Tmp

bin/parser/conll_train.py

@@ -163,26 +163,43 @@ def train(Language, gold_tuples, model_dir, dev_loc, n_iter=15, feat_set=u'basic
     nr_trimmed = 0
     eg_seen = 0
     loss = 0
+    micro_eval = gold_tuples[:50]
     for itn in range(n_iter):
-        random.shuffle(gold_tuples)
+        try:
-        for _, sents in gold_tuples:
+            eg_seen = _train_epoch(nlp, gold_tuples, eg_seen, itn,
-            for annot_tuples, _ in sents:
+                                   dev_loc, micro_eval)
-                tokens = nlp.tokenizer.tokens_from_list(annot_tuples[1])
+        except KeyboardInterrupt:
-                nlp.tagger.tag_from_strings(tokens, annot_tuples[2])
+            print("Saving model...")
-                gold = GoldParse(tokens, annot_tuples)
+            break
-                loss += nlp.parser.train(tokens, gold)
+    #nlp.end_training(model_dir)
-                
+    nlp.parser.model.end_training()
-                eg_seen += 1
+    print("Saved. Evaluating...")
-                if eg_seen % 10000 == 0:
-                    dev_uas = score_file(nlp, dev_loc).uas
-                    train_uas = score_sents(nlp, gold_tuples[:1000]).uas
-                    size = nlp.parser.model.mem.size
-                    print('%d:\t%d\t%.3f\t%.3f\t%.3f\t%d' % (itn, int(loss), nr_trimmed,
-                                                             train_uas, dev_uas, size))
-                    loss = 0
-    nlp.end_training(model_dir)
     return nlp
 
+def _train_epoch(nlp, gold_tuples, eg_seen, itn, dev_loc, micro_eval):
+    random.shuffle(gold_tuples)
+    loss = 0
+    nr_trimmed = 0
+    for _, sents in gold_tuples:
+        for annot_tuples, _ in sents:
+            tokens = nlp.tokenizer.tokens_from_list(annot_tuples[1])
+            nlp.tagger.tag_from_strings(tokens, annot_tuples[2])
+            gold = GoldParse(tokens, annot_tuples)
+            loss += nlp.parser.train(tokens, gold, itn=itn)
+            eg_seen += 1
+            if eg_seen % 1000 == 0:
+                if eg_seen % 20000 == 0:
+                    dev_uas = score_file(nlp, dev_loc).uas
+                else:
+                    dev_uas = 0.0
+                train_uas = score_sents(nlp, micro_eval).uas
+                size = nlp.parser.model.mem.size
+                nr_upd = nlp.parser.model.time
+                print('%d,%d:\t%d\t%.3f\t%.3f\t%.3f\t%d' % (itn, nr_upd, int(loss), nr_trimmed,
+                                                             train_uas, dev_uas, size))
+                loss = 0
+    return eg_seen
+
 
 @plac.annotations(
     train_loc=("Location of CoNLL 09 formatted training file"),
@@ -206,11 +223,13 @@ def main(train_loc, dev_loc, model_dir, n_iter=15, neural=False, batch_norm=Fals
                 batch_norm=batch_norm,
                 learn_rate=learn_rate,
                 update_step=update_step)
-    scorer = Scorer()
+
-    with io.open(dev_loc, 'r', encoding='utf8') as file_:
+    scorer = score_file(nlp, dev_loc)
-        for _, sents in read_conll(file_):
+    #scorer = Scorer()
-            for annot_tuples, _ in sents:
+    #with io.open(dev_loc, 'r', encoding='utf8') as file_:
-                score_model(scorer, nlp, None, annot_tuples)
+    #    for _, sents in read_conll(file_):
+    #        for annot_tuples, _ in sents:
+    #            score_model(scorer, nlp, None, annot_tuples)
     print('TOK', scorer.token_acc)
     print('POS', scorer.tags_acc)
     print('UAS', scorer.uas)

setup.py

@@ -50,6 +50,7 @@ MOD_NAMES = [
     'spacy.syntax.stateclass',
     'spacy.syntax._state',
     'spacy.tokenizer',
+    'spacy.syntax._neural',
     'spacy.syntax.parser',
     'spacy.syntax.beam_parser',
     'spacy.syntax.nonproj',
@@ -174,7 +175,8 @@ def setup_package():
             mod_path = mod_name.replace('.', '/') + '.cpp'
             ext_modules.append(
                 Extension(mod_name, [mod_path],
-                    language='c++', include_dirs=include_dirs))
+                    language='c++', include_dirs=include_dirs,
+                    libraries=['/Users/matt/blis/lib/blis']))
 
         if not is_source_release(root):
             generate_cython(root, 'spacy')

spacy/syntax/beam_parser.pyx

@@ -114,15 +114,13 @@ cdef class BeamParser(Parser):
         else:
             violn.check_crf(pred, gold)
         if isinstance(self.model, ParserNeuralNet):
-            min_grad = 0.01 ** (itn+1)
+            min_grad = 0.1 ** (itn+1)
             for grad, hist in zip(violn.p_probs, violn.p_hist):
-                assert not math.isnan(grad)
+                assert not math.isnan(grad) and not math.isinf(grad)
-                assert not math.isinf(grad)
                 if abs(grad) >= min_grad:
                     self._update_dense(tokens, hist, grad)
             for grad, hist in zip(violn.g_probs, violn.g_hist):
-                assert not math.isnan(grad)
+                assert not math.isnan(grad) and not math.isinf(grad)
-                assert not math.isinf(grad)
                 if abs(grad) >= min_grad:
                     self._update_dense(tokens, hist, grad)
         else:

spacy/syntax/parser.pxd

@@ -1,35 +1,11 @@
-from thinc.linear.avgtron cimport AveragedPerceptron
-from thinc.neural.nn cimport NeuralNet
-from thinc.linear.features cimport ConjunctionExtracter
-from thinc.base cimport Model
-from thinc.extra.eg cimport Example
-from thinc.typedefs cimport weight_t
-from thinc.structs cimport FeatureC
-
-from .stateclass cimport StateClass
 from .arc_eager cimport TransitionSystem
-from ..tokens.doc cimport Doc
-from ..structs cimport TokenC
-from thinc.structs cimport NeuralNetC, ExampleC
 from ._state cimport StateC
+from ..structs cimport TokenC
+
+from thinc.base cimport Model
+from thinc.linalg cimport *
 
 
-cdef class ParserNeuralNet(NeuralNet):
-    cdef ConjunctionExtracter extracter
-    cdef void set_featuresC(self, ExampleC* eg, const void* _state) nogil
-
-
-cdef class ParserPerceptron(AveragedPerceptron):
-    cdef void set_featuresC(self, ExampleC* eg, const void* _state) nogil
-
-
-cdef class ParserNeuralNetEnsemble(ParserNeuralNet):
-    cdef object _models
-    cdef NeuralNetC** _models_c
-    cdef int** _masks
-    cdef int _nr_model
-
-    
 cdef class Parser:
     cdef readonly Model model
     cdef readonly TransitionSystem moves

spacy/syntax/parser.pyx

@@ -24,10 +24,13 @@ import random
 
 from cymem.cymem cimport Pool, Address
 from murmurhash.mrmr cimport hash64
+
 from thinc.typedefs cimport weight_t, class_t, feat_t, atom_t, hash_t, idx_t
 from thinc.linear.avgtron cimport AveragedPerceptron
 from thinc.linalg cimport VecVec
 from thinc.structs cimport NeuralNetC, SparseArrayC, ExampleC
+from thinc.extra.eg cimport Example
+
 from preshed.maps cimport MapStruct
 from preshed.maps cimport map_get
 from thinc.structs cimport FeatureC
@@ -50,6 +53,7 @@ from ._parse_features cimport fill_context
 from ._parse_features cimport *
 from .stateclass cimport StateClass
 from ._state cimport StateC
+from ._neural cimport ParserNeuralNet, ParserPerceptron
 
 
 DEBUG = False
@@ -77,171 +81,6 @@ def ParserFactory(transition_system):
     return lambda strings, dir_: Parser(strings, dir_, transition_system)
 
 
-cdef class ParserPerceptron(AveragedPerceptron):
-    @property
-    def widths(self):
-        return (self.extracter.nr_templ,)
-
-    def update(self, Example eg):
-        '''Does regression on negative cost. Sort of cute?'''
-        self.time += 1
-        cdef weight_t loss = 0.0
-        best = eg.best
-        for clas in range(eg.c.nr_class):
-            if not eg.c.is_valid[clas]:
-                continue
-            if eg.c.scores[clas] < eg.c.scores[best]:
-                continue
-            loss += (-eg.c.costs[clas] - eg.c.scores[clas]) ** 2
-            d_loss = 2 * (-eg.c.costs[clas] - eg.c.scores[clas])
-            step = d_loss * 0.001
-            for feat in eg.c.features[:eg.c.nr_feat]:
-                self.update_weight(feat.key, clas, feat.value * step)
-        return int(loss)
-
-    cdef void set_featuresC(self, ExampleC* eg, const void* _state) nogil: 
-        state = <const StateC*>_state
-        fill_context(eg.atoms, state)
-        eg.nr_feat = self.extracter.set_features(eg.features, eg.atoms)
-
-
-cdef class ParserNeuralNet(NeuralNet):
-    def __init__(self, shape, **kwargs):
-        vector_widths = [4] * 76
-        slots =  [0, 1, 2, 3] # S0
-        slots += [4, 5, 6, 7] # S1
-        slots += [8, 9, 10, 11] # S2
-        slots += [12, 13, 14, 15] # S3+
-        slots += [16, 17, 18, 19] # B0
-        slots += [20, 21, 22, 23] # B1
-        slots += [24, 25, 26, 27] # B2
-        slots += [28, 29, 30, 31] # B3+
-        slots += [32, 33, 34, 35] * 2 # S0l, S0r
-        slots += [36, 37, 38, 39] * 2 # B0l, B0r
-        slots += [40, 41, 42, 43] * 2 # S1l, S1r
-        slots += [44, 45, 46, 47] * 2 # S2l, S2r
-        slots += [48, 49, 50, 51, 52, 53, 54, 55]
-        slots += [53, 54, 55, 56]
-        input_length = sum(vector_widths[slot] for slot in slots)
-        widths = [input_length] + shape
-        NeuralNet.__init__(self, widths, embed=(vector_widths, slots), **kwargs)
-
-    @property
-    def nr_feat(self):
-        return 2000
-
-    cdef void set_featuresC(self, ExampleC* eg, const void* _state) nogil: 
-        memset(eg.features, 0, 2000 * sizeof(FeatureC))
-        state = <const StateC*>_state
-        fill_context(eg.atoms, state)
-        feats = eg.features
-
-        feats = _add_token(feats, 0, state.S_(0), 1.0)
-        feats = _add_token(feats, 4, state.S_(1), 1.0)
-        feats = _add_token(feats, 8, state.S_(2), 1.0)
-        # Rest of the stack, with exponential decay
-        for i in range(3, state.stack_depth()):
-            feats = _add_token(feats, 12, state.S_(i), 1.0 * 0.5**(i-2))
-        feats = _add_token(feats, 16, state.B_(0), 1.0)
-        feats = _add_token(feats, 20, state.B_(1), 1.0)
-        feats = _add_token(feats, 24, state.B_(2), 1.0)
-        # Rest of the buffer, with exponential decay
-        for i in range(3, min(8, state.buffer_length())):
-            feats = _add_token(feats, 28, state.B_(i), 1.0 * 0.5**(i-2))
-        feats = _add_subtree(feats, 32, state, state.S(0))
-        feats = _add_subtree(feats, 40, state, state.B(0))
-        feats = _add_subtree(feats, 48, state, state.S(1))
-        feats = _add_subtree(feats, 56, state, state.S(2))
-        feats = _add_pos_bigram(feats, 64, state.S_(0), state.B_(0))
-        feats = _add_pos_bigram(feats, 65, state.S_(1), state.S_(0))
-        feats = _add_pos_bigram(feats, 66, state.S_(1), state.B_(0))
-        feats = _add_pos_bigram(feats, 67, state.S_(0), state.B_(1))
-        feats = _add_pos_bigram(feats, 68, state.S_(0), state.R_(state.S(0), 1))
-        feats = _add_pos_bigram(feats, 69, state.S_(0), state.R_(state.S(0), 2))
-        feats = _add_pos_bigram(feats, 70, state.S_(0), state.L_(state.S(0), 1))
-        feats = _add_pos_bigram(feats, 71, state.S_(0), state.L_(state.S(0), 2))
-        feats = _add_pos_trigram(feats, 72, state.S_(1), state.S_(0), state.B_(0))
-        feats = _add_pos_trigram(feats, 73, state.S_(0), state.B_(0), state.B_(1))
-        feats = _add_pos_trigram(feats, 74, state.S_(0), state.R_(state.S(0), 1),
-                                 state.R_(state.S(0), 2))
-        feats = _add_pos_trigram(feats, 75, state.S_(0), state.L_(state.S(0), 1),
-                                 state.L_(state.S(0), 2))
-        eg.nr_feat = feats - eg.features
-
-    cdef void _set_delta_lossC(self, weight_t* delta_loss,
-            const weight_t* Zs, const weight_t* scores) nogil:
-        for i in range(self.c.widths[self.c.nr_layer-1]):
-            delta_loss[i] = Zs[i]
-
-    cdef void _softmaxC(self, weight_t* out) nogil:
-        pass
-
-
-cdef inline FeatureC* _add_token(FeatureC* feats,
-        int slot, const TokenC* token, weight_t value) nogil:
-    # Word
-    feats.i = slot
-    feats.key = token.lex.norm
-    feats.value = value
-    feats += 1
-    # POS tag
-    feats.i = slot+1
-    feats.key = token.tag
-    feats.value = value
-    feats += 1
-    # Dependency label 
-    feats.i = slot+2
-    feats.key = token.dep
-    feats.value = value
-    feats += 1
-    # Word, label, tag
-    feats.i = slot+3
-    cdef uint64_t key[3]
-    key[0] = token.lex.cluster
-    key[1] = token.tag
-    key[2] = token.dep
-    feats.key = hash64(key, sizeof(key), 0)
-    feats.value = value
-    feats += 1
-    return feats
-
-
-cdef inline FeatureC* _add_subtree(FeatureC* feats, int slot, const StateC* state, int t) nogil:
-    value = 1.0
-    for i in range(state.n_R(t)):
-        feats = _add_token(feats, slot, state.R_(t, i+1), value)
-        value *= 0.5
-    slot += 4
-    value = 1.0
-    for i in range(state.n_L(t)):
-        feats = _add_token(feats, slot, state.L_(t, i+1), value)
-        value *= 0.5
-    return feats
-
-
-cdef inline FeatureC* _add_pos_bigram(FeatureC* feat, int slot,
-        const TokenC* t1, const TokenC* t2) nogil:
-    cdef uint64_t[2] key
-    key[0] = t1.tag
-    key[1] = t2.tag
-    feat.i = slot
-    feat.key = hash64(key, sizeof(key), slot)
-    feat.value = 1.0
-    return feat+1
- 
-
-cdef inline FeatureC* _add_pos_trigram(FeatureC* feat, int slot,
-        const TokenC* t1, const TokenC* t2, const TokenC* t3) nogil:
-    cdef uint64_t[3] key
-    key[0] = t1.tag
-    key[1] = t2.tag
-    key[2] = t3.tag
-    feat.i = slot
-    feat.key = hash64(key, sizeof(key), slot)
-    feat.value = 1.0
-    return feat+1
- 
-
 cdef class Parser:
     def __init__(self, StringStore strings, transition_system, model):
         self.moves = transition_system