* Add convert CLI option to merge CoNLL-U subtokens
Add `-T` option to convert CLI that merges CoNLL-U subtokens into one
token in the converted data. Each CoNLL-U sentence is read into a `Doc`
and the `Retokenizer` is used to merge subtokens with features as
follows:
* `orth` is the merged token orth (should correspond to raw text and `#
text`)
* `tag` is all subtoken tags concatenated with `_`, e.g. `ADP_DET`
* `pos` is the POS of the syntactic root of the span (as determined by
the Retokenizer)
* `morph` is all morphological features merged
* `lemma` is all subtoken lemmas concatenated with ` `, e.g. `de o`
* with `-m` all morphological features are combined with the tag using
the separator `__`, e.g.
`ADP_DET__Definite=Def|Gender=Masc|Number=Sing|PronType=Art`
* `dep` is the dependency relation for the syntactic root of the span
(as determined by the Retokenizer)
Concatenated tags will be mapped to the UD POS of the syntactic root
(e.g., `ADP`) and the morphological features will be the combined
features.
In many cases, the original UD subtokens can be reconstructed from the
available features given a language-specific lookup table, e.g.,
Portuguese `do / ADP_DET /
Definite=Def|Gender=Masc|Number=Sing|PronType=Art` is `de / ADP`, `o /
DET / Definite=Def|Gender=Masc|Number=Sing|PronType=Art` or lookup rules
for forms containing open class words like Spanish `hablarlo / VERB_PRON
/
Case=Acc|Gender=Masc|Number=Sing|Person=3|PrepCase=Npr|PronType=Prs|VerbForm=Inf`.
* Clean up imports
* Add load_from_config function
* Add train_from_config script
* Merge configs and expose via spacy.config
* Fix script
* Suggest create_evaluation_callback
* Hard-code for NER
* Fix errors
* Register command
* Add TODO
* Update train-from-config todos
* Fix imports
* Allow delayed setting of parser model nr_class
* Get train-from-config working
* Tidy up and fix scores and printing
* Hide traceback if cancelled
* Fix weighted score formatting
* Fix score formatting
* Make output_path optional
* Add Tok2Vec component
* Tidy up and add tok2vec_tensors
* Add option to copy docs in nlp.update
* Copy docs in nlp.update
* Adjust nlp.update() for set_annotations
* Don't shuffle pipes in nlp.update, decruft
* Support set_annotations arg in component update
* Support set_annotations in parser update
* Add get_gradients method
* Add get_gradients to parser
* Update errors.py
* Fix problems caused by merge
* Add _link_components method in nlp
* Add concept of 'listeners' and ControlledModel
* Support optional attributes arg in ControlledModel
* Try having tok2vec component in pipeline
* Fix tok2vec component
* Fix config
* Fix tok2vec
* Update for Example
* Update for Example
* Update config
* Add eg2doc util
* Update and add schemas/types
* Update schemas
* Fix nlp.update
* Fix tagger
* Remove hacks from train-from-config
* Remove hard-coded config str
* Calculate loss in tok2vec component
* Tidy up and use function signatures instead of models
* Support union types for registry models
* Minor cleaning in Language.update
* Make ControlledModel specifically Tok2VecListener
* Fix train_from_config
* Fix tok2vec
* Tidy up
* Add function for bilstm tok2vec
* Fix type
* Fix syntax
* Fix pytorch optimizer
* Add example configs
* Update for thinc describe changes
* Update for Thinc changes
* Update for dropout/sgd changes
* Update for dropout/sgd changes
* Unhack gradient update
* Work on refactoring _ml
* Remove _ml.py module
* WIP upgrade cli scripts for thinc
* Move some _ml stuff to util
* Import link_vectors from util
* Update train_from_config
* Import from util
* Import from util
* Temporarily add ml.component_models module
* Move ml methods
* Move typedefs
* Update load vectors
* Update gitignore
* Move imports
* Add PrecomputableAffine
* Fix imports
* Fix imports
* Fix imports
* Fix missing imports
* Update CLI scripts
* Update spacy.language
* Add stubs for building the models
* Update model definition
* Update create_default_optimizer
* Fix import
* Fix comment
* Update imports in tests
* Update imports in spacy.cli
* Fix import
* fix obsolete thinc imports
* update srsly pin
* from thinc to ml_datasets for example data such as imdb
* update ml_datasets pin
* using STATE.vectors
* small fix
* fix Sentencizer.pipe
* black formatting
* rename Affine to Linear as in thinc
* set validate explicitely to True
* rename with_square_sequences to with_list2padded
* rename with_flatten to with_list2array
* chaining layernorm
* small fixes
* revert Optimizer import
* build_nel_encoder with new thinc style
* fixes using model's get and set methods
* Tok2Vec in component models, various fixes
* fix up legacy tok2vec code
* add model initialize calls
* add in build_tagger_model
* small fixes
* setting model dims
* fixes for ParserModel
* various small fixes
* initialize thinc Models
* fixes
* consistent naming of window_size
* fixes, removing set_dropout
* work around Iterable issue
* remove legacy tok2vec
* util fix
* fix forward function of tok2vec listener
* more fixes
* trying to fix PrecomputableAffine (not succesful yet)
* alloc instead of allocate
* add morphologizer
* rename residual
* rename fixes
* Fix predict function
* Update parser and parser model
* fixing few more tests
* Fix precomputable affine
* Update component model
* Update parser model
* Move backprop padding to own function, for test
* Update test
* Fix p. affine
* Update NEL
* build_bow_text_classifier and extract_ngrams
* Fix parser init
* Fix test add label
* add build_simple_cnn_text_classifier
* Fix parser init
* Set gpu off by default in example
* Fix tok2vec listener
* Fix parser model
* Small fixes
* small fix for PyTorchLSTM parameters
* revert my_compounding hack (iterable fixed now)
* fix biLSTM
* Fix uniqued
* PyTorchRNNWrapper fix
* small fixes
* use helper function to calculate cosine loss
* small fixes for build_simple_cnn_text_classifier
* putting dropout default at 0.0 to ensure the layer gets built
* using thinc util's set_dropout_rate
* moving layer normalization inside of maxout definition to optimize dropout
* temp debugging in NEL
* fixed NEL model by using init defaults !
* fixing after set_dropout_rate refactor
* proper fix
* fix test_update_doc after refactoring optimizers in thinc
* Add CharacterEmbed layer
* Construct tagger Model
* Add missing import
* Remove unused stuff
* Work on textcat
* fix test (again :)) after optimizer refactor
* fixes to allow reading Tagger from_disk without overwriting dimensions
* don't build the tok2vec prematuraly
* fix CharachterEmbed init
* CharacterEmbed fixes
* Fix CharacterEmbed architecture
* fix imports
* renames from latest thinc update
* one more rename
* add initialize calls where appropriate
* fix parser initialization
* Update Thinc version
* Fix errors, auto-format and tidy up imports
* Fix validation
* fix if bias is cupy array
* revert for now
* ensure it's a numpy array before running bp in ParserStepModel
* no reason to call require_gpu twice
* use CupyOps.to_numpy instead of cupy directly
* fix initialize of ParserModel
* remove unnecessary import
* fixes for CosineDistance
* fix device renaming
* use refactored loss functions (Thinc PR 251)
* overfitting test for tagger
* experimental settings for the tagger: avoid zero-init and subword normalization
* clean up tagger overfitting test
* use previous default value for nP
* remove toy config
* bringing layernorm back (had a bug - fixed in thinc)
* revert setting nP explicitly
* remove setting default in constructor
* restore values as they used to be
* add overfitting test for NER
* add overfitting test for dep parser
* add overfitting test for textcat
* fixing init for linear (previously affine)
* larger eps window for textcat
* ensure doc is not None
* Require newer thinc
* Make float check vaguer
* Slop the textcat overfit test more
* Fix textcat test
* Fix exclusive classes for textcat
* fix after renaming of alloc methods
* fixing renames and mandatory arguments (staticvectors WIP)
* upgrade to thinc==8.0.0.dev3
* refer to vocab.vectors directly instead of its name
* rename alpha to learn_rate
* adding hashembed and staticvectors dropout
* upgrade to thinc 8.0.0.dev4
* add name back to avoid warning W020
* thinc dev4
* update srsly
* using thinc 8.0.0a0 !
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
Co-authored-by: Ines Montani <ines@ines.io>
* Restructure tag maps for MorphAnalysis changes
Prepare tag maps for upcoming MorphAnalysis changes that allow
arbritrary features.
* Use default tag map rather than duplicating for ca / uk / vi
* Import tag map into defaults for ga
* Modify tag maps so all morphological fields and features are strings
* Move features from `"Other"` to the top level
* Rewrite tuples as strings separated by `","`
* Rewrite morph symbols for fr lemmatizer as strings
* Export MorphAnalysis under spacy.tokens
* Modify morphology to support arbitrary features
Modify `Morphology` and `MorphAnalysis` so that arbitrary features are
supported.
* Modify `MorphAnalysisC` so that it can support arbitrary features and
multiple values per field. `MorphAnalysisC` is redesigned to contain:
* key: hash of UD FEATS string of morphological features
* array of `MorphFeatureC` structs that each contain a hash of `Field`
and `Field=Value` for a given morphological feature, which makes it
possible to:
* find features by field
* represent multiple values for a given field
* `get_field()` is renamed to `get_by_field()` and is no longer `nogil`.
Instead a new helper function `get_n_by_field()` is `nogil` and returns
`n` features by field.
* `MorphAnalysis.get()` returns all possible values for a field as a
list of individual features such as `["Tense=Pres", "Tense=Past"]`.
* `MorphAnalysis`'s `str()` and `repr()` are the UD FEATS string.
* `Morphology.feats_to_dict()` converts a UD FEATS string to a dict
where:
* Each field has one entry in the dict
* Multiple values remain separated by a separator in the value string
* `Token.morph_` returns the UD FEATS string and you can set
`Token.morph_` with a UD FEATS string or with a tag map dict.
* Modify get_by_field to use np.ndarray
Modify `get_by_field()` to use np.ndarray. Remove `max_results` from
`get_n_by_field()` and always iterate over all the fields.
* Rewrite without MorphFeatureC
* Add shortcut for existing feats strings as keys
Add shortcut for existing feats strings as keys in `Morphology.add()`.
* Check for '_' as empty analysis when adding morphs
* Extend helper converters in Morphology
Add and extend helper converters that convert and normalize between:
* UD FEATS strings (`"Case=dat,gen|Number=sing"`)
* per-field dict of feats (`{"Case": "dat,gen", "Number": "sing"}`)
* list of individual features (`["Case=dat", "Case=gen",
"Number=sing"]`)
All converters sort fields and values where applicable.
* Fix ent_ids and labels properties when id attribute used in patterns
* use set for labels
* sort end_ids for comparison in entity_ruler tests
* fixing entity_ruler ent_ids test
* add to set
Improve train CLI with a provided base model so that you can:
* add a new component
* extend an existing component
* replace an existing component
When the final model and best model are saved, reenable any disabled
components and merge the meta information to include the full pipeline
and accuracy information for all components in the base model plus the
newly added components if needed.
* Mark most Hungarian tokenizer test cases as slow
Mark most Hungarian tokenizer test cases as slow to reduce the runtime
of the test suite in ordinary usage:
* for normal tests: run default tests plus 10% of the detailed tests
* for slow tests: run all tests
* Rework to mark individual tests as slow
* move nlp processing for el pipe to batch training instead of preprocessing
* adding dev eval back in, and limit in articles instead of entities
* use pipe whenever possible
* few more small doc changes
* access dev data through generator
* tqdm description
* small fixes
* update documentation
* match domains longer than `hostname.domain.tld` like `www.foo.co.uk`
* expand allowed characters in domain names while only matching
lowercase TLDs so that "this.That" isn't matched as a URL and can be
split on the period as an infix (relevant for at least English, German,
and Tatar)
* expand serialization test for custom token attribute
* add failing test for issue 4849
* define ENT_ID as attr and use in doc serialization
* fix few typos
* label in span not writable anymore
* Revert "label in span not writable anymore"
This reverts commit ab442338c8.
* provide more friendly error msg for parsing file
