Commit Graph

158 Commits

Author SHA1 Message Date
Ines Montani
52728d8fa3 Merge branch 'develop' into master-tmp 2020-06-20 15:52:00 +02:00
Adriane Boyd
c482f20778
Fix and add warnings related to spacy-lookups-data (#5588)
* Fix warning message for lemmatization tables

* Add a warning when the `lexeme_norm` table is empty. (Given the
relatively lang-specific loading for `Lookups`, it seemed like too much
overhead to dynamically extract the list of languages, so for now it's
hard-coded.)
2020-06-15 14:56:04 +02:00
Sofie Van Landeghem
c0f4a1e43b
train is from-config by default (#5575)
* verbose and tag_map options

* adding init_tok2vec option and only changing the tok2vec that is specified

* adding omit_extra_lookups and verifying textcat config

* wip

* pretrain bugfix

* add replace and resume options

* train_textcat fix

* raw text functionality

* improve UX when KeyError or when input data can't be parsed

* avoid unnecessary access to goldparse in TextCat pipe

* save performance information in nlp.meta

* add noise_level to config

* move nn_parser's defaults to config file

* multitask in config - doesn't work yet

* scorer offering both F and AUC options, need to be specified in config

* add textcat verification code from old train script

* small fixes to config files

* clean up

* set default config for ner/parser to allow create_pipe to work as before

* two more test fixes

* small fixes

* cleanup

* fix NER pickling + additional unit test

* create_pipe as before
2020-06-12 02:02:07 +02:00
Ines Montani
d93cbeb14f
Add warning for loose version constraints (#5536)
* Add warning for loose version constraints

* Update wording [ci skip]

* Tweak error message

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-06-05 12:42:15 +02:00
Matthew Honnibal
8411d4f4e6
Merge pull request #5543 from svlandeg/feature/pretrain-config
pretrain from config
2020-06-04 19:07:12 +02:00
svlandeg
ffe0451d09 pretrain from config 2020-06-03 14:45:00 +02:00
Ines Montani
810fce3bb1 Merge branch 'develop' into master-tmp 2020-06-03 14:36:59 +02:00
svlandeg
03c58b488c prevent infinite loop, custom warning 2020-06-03 10:00:21 +02:00
Adriane Boyd
bbc1836581 Add rudimentary version checks on model load 2020-06-02 17:33:48 +02:00
Ines Montani
dc186afdc5 Add warning 2020-05-30 15:34:54 +02:00
svlandeg
291483157d prevent loading a pretrained Tok2Vec layer AND pretrained components 2020-05-29 17:38:33 +02:00
Ines Montani
5d3806e059 unicode -> str consistency 2020-05-24 17:20:58 +02:00
Adriane Boyd
71fe61fdcd Disallow merging 0-length spans 2020-05-22 10:14:34 +02:00
Ines Montani
891fa59009 Use backwards-compatible super() 2020-05-21 20:52:48 +02:00
Ines Montani
24f72c669c Merge branch 'develop' into master-tmp 2020-05-21 18:39:06 +02:00
Ines Montani
d8f3190c0a Tidy up and auto-format 2020-05-21 14:14:01 +02:00
Sofie Van Landeghem
7f5715a081
Various fixes to NEL functionality, Example class etc (#5460)
* setting KB in the EL constructor, similar to how the model is passed on

* removing wikipedia example files - moved to projects

* throw an error when nlp.update is called with 2 positional arguments

* rewriting the config logic in create pipe to accomodate for other objects (e.g. KB) in the config

* update config files with new parameters

* avoid training pipeline components that don't have a model (like sentencizer)

* various small fixes + UX improvements

* small fixes

* set thinc to 8.0.0a9 everywhere

* remove outdated comment
2020-05-20 11:41:12 +02:00
adrianeboyd
40e65d6f63
Fix most_similar for vectors with unused rows (#5348)
* Fix most_similar for vectors with unused rows

Address issues related to the unused rows in the vector table and
`most_similar`:

* Update `most_similar()` to search only through rows that are in use
according to `key2row`.

* Raise an error when `most_similar(n=n)` is larger than the number of
vectors in the table.

* Set and restore `_unset` correctly when vectors are added or
deserialized so that new vectors are added in the correct row.

* Set data and keys to the same length in `Vocab.prune_vectors()` to
avoid spurious entries in `key2row`.

* Fix regression test using `most_similar`

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-19 16:41:26 +02:00
adrianeboyd
70da1fd2d6
Add warning for misaligned character offset spans (#5007)
* Add warning for misaligned character offset spans

* Resolve conflict

* Filter warnings in example scripts

Filter warnings in example scripts to show warnings once, in particular
warnings about misaligned entities.

Co-authored-by: Ines Montani <ines@ines.io>
2020-05-19 16:01:18 +02:00
Sofie Van Landeghem
0d94737857
Feature toggle_pipes (#5378)
* make disable_pipes deprecated in favour of the new toggle_pipes

* rewrite disable_pipes statements

* update documentation

* remove bin/wiki_entity_linking folder

* one more fix

* remove deprecated link to documentation

* few more doc fixes

* add note about name change to the docs

* restore original disable_pipes

* small fixes

* fix typo

* fix error number to W096

* rename to select_pipes

* also make changes to the documentation

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-18 22:27:10 +02:00
svlandeg
e0fda2bd81 throw warning when model_cfg is None 2020-05-15 11:02:10 +02:00
Ilia Ivanov
712d9d4820 fixup! Fix ErrorsWithCodes().__class__ return value 2020-05-14 15:45:58 +02:00
Ilia Ivanov
a987e9e45d Fix ErrorsWithCodes().__class__ return value 2020-05-14 14:14:15 +02:00
adrianeboyd
113e7981d0
Check that row is within bounds when adding vector (#5430)
Check that row is within bounds for the vector data array when adding a
vector.

Don't add vectors with rank OOV_RANK in `init-model` (change is due to
shift from OOV as 0 to OOV as OOV_RANK).
2020-05-13 22:08:28 +02:00
Ines Montani
efec28ce70
Merge pull request #5367 from adrianeboyd/feature/simplify-warnings-v2 2020-04-29 12:55:37 +02:00
adrianeboyd
a6e521cd79
Add is_sent_end token property (#5375)
Reconstruction of the original PR #4697 by @MiniLau.

Removes unused `SENT_END` symbol and `IS_SENT_END` from `Matcher` schema
because the Matcher is only going to be able to support `IS_SENT_START`.
2020-04-29 12:53:16 +02:00
Adriane Boyd
bc39f97e11 Simplify warnings 2020-04-28 13:37:37 +02:00
adrianeboyd
84e06f9fb7
Improve GoldParse NER alignment (#5335)
Improve GoldParse NER alignment by including all cases where the start
and end of the NER span can be aligned, regardless of internal
tokenization differences.

To do this, convert BILUO tags to character offsets, check start/end
alignment with `doc.char_span()`, and assign the BILUO tags for the
aligned spans. Alignment for `O/-` tags is handled through the
one-to-one and multi alignments.
2020-04-23 16:58:23 +02:00
Paolo Arduin
1ca32d8f9c
Matcher support for Span as well as Doc (#5113)
* Matcher support for Span, as well as Doc #5056

* Removes an import unused

* Signed contributors agreement

* Code optimization and better test

* Add error message for bad Matcher call argument

* Fix merging
2020-04-15 13:51:33 +02:00
adrianeboyd
3d2c308906
Add Doc init from list of words and text (#5251)
* Add Doc init from list of words and text

Add an option to initialize a `Doc` from a text and list of words where
the words may or may not include all whitespace tokens. If the text and
words are mismatched, raise an error.

* Fix error code

* Remove all whitespace before aligning words/text

* Move words/text init to util function

* Update error message

* Rename to get_words_and_spaces

* Fix formatting
2020-04-14 19:15:52 +02:00
adrianeboyd
d107afcffb
Raise error for inplace resize with new vector dim (#5228)
Raise an error if there is an attempt to resize the vectors in place with
a different vector dimension.
2020-04-02 10:43:13 +02:00
adrianeboyd
963bd890c1
Modify Vector.resize to work with cupy and improve resizing (#5216)
* Modify Vector.resize to work with cupy

Modify `Vectors.resize` to work with cupy. Modify behavior when resizing
to a different vector dimension so that individual vectors are truncated
or extended with zeros instead of having the original values filled into
the new shape without regard for the original axes.

* Update spacy/tests/vocab_vectors/test_vectors.py

Co-Authored-By: Matthew Honnibal <honnibal+gh@gmail.com>

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-03-29 13:51:20 +02:00
Ines Montani
46568f40a7 Merge branch 'master' into tmp/sync 2020-03-26 13:38:14 +01:00
Ines Montani
828acffc12 Tidy up and auto-format 2020-03-25 12:28:12 +01:00
adrianeboyd
9be90dbca3
Improve token head verification (#5079)
* Improve token head verification

Improve the verification for valid token heads when heads are set:

* in `Token.head`: heads come from the same document
* in `Doc.from_array()`: head indices are within the bounds of the
document

* Improve error message
2020-03-03 21:44:51 +01:00
Sofie Van Landeghem
c6b12ab02a
Bugfix/get doc (#5049)
* new (broken) unit test

* fixing get_doc method
2020-03-02 11:49:28 +01:00
Ines Montani
7efaa76168 Update errors.py 2020-02-28 12:23:31 +01:00
Ines Montani
37691e6d5d Simplify warnings 2020-02-28 12:20:23 +01:00
Sofie Van Landeghem
06f0a8daa0
Default settings to configurations (#4995)
* fix grad_clip naming

* cleaning up pretrained_vectors out of cfg

* further refactoring Model init's

* move Model building out of pipes

* further refactor to require a model config when creating a pipe

* small fixes

* making cfg in nn_parser more consistent

* fixing nr_class for parser

* fixing nn_parser's nO

* fix printing of loss

* architectures in own file per type, consistent naming

* convenience methods default_tagger_config and default_tok2vec_config

* let create_pipe access default config if available for that component

* default_parser_config

* move defaults to separate folder

* allow reading nlp from package or dir with argument 'name'

* architecture spacy.VocabVectors.v1 to read static vectors from file

* cleanup

* default configs for nel, textcat, morphologizer, tensorizer

* fix imports

* fixing unit tests

* fixes and clean up

* fixing defaults, nO, fix unit tests

* restore parser IO

* fix IO

* 'fix' serialization test

* add *.cfg to manifest

* fix example configs with additional arguments

* replace Morpohologizer with Tagger

* add IO bit when testing overfitting of tagger (currently failing)

* fix IO - don't initialize when reading from disk

* expand overfitting tests to also check IO goes OK

* remove dropout from HashEmbed to fix Tagger performance

* add defaults for sentrec

* update thinc

* always pass a Model instance to a Pipe

* fix piped_added statement

* remove obsolete W029

* remove obsolete errors

* restore byte checking tests (work again)

* clean up test

* further test cleanup

* convert from config to Model in create_pipe

* bring back error when component is not initialized

* cleanup

* remove calls for nlp2.begin_training

* use thinc.api in imports

* allow setting charembed's nM and nC

* fix for hardcoded nM/nC + unit test

* formatting fixes

* trigger build
2020-02-27 18:42:27 +01:00
Ines Montani
a3335d36b8 Merge branch 'develop' into refactor/remove-symlinks 2020-02-18 17:22:20 +01:00
Ines Montani
09cbeaef27 Remove symlinks, data dir and related stuff 2020-02-18 17:20:17 +01:00
Ines Montani
1278161f47 Tidy up and fix issues 2020-02-18 15:17:03 +01:00
Ines Montani
de11ea753a Merge branch 'master' into develop 2020-02-18 14:47:23 +01:00
adrianeboyd
adc9745718 Modify morphology to support arbitrary features (#4932)
* Restructure tag maps for MorphAnalysis changes

Prepare tag maps for upcoming MorphAnalysis changes that allow
arbritrary features.

* Use default tag map rather than duplicating for ca / uk / vi

* Import tag map into defaults for ga

* Modify tag maps so all morphological fields and features are strings
  * Move features from `"Other"` to the top level
  * Rewrite tuples as strings separated by `","`

* Rewrite morph symbols for fr lemmatizer as strings

* Export MorphAnalysis under spacy.tokens

* Modify morphology to support arbitrary features

Modify `Morphology` and `MorphAnalysis` so that arbitrary features are
supported.

* Modify `MorphAnalysisC` so that it can support arbitrary features and
multiple values per field. `MorphAnalysisC` is redesigned to contain:
  * key: hash of UD FEATS string of morphological features
  * array of `MorphFeatureC` structs that each contain a hash of `Field`
and `Field=Value` for a given morphological feature, which makes it
possible to:
    * find features by field
    * represent multiple values for a given field

* `get_field()` is renamed to `get_by_field()` and is no longer `nogil`.
Instead a new helper function `get_n_by_field()` is `nogil` and returns
`n` features by field.

* `MorphAnalysis.get()` returns all possible values for a field as a
list of individual features such as `["Tense=Pres", "Tense=Past"]`.

* `MorphAnalysis`'s `str()` and `repr()` are the UD FEATS string.

* `Morphology.feats_to_dict()` converts a UD FEATS string to a dict
where:
  * Each field has one entry in the dict
  * Multiple values remain separated by a separator in the value string

* `Token.morph_` returns the UD FEATS string and you can set
`Token.morph_` with a UD FEATS string or with a tag map dict.

* Modify get_by_field to use np.ndarray

Modify `get_by_field()` to use np.ndarray. Remove `max_results` from
`get_n_by_field()` and always iterate over all the fields.

* Rewrite without MorphFeatureC

* Add shortcut for existing feats strings as keys

Add shortcut for existing feats strings as keys in `Morphology.add()`.

* Check for '_' as empty analysis when adding morphs

* Extend helper converters in Morphology

Add and extend helper converters that convert and normalize between:

* UD FEATS strings (`"Case=dat,gen|Number=sing"`)
* per-field dict of feats (`{"Case": "dat,gen", "Number": "sing"}`)
* list of individual features (`["Case=dat", "Case=gen",
"Number=sing"]`)

All converters sort fields and values where applicable.
2020-01-23 22:01:54 +01:00
Sofie Van Landeghem
6e9b61b49d add warning in debug_data for punctuation in entities (#4853) 2020-01-06 14:59:28 +01:00
Sofie Van Landeghem
581eeed98b Warning goldparse (#4851)
* label in span not writable anymore

* Revert "label in span not writable anymore"

This reverts commit ab442338c8.

* provide more friendly error msg for parsing file
2020-01-01 13:16:48 +01:00
Ivan Echevarria
ef13e0c038 Add n_process to Language.pipe documentation (#4842) [ci skip]
* Add n_process to documentation

* Auto-format and add default [ci skip]

Co-authored-by: Ines Montani <ines@ines.io>
2019-12-29 14:23:33 +01:00
Ines Montani
33a2682d60
Add better schemas and validation using Pydantic (#4831)
* Remove unicode declarations

* Remove Python 3.5 and 2.7 from CI

* Don't require pathlib

* Replace compat helpers

* Remove OrderedDict

* Use f-strings

* Set Cython compiler language level

* Fix typo

* Re-add OrderedDict for Table

* Update setup.cfg

* Revert CONTRIBUTING.md

* Add better schemas and validation using Pydantic

* Revert lookups.md

* Remove unused import

* Update spacy/schemas.py

Co-Authored-By: Sebastián Ramírez <tiangolo@gmail.com>

* Various small fixes

* Fix docstring

Co-authored-by: Sebastián Ramírez <tiangolo@gmail.com>
2019-12-25 12:39:49 +01:00
Ines Montani
db55577c45
Drop Python 2.7 and 3.5 (#4828)
* Remove unicode declarations

* Remove Python 3.5 and 2.7 from CI

* Don't require pathlib

* Replace compat helpers

* Remove OrderedDict

* Use f-strings

* Set Cython compiler language level

* Fix typo

* Re-add OrderedDict for Table

* Update setup.cfg

* Revert CONTRIBUTING.md

* Revert lookups.md

* Revert top-level.md

* Small adjustments and docs [ci skip]
2019-12-22 01:53:56 +01:00
Ines Montani
de33b6d566 Merge branch 'master' into develop 2019-12-21 21:15:46 +01:00