2020-09-21 17:58:40 +03:00
|
|
|
from typing import Dict, Any, Optional, Iterable
|
2020-07-10 20:47:53 +03:00
|
|
|
from pathlib import Path
|
2020-09-22 00:09:22 +03:00
|
|
|
|
|
|
|
from spacy.training import Example
|
2020-09-29 21:38:35 +03:00
|
|
|
from spacy.util import resolve_dot_names
|
2020-07-10 20:47:53 +03:00
|
|
|
from wasabi import msg
|
2020-09-28 16:09:59 +03:00
|
|
|
from thinc.api import fix_random_seed, set_dropout_rate, Adam
|
2020-09-19 02:17:02 +03:00
|
|
|
from thinc.api import Model, data_validation, set_gpu_allocator
|
2020-07-22 14:42:59 +03:00
|
|
|
import typer
|
2020-07-10 20:47:53 +03:00
|
|
|
|
2020-09-13 11:55:36 +03:00
|
|
|
from ._util import Arg, Opt, debug_cli, show_validation_error
|
2020-09-28 16:09:59 +03:00
|
|
|
from ._util import parse_config_overrides, string_to_list, setup_gpu
|
|
|
|
from ..schemas import ConfigSchemaTraining
|
|
|
|
from ..util import registry
|
2020-07-10 20:47:53 +03:00
|
|
|
from .. import util
|
|
|
|
|
|
|
|
|
2020-09-29 21:38:35 +03:00
|
|
|
@debug_cli.command(
|
|
|
|
"model",
|
|
|
|
context_settings={"allow_extra_args": True, "ignore_unknown_options": True},
|
|
|
|
)
|
2020-07-10 20:47:53 +03:00
|
|
|
def debug_model_cli(
|
|
|
|
# fmt: off
|
2020-07-22 14:42:59 +03:00
|
|
|
ctx: typer.Context, # This is only used to read additional arguments
|
2020-07-10 20:47:53 +03:00
|
|
|
config_path: Path = Arg(..., help="Path to config file", exists=True),
|
2020-07-31 18:58:55 +03:00
|
|
|
component: str = Arg(..., help="Name of the pipeline component of which the model should be analysed"),
|
2020-07-22 14:42:59 +03:00
|
|
|
layers: str = Opt("", "--layers", "-l", help="Comma-separated names of layer IDs to print"),
|
2020-07-10 20:47:53 +03:00
|
|
|
dimensions: bool = Opt(False, "--dimensions", "-DIM", help="Show dimensions"),
|
|
|
|
parameters: bool = Opt(False, "--parameters", "-PAR", help="Show parameters"),
|
|
|
|
gradients: bool = Opt(False, "--gradients", "-GRAD", help="Show gradients"),
|
|
|
|
attributes: bool = Opt(False, "--attributes", "-ATTR", help="Show attributes"),
|
|
|
|
P0: bool = Opt(False, "--print-step0", "-P0", help="Print model before training"),
|
|
|
|
P1: bool = Opt(False, "--print-step1", "-P1", help="Print model after initialization"),
|
|
|
|
P2: bool = Opt(False, "--print-step2", "-P2", help="Print model after training"),
|
2020-07-31 18:36:32 +03:00
|
|
|
P3: bool = Opt(False, "--print-step3", "-P3", help="Print final predictions"),
|
2020-07-22 17:53:41 +03:00
|
|
|
use_gpu: int = Opt(-1, "--gpu-id", "-g", help="GPU ID or -1 for CPU")
|
2020-07-10 20:47:53 +03:00
|
|
|
# fmt: on
|
|
|
|
):
|
|
|
|
"""
|
2020-07-12 14:53:41 +03:00
|
|
|
Analyze a Thinc model implementation. Includes checks for internal structure
|
|
|
|
and activations during training.
|
2020-09-04 13:58:50 +03:00
|
|
|
|
|
|
|
DOCS: https://nightly.spacy.io/api/cli#debug-model
|
2020-07-10 20:47:53 +03:00
|
|
|
"""
|
2020-09-28 16:09:59 +03:00
|
|
|
setup_gpu(use_gpu)
|
2020-09-12 15:43:22 +03:00
|
|
|
layers = string_to_list(layers, intify=True)
|
2020-07-10 20:47:53 +03:00
|
|
|
print_settings = {
|
|
|
|
"dimensions": dimensions,
|
|
|
|
"parameters": parameters,
|
|
|
|
"gradients": gradients,
|
|
|
|
"attributes": attributes,
|
2020-09-12 15:43:22 +03:00
|
|
|
"layers": layers,
|
2020-07-10 20:47:53 +03:00
|
|
|
"print_before_training": P0,
|
|
|
|
"print_after_init": P1,
|
|
|
|
"print_after_training": P2,
|
|
|
|
"print_prediction": P3,
|
|
|
|
}
|
2020-07-22 14:42:59 +03:00
|
|
|
config_overrides = parse_config_overrides(ctx.args)
|
2020-08-02 16:18:30 +03:00
|
|
|
with show_validation_error(config_path):
|
2020-09-27 23:21:31 +03:00
|
|
|
raw_config = util.load_config(
|
|
|
|
config_path, overrides=config_overrides, interpolate=False
|
2020-09-19 02:17:02 +03:00
|
|
|
)
|
2020-09-29 21:38:35 +03:00
|
|
|
config = raw_config.interpolate()
|
2020-09-27 23:21:31 +03:00
|
|
|
allocator = config["training"]["gpu_allocator"]
|
|
|
|
if use_gpu >= 0 and allocator:
|
|
|
|
set_gpu_allocator(allocator)
|
|
|
|
with show_validation_error(config_path):
|
|
|
|
nlp = util.load_model_from_config(raw_config)
|
2020-09-29 21:38:35 +03:00
|
|
|
config = nlp.config.interpolate()
|
|
|
|
T = registry.resolve(config["training"], schema=ConfigSchemaTraining)
|
2020-09-28 16:09:59 +03:00
|
|
|
seed = T["seed"]
|
2020-07-10 20:47:53 +03:00
|
|
|
if seed is not None:
|
|
|
|
msg.info(f"Fixing random seed: {seed}")
|
|
|
|
fix_random_seed(seed)
|
2020-07-31 18:58:55 +03:00
|
|
|
pipe = nlp.get_pipe(component)
|
2020-09-17 23:34:36 +03:00
|
|
|
if not hasattr(pipe, "model"):
|
2020-07-22 14:42:59 +03:00
|
|
|
msg.fail(
|
2020-07-31 18:58:55 +03:00
|
|
|
f"The component '{component}' does not specify an object that holds a Model.",
|
2020-07-22 14:42:59 +03:00
|
|
|
exits=1,
|
|
|
|
)
|
2020-09-17 23:34:36 +03:00
|
|
|
model = pipe.model
|
2020-09-29 21:38:35 +03:00
|
|
|
debug_model(config, T, nlp, model, print_settings=print_settings)
|
2020-07-22 14:42:59 +03:00
|
|
|
|
|
|
|
|
2020-09-22 00:17:23 +03:00
|
|
|
def debug_model(
|
2020-09-29 21:38:35 +03:00
|
|
|
config,
|
|
|
|
resolved_train_config,
|
|
|
|
nlp,
|
|
|
|
model: Model,
|
|
|
|
*,
|
|
|
|
print_settings: Optional[Dict[str, Any]] = None,
|
2020-09-22 00:17:23 +03:00
|
|
|
):
|
2020-07-22 14:42:59 +03:00
|
|
|
if not isinstance(model, Model):
|
|
|
|
msg.fail(
|
|
|
|
f"Requires a Thinc Model to be analysed, but found {type(model)} instead.",
|
|
|
|
exits=1,
|
|
|
|
)
|
2020-07-10 20:47:53 +03:00
|
|
|
if print_settings is None:
|
|
|
|
print_settings = {}
|
|
|
|
|
|
|
|
# STEP 0: Printing before training
|
|
|
|
msg.info(f"Analysing model with ID {model.id}")
|
|
|
|
if print_settings.get("print_before_training"):
|
2020-07-31 19:06:48 +03:00
|
|
|
msg.divider(f"STEP 0 - before training")
|
2020-07-10 20:47:53 +03:00
|
|
|
_print_model(model, print_settings)
|
|
|
|
|
|
|
|
# STEP 1: Initializing the model and printing again
|
2020-09-08 23:44:25 +03:00
|
|
|
X = _get_docs()
|
2020-07-31 17:49:42 +03:00
|
|
|
# The output vector might differ from the official type of the output layer
|
|
|
|
with data_validation(False):
|
2020-09-22 00:09:22 +03:00
|
|
|
try:
|
2020-09-29 21:38:35 +03:00
|
|
|
dot_names = [resolved_train_config["train_corpus"]]
|
|
|
|
with show_validation_error():
|
|
|
|
(train_corpus,) = resolve_dot_names(config, dot_names)
|
|
|
|
nlp.initialize(lambda: train_corpus(nlp))
|
2020-09-22 00:09:22 +03:00
|
|
|
msg.info("Initialized the model with the training corpus.")
|
|
|
|
except ValueError:
|
|
|
|
try:
|
|
|
|
_set_output_dim(nO=7, model=model)
|
2020-09-29 21:38:35 +03:00
|
|
|
with show_validation_error():
|
|
|
|
nlp.initialize(lambda: [Example.from_dict(x, {}) for x in X])
|
2020-09-22 00:09:22 +03:00
|
|
|
msg.info("Initialized the model with dummy data.")
|
2020-09-27 23:21:31 +03:00
|
|
|
except Exception:
|
2020-09-22 00:17:23 +03:00
|
|
|
msg.fail(
|
|
|
|
"Could not initialize the model: you'll have to provide a valid train_corpus argument in the config file.",
|
|
|
|
exits=1,
|
|
|
|
)
|
2020-09-22 00:09:22 +03:00
|
|
|
|
2020-07-10 20:47:53 +03:00
|
|
|
if print_settings.get("print_after_init"):
|
2020-07-31 19:06:48 +03:00
|
|
|
msg.divider(f"STEP 1 - after initialization")
|
2020-07-10 20:47:53 +03:00
|
|
|
_print_model(model, print_settings)
|
|
|
|
|
|
|
|
# STEP 2: Updating the model and printing again
|
|
|
|
optimizer = Adam(0.001)
|
|
|
|
set_dropout_rate(model, 0.2)
|
2020-09-18 17:43:15 +03:00
|
|
|
# ugly hack to deal with Tok2Vec listeners
|
|
|
|
tok2vec = None
|
|
|
|
if model.has_ref("tok2vec") and model.get_ref("tok2vec").name == "tok2vec-listener":
|
|
|
|
tok2vec = nlp.get_pipe("tok2vec")
|
2020-09-21 17:58:40 +03:00
|
|
|
goldY = None
|
2020-07-10 20:47:53 +03:00
|
|
|
for e in range(3):
|
2020-09-18 17:43:15 +03:00
|
|
|
if tok2vec:
|
2020-09-22 22:54:52 +03:00
|
|
|
tok2vec.update([Example.from_dict(x, {}) for x in X])
|
2020-09-18 17:43:15 +03:00
|
|
|
Y, get_dX = model.begin_update(X)
|
2020-09-22 00:09:22 +03:00
|
|
|
if goldY is None:
|
2020-09-21 17:58:40 +03:00
|
|
|
goldY = _simulate_gold(Y)
|
|
|
|
dY = get_gradient(goldY, Y, model.ops)
|
2020-07-10 21:52:00 +03:00
|
|
|
get_dX(dY)
|
2020-07-10 20:47:53 +03:00
|
|
|
model.finish_update(optimizer)
|
|
|
|
if print_settings.get("print_after_training"):
|
2020-07-31 19:06:48 +03:00
|
|
|
msg.divider(f"STEP 2 - after training")
|
2020-07-10 20:47:53 +03:00
|
|
|
_print_model(model, print_settings)
|
|
|
|
|
|
|
|
# STEP 3: the final prediction
|
2020-09-18 17:43:15 +03:00
|
|
|
prediction = model.predict(X)
|
2020-07-10 20:47:53 +03:00
|
|
|
if print_settings.get("print_prediction"):
|
2020-07-31 19:06:48 +03:00
|
|
|
msg.divider(f"STEP 3 - prediction")
|
|
|
|
msg.info(str(prediction))
|
2020-07-10 20:47:53 +03:00
|
|
|
|
2020-09-21 17:58:40 +03:00
|
|
|
msg.good(f"Succesfully ended analysis - model looks good.")
|
2020-09-17 23:34:36 +03:00
|
|
|
|
2020-07-10 20:47:53 +03:00
|
|
|
|
2020-09-22 00:17:23 +03:00
|
|
|
def get_gradient(goldY, Y, ops):
|
|
|
|
return ops.asarray(Y) - ops.asarray(goldY)
|
|
|
|
|
|
|
|
|
2020-09-21 17:58:40 +03:00
|
|
|
def _simulate_gold(element, counter=1):
|
|
|
|
if isinstance(element, Iterable):
|
|
|
|
for i in range(len(element)):
|
2020-09-22 00:17:23 +03:00
|
|
|
element[i] = _simulate_gold(element[i], counter + i)
|
2020-09-21 17:58:40 +03:00
|
|
|
return element
|
|
|
|
else:
|
2020-09-22 00:17:23 +03:00
|
|
|
return 1 / counter
|
2020-07-10 20:47:53 +03:00
|
|
|
|
|
|
|
|
|
|
|
def _sentences():
|
|
|
|
return [
|
|
|
|
"Apple is looking at buying U.K. startup for $1 billion",
|
|
|
|
"Autonomous cars shift insurance liability toward manufacturers",
|
|
|
|
"San Francisco considers banning sidewalk delivery robots",
|
|
|
|
"London is a big city in the United Kingdom.",
|
|
|
|
]
|
|
|
|
|
|
|
|
|
2020-08-05 17:00:59 +03:00
|
|
|
def _get_docs(lang: str = "en"):
|
|
|
|
nlp = util.get_lang_class(lang)()
|
2020-07-10 20:47:53 +03:00
|
|
|
return list(nlp.pipe(_sentences()))
|
|
|
|
|
|
|
|
|
2020-09-21 17:58:40 +03:00
|
|
|
def _set_output_dim(model, nO):
|
|
|
|
# simulating dim inference by directly setting the nO argument of the model
|
|
|
|
if model.has_dim("nO") is None:
|
|
|
|
model.set_dim("nO", nO)
|
|
|
|
if model.has_ref("output_layer"):
|
|
|
|
if model.get_ref("output_layer").has_dim("nO") is None:
|
|
|
|
model.get_ref("output_layer").set_dim("nO", nO)
|
2020-09-19 20:11:30 +03:00
|
|
|
|
|
|
|
|
2020-07-10 20:47:53 +03:00
|
|
|
def _print_model(model, print_settings):
|
|
|
|
layers = print_settings.get("layers", "")
|
|
|
|
parameters = print_settings.get("parameters", False)
|
|
|
|
dimensions = print_settings.get("dimensions", False)
|
|
|
|
gradients = print_settings.get("gradients", False)
|
|
|
|
attributes = print_settings.get("attributes", False)
|
|
|
|
|
|
|
|
for i, node in enumerate(model.walk()):
|
|
|
|
if not layers or i in layers:
|
|
|
|
msg.info(f"Layer {i}: model ID {node.id}: '{node.name}'")
|
|
|
|
|
|
|
|
if dimensions:
|
|
|
|
for name in node.dim_names:
|
|
|
|
if node.has_dim(name):
|
|
|
|
msg.info(f" - dim {name}: {node.get_dim(name)}")
|
|
|
|
else:
|
|
|
|
msg.info(f" - dim {name}: {node.has_dim(name)}")
|
|
|
|
|
|
|
|
if parameters:
|
|
|
|
for name in node.param_names:
|
|
|
|
if node.has_param(name):
|
|
|
|
print_value = _print_matrix(node.get_param(name))
|
|
|
|
msg.info(f" - param {name}: {print_value}")
|
|
|
|
else:
|
|
|
|
msg.info(f" - param {name}: {node.has_param(name)}")
|
|
|
|
if gradients:
|
|
|
|
for name in node.param_names:
|
|
|
|
if node.has_grad(name):
|
|
|
|
print_value = _print_matrix(node.get_grad(name))
|
|
|
|
msg.info(f" - grad {name}: {print_value}")
|
|
|
|
else:
|
|
|
|
msg.info(f" - grad {name}: {node.has_grad(name)}")
|
|
|
|
if attributes:
|
|
|
|
attrs = node.attrs
|
|
|
|
for name, value in attrs.items():
|
|
|
|
msg.info(f" - attr {name}: {value}")
|
|
|
|
|
|
|
|
|
|
|
|
def _print_matrix(value):
|
|
|
|
if value is None or isinstance(value, bool):
|
|
|
|
return value
|
|
|
|
result = str(value.shape) + " - sample: "
|
|
|
|
sample_matrix = value
|
2020-07-10 21:52:00 +03:00
|
|
|
for d in range(value.ndim - 1):
|
2020-07-10 20:47:53 +03:00
|
|
|
sample_matrix = sample_matrix[0]
|
|
|
|
sample_matrix = sample_matrix[0:5]
|
|
|
|
result = result + str(sample_matrix)
|
|
|
|
return result
|