents_f"],
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2020-07-27 13:27:40 +03:00
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default_score_weights={"sents_f": 1.0, "sents_p": 0.0, "sents_r": 0.0},
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2020-07-22 14:42:59 +03:00
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)
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def make_senter(nlp: Language, name: str, model: Model):
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return SentenceRecognizer(nlp.vocab, model, name)
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class SentenceRecognizer(Tagger):
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"""Pipeline component for sentence segmentation.
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2020-09-04 13:58:50 +03:00
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DOCS: https://nightly.spacy.io/api/sentencerecognizer
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2020-07-22 14:42:59 +03:00
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"""
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def __init__(self, vocab, model, name="senter"):
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2020-07-27 19:11:45 +03:00
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"""Initialize a sentence recognizer.
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vocab (Vocab): The shared vocabulary.
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model (thinc.api.Model): The Thinc Model powering the pipeline component.
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name (str): The component instance name, used to add entries to the
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losses during training.
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2020-09-04 13:58:50 +03:00
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DOCS: https://nightly.spacy.io/api/sentencerecognizer#init
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2020-07-27 19:11:45 +03:00
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"""
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2020-07-22 14:42:59 +03:00
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self.vocab = vocab
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self.model = model
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self.name = name
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self._rehearsal_model = None
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self.cfg = {}
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@property
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def labels(self):
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"""RETURNS (Tuple[str]): The labels."""
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2020-07-22 14:42:59 +03:00
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# labels are numbered by index internally, so this matches GoldParse
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# and Example where the sentence-initial tag is 1 and other positions
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# are 0
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return tuple(["I", "S"])
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def set_annotations(self, docs, batch_tag_ids):
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2020-07-27 19:11:45 +03:00
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"""Modify a batch of documents, using pre-computed scores.
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docs (Iterable[Doc]): The documents to modify.
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batch_tag_ids: The IDs to set, produced by SentenceRecognizer.predict.
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2020-09-04 13:58:50 +03:00
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DOCS: https://nightly.spacy.io/api/sentencerecognizer#set_annotations
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2020-07-27 19:11:45 +03:00
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"""
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2020-07-22 14:42:59 +03:00
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if isinstance(docs, Doc):
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docs = [docs]
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cdef Doc doc
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for i, doc in enumerate(docs):
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doc_tag_ids = batch_tag_ids[i]
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if hasattr(doc_tag_ids, "get"):
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doc_tag_ids = doc_tag_ids.get()
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for j, tag_id in enumerate(doc_tag_ids):
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# Don't clobber existing sentence boundaries
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if doc.c[j].sent_start == 0:
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if tag_id == 1:
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doc.c[j].sent_start = 1
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else:
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doc.c[j].sent_start = -1
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def get_loss(self, examples, scores):
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2020-07-27 19:11:45 +03:00
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"""Find the loss and gradient of loss for the batch of documents and
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their predicted scores.
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examples (Iterable[Examples]): The batch of examples.
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scores: Scores representing the model's predictions.
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RETUTNRS (Tuple[float, float]): The loss and the gradient.
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2020-09-04 13:58:50 +03:00
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DOCS: https://nightly.spacy.io/api/sentencerecognizer#get_loss
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2020-07-27 19:11:45 +03:00
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"""
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2020-08-12 00:29:31 +03:00
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validate_examples(examples, "SentenceRecognizer.get_loss")
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2020-07-22 14:42:59 +03:00
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labels = self.labels
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loss_func = SequenceCategoricalCrossentropy(names=labels, normalize=False)
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truths = []
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for eg in examples:
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eg_truth = []
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2020-08-04 23:22:26 +03:00
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for x in eg.get_aligned("SENT_START"):
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2020-07-31 00:30:54 +03:00
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if x is None:
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2020-07-22 14:42:59 +03:00
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eg_truth.append(None)
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elif x == 1:
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eg_truth.append(labels[1])
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else:
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# anything other than 1: 0, -1, -1 as uint64
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eg_truth.append(labels[0])
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truths.append(eg_truth)
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d_scores, loss = loss_func(scores, truths)
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if self.model.ops.xp.isnan(loss):
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raise ValueError("nan value when computing loss")
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return float(loss), d_scores
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2020-08-12 00:29:31 +03:00
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def begin_training(self, get_examples, *, pipeline=None, sgd=None):
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2020-09-08 23:44:25 +03:00
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"""Initialize the pipe for training, using a representative set
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of data examples.
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2020-07-27 19:11:45 +03:00
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2020-09-08 23:44:25 +03:00
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get_examples (Callable[[], Iterable[Example]]): Function that
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returns a representative sample of gold-standard Example objects.
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2020-07-27 19:11:45 +03:00
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pipeline (List[Tuple[str, Callable]]): Optional list of pipeline
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components that this component is part of. Corresponds to
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nlp.pipeline.
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sgd (thinc.api.Optimizer): Optional optimizer. Will be created with
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create_optimizer if it doesn't exist.
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RETURNS (thinc.api.Optimizer): The optimizer.
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2020-09-04 13:58:50 +03:00
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DOCS: https://nightly.spacy.io/api/sentencerecognizer#begin_training
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2020-07-27 19:11:45 +03:00
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"""
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2020-09-08 23:44:25 +03:00
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self._ensure_examples(get_examples)
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doc_sample = []
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label_sample = []
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assert self.labels, Errors.E924.format(name=self.name)
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for example in islice(get_examples(), 10):
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doc_sample.append(example.x)
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gold_tags = example.get_aligned("SENT_START")
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gold_array = [[1.0 if tag == gold_tag else 0.0 for tag in self.labels] for gold_tag in gold_tags]
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label_sample.append(self.model.ops.asarray(gold_array, dtype="float32"))
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assert len(doc_sample) > 0, Errors.E923.format(name=self.name)
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assert len(label_sample) > 0, Errors.E923.format(name=self.name)
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self.model.initialize(X=doc_sample, Y=label_sample)
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2020-07-22 14:42:59 +03:00
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if sgd is None:
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sgd = self.create_optimizer()
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return sgd
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def add_label(self, label, values=None):
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raise NotImplementedError
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Refactor the Scorer to improve flexibility (#5731)
* Refactor the Scorer to improve flexibility
Refactor the `Scorer` to improve flexibility for arbitrary pipeline
components.
* Individual pipeline components provide their own `evaluate` methods
that score a list of `Example`s and return a dictionary of scores
* `Scorer` is initialized either:
* with a provided pipeline containing components to be scored
* with a default pipeline containing the built-in statistical
components (senter, tagger, morphologizer, parser, ner)
* `Scorer.score` evaluates a list of `Example`s and returns a dictionary
of scores referring to the scores provided by the components in the
pipeline
Significant differences:
* `tags_acc` is renamed to `tag_acc` to be consistent with `token_acc`
and the new `morph_acc`, `pos_acc`, and `lemma_acc`
* Scoring is no longer cumulative: `Scorer.score` scores a list of
examples rather than a single example and does not retain any state
about previously scored examples
* PRF values in the returned scores are no longer multiplied by 100
* Add kwargs to Morphologizer.evaluate
* Create generalized scoring methods in Scorer
* Generalized static scoring methods are added to `Scorer`
* Methods require an attribute (either on Token or Doc) that is
used to key the returned scores
Naming differences:
* `uas`, `las`, and `las_per_type` in the scores dict are renamed to
`dep_uas`, `dep_las`, and `dep_las_per_type`
Scoring differences:
* `Doc.sents` is now scored as spans rather than on sentence-initial
token positions so that `Doc.sents` and `Doc.ents` can be scored with
the same method (this lowers scores since a single incorrect sentence
start results in two incorrect spans)
* Simplify / extend hasattr check for eval method
* Add hasattr check to tokenizer scoring
* Simplify to hasattr check for component scoring
* Reset Example alignment if docs are set
Reset the Example alignment if either doc is set in case the
tokenization has changed.
* Add PRF tokenization scoring for tokens as spans
Add PRF scores for tokens as character spans. The scores are:
* token_acc: # correct tokens / # gold tokens
* token_p/r/f: PRF for (token.idx, token.idx + len(token))
* Add docstring to Scorer.score_tokenization
* Rename component.evaluate() to component.score()
* Update Scorer API docs
* Update scoring for positive_label in textcat
* Fix TextCategorizer.score kwargs
* Update Language.evaluate docs
* Update score names in default config
2020-07-25 13:53:02 +03:00
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def score(self, examples, **kwargs):
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2020-07-27 19:11:45 +03:00
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"""Score a batch of examples.
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examples (Iterable[Example]): The examples to score.
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RETURNS (Dict[str, Any]): The scores, produced by Scorer.score_spans.
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2020-09-04 13:58:50 +03:00
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DOCS: https://nightly.spacy.io/api/sentencerecognizer#score
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2020-07-27 19:11:45 +03:00
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"""
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2020-08-12 00:29:31 +03:00
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validate_examples(examples, "SentenceRecognizer.score")
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2020-07-27 13:27:40 +03:00
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results = Scorer.score_spans(examples, "sents", **kwargs)
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del results["sents_per_type"]
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return results
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Refactor the Scorer to improve flexibility (#5731)
* Refactor the Scorer to improve flexibility
Refactor the `Scorer` to improve flexibility for arbitrary pipeline
components.
* Individual pipeline components provide their own `evaluate` methods
that score a list of `Example`s and return a dictionary of scores
* `Scorer` is initialized either:
* with a provided pipeline containing components to be scored
* with a default pipeline containing the built-in statistical
components (senter, tagger, morphologizer, parser, ner)
* `Scorer.score` evaluates a list of `Example`s and returns a dictionary
of scores referring to the scores provided by the components in the
pipeline
Significant differences:
* `tags_acc` is renamed to `tag_acc` to be consistent with `token_acc`
and the new `morph_acc`, `pos_acc`, and `lemma_acc`
* Scoring is no longer cumulative: `Scorer.score` scores a list of
examples rather than a single example and does not retain any state
about previously scored examples
* PRF values in the returned scores are no longer multiplied by 100
* Add kwargs to Morphologizer.evaluate
* Create generalized scoring methods in Scorer
* Generalized static scoring methods are added to `Scorer`
* Methods require an attribute (either on Token or Doc) that is
used to key the returned scores
Naming differences:
* `uas`, `las`, and `las_per_type` in the scores dict are renamed to
`dep_uas`, `dep_las`, and `dep_las_per_type`
Scoring differences:
* `Doc.sents` is now scored as spans rather than on sentence-initial
token positions so that `Doc.sents` and `Doc.ents` can be scored with
the same method (this lowers scores since a single incorrect sentence
start results in two incorrect spans)
* Simplify / extend hasattr check for eval method
* Add hasattr check to tokenizer scoring
* Simplify to hasattr check for component scoring
* Reset Example alignment if docs are set
Reset the Example alignment if either doc is set in case the
tokenization has changed.
* Add PRF tokenization scoring for tokens as spans
Add PRF scores for tokens as character spans. The scores are:
* token_acc: # correct tokens / # gold tokens
* token_p/r/f: PRF for (token.idx, token.idx + len(token))
* Add docstring to Scorer.score_tokenization
* Rename component.evaluate() to component.score()
* Update Scorer API docs
* Update scoring for positive_label in textcat
* Fix TextCategorizer.score kwargs
* Update Language.evaluate docs
* Update score names in default config
2020-07-25 13:53:02 +03:00
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2020-07-29 16:14:07 +03:00
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def to_bytes(self, *, exclude=tuple()):
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2020-07-27 19:11:45 +03:00
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"""Serialize the pipe to a bytestring.
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exclude (Iterable[str]): String names of serialization fields to exclude.
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RETURNS (bytes): The serialized object.
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2020-09-04 13:58:50 +03:00
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DOCS: https://nightly.spacy.io/api/sentencerecognizer#to_bytes
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2020-07-27 19:11:45 +03:00
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"""
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2020-07-22 14:42:59 +03:00
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serialize = {}
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serialize["model"] = self.model.to_bytes
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serialize["vocab"] = self.vocab.to_bytes
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serialize["cfg"] = lambda: srsly.json_dumps(self.cfg)
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return util.to_bytes(serialize, exclude)
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2020-07-29 16:14:07 +03:00
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def from_bytes(self, bytes_data, *, exclude=tuple()):
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2020-07-27 19:11:45 +03:00
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"""Load the pipe from a bytestring.
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bytes_data (bytes): The serialized pipe.
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exclude (Iterable[str]): String names of serialization fields to exclude.
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RETURNS (Tagger): The loaded SentenceRecognizer.
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2020-09-04 13:58:50 +03:00
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DOCS: https://nightly.spacy.io/api/sentencerecognizer#from_bytes
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2020-07-27 19:11:45 +03:00
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"""
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2020-07-22 14:42:59 +03:00
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def load_model(b):
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try:
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self.model.from_bytes(b)
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except AttributeError:
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2020-08-06 00:53:21 +03:00
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raise ValueError(Errors.E149) from None
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2020-07-22 14:42:59 +03:00
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deserialize = {
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"vocab": lambda b: self.vocab.from_bytes(b),
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"cfg": lambda b: self.cfg.update(srsly.json_loads(b)),
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"model": lambda b: load_model(b),
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}
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util.from_bytes(bytes_data, deserialize, exclude)
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return self
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2020-07-29 16:14:07 +03:00
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def to_disk(self, path, *, exclude=tuple()):
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2020-07-27 19:11:45 +03:00
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"""Serialize the pipe to disk.
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path (str / Path): Path to a directory.
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exclude (Iterable[str]): String names of serialization fields to exclude.
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2020-09-04 13:58:50 +03:00
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DOCS: https://nightly.spacy.io/api/sentencerecognizer#to_disk
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2020-07-27 19:11:45 +03:00
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"""
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2020-07-22 14:42:59 +03:00
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serialize = {
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"vocab": lambda p: self.vocab.to_disk(p),
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"model": lambda p: p.open("wb").write(self.model.to_bytes()),
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"cfg": lambda p: srsly.write_json(p, self.cfg),
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}
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util.to_disk(path, serialize, exclude)
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2020-07-29 16:14:07 +03:00
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def from_disk(self, path, *, exclude=tuple()):
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2020-07-27 19:11:45 +03:00
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"""Load the pipe from disk. Modifies the object in place and returns it.
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path (str / Path): Path to a directory.
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exclude (Iterable[str]): String names of serialization fields to exclude.
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RETURNS (Tagger): The modified SentenceRecognizer object.
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2020-09-04 13:58:50 +03:00
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DOCS: https://nightly.spacy.io/api/sentencerecognizer#from_disk
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2020-07-27 19:11:45 +03:00
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"""
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2020-07-22 14:42:59 +03:00
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def load_model(p):
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with p.open("rb") as file_:
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try:
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self.model.from_bytes(file_.read())
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except AttributeError:
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2020-08-06 00:53:21 +03:00
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raise ValueError(Errors.E149) from None
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2020-07-22 14:42:59 +03:00
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deserialize = {
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"vocab": lambda p: self.vocab.from_disk(p),
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"cfg": lambda p: self.cfg.update(deserialize_config(p)),
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"model": load_model,
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}
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util.from_disk(path, deserialize, exclude)
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return self
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