Commit Graph

14478 Commits

Author SHA1 Message Date
Adriane Boyd
9dfd3c9484 Use warnings.warn instead of logger.warning 2021-06-04 17:44:08 +02:00
Sofie Van Landeghem
f0277bdeab Show warning if entity_ruler runs without patterns (#7807)
* Show warning if entity_ruler runs without patterns

* Show warning if matcher runs without patterns

* fix wording

* unit test for warning once (WIP)

* warn W036 only once

* cleanup

* create filter_warning helper
2021-06-04 17:37:38 +02:00
Paul O'Leary McCann
d959603d51
Don't add duplicate patterns all the time in EntityRuler (fix #8216) (#8246)
* Don't add duplicate patterns (fix #8216)

* Refactor EntityRuler init

This simplifies the EntityRuler init code. This is helpful as prep for
allowing the EntityRuler to reset itself.

* Make EntityRuler.clear reset matchers

Includes a new test for this.

* Tidy PhraseMatcher instantiation

Since the attr can be None safely now, the guard if is no longer
required here.

Also renamed the `_validate` attr. Maybe it's not needed?

* Fix NER test

* Add test to make sure patterns aren't increasing

* Move test to regression tests
2021-06-03 09:05:26 +02:00
Paul O'Leary McCann
d54631f68b
Fix other open calls without context managers (#8245) 2021-05-31 19:04:29 +10:00
Paul O'Leary McCann
04239e94c7
Use a context manager when reading model (fix #7036) (#8244) 2021-05-31 17:36:17 +10:00
Adriane Boyd
cd6bd91c3a
Switch default train corpus max_length to 0 in quickstart (#8142)
The behavior of `spacy.Corpus.v1` is unexpected enough for `max_length
!= 0` that `0` is a better default for users creating a new config with
the quickstart.

If not, documents are skipped, sometimes the entire corpus is skipped,
and sometimes documents are (quite unexpectedly for your average user)
split into sentences.
2021-05-20 14:48:09 +02:00
Adriane Boyd
4e69fcaa50 Disable GPU CI tests (#8143) 2021-05-19 12:00:31 +02:00
Adriane Boyd
1d59fdbd39
Update Vietnamese tokenizer (#8099)
* Adapt tokenization methods from `pyvi` to preserve text encoding and
whitespace
* Add serialization support similar to Chinese and Japanese

Note: as for Chinese and Japanese, some settings are duplicated in
`config.cfg` and `tokenizer/cfg`.
2021-05-17 18:16:20 +10:00
Adriane Boyd
946a4284be Set spacy-legacy to >=3.0.5 (#7897)
Set `spacy-legacy` to `>=3.0.5` due to `spacy.StaticVectors.v1` init bug.
2021-04-26 18:25:39 +02:00
Adriane Boyd
ae855a4625
Clean up Morphology imports and definitions (#7441)
* Clean up Morphology imports and definitions

* Whitespace formatting
2021-04-26 16:54:23 +02:00
Adriane Boyd
ceee1ecf17
Replace cpdef variables with cdef (#7834) 2021-04-26 16:54:02 +02:00
Adriane Boyd
95c0833656
Add training option to set annotations on update (#7767)
* Add training option to set annotations on update

Add a `[training]` option called `set_annotations_on_update` to specify
a list of components for which the predicted annotations should be set
on `example.predicted` immediately after that component has been
updated. The predicted annotations can be accessed by later components
in the pipeline during the processing of the batch in the same `update`
call.

* Rename to annotates / annotating_components

* Add test for `annotating_components` when training from config

* Add documentation
2021-04-26 16:53:53 +02:00
Jacopo Farina
c105ed10fd
Remove torino from stop words (#7634)
Torino is the proper name of a city and the token has no other meaning
2021-04-26 16:53:43 +02:00
Sofie Van Landeghem
e0b29f8ef7
Fix scoring normalization (#7629)
* fix scoring normalization

* score weights by total sum instead of per component

* cleanup

* more cleanup
2021-04-26 16:53:38 +02:00
Sofie Van Landeghem
95e3cf576b
Optionally append lang for packaged model name (#7417)
* Add empty lines at the end of Python files

* Only prepend the lang code if it's not there already

* Update spacy/cli/package.py

* fix whitespace stripping
2021-04-26 16:53:21 +02:00
Adriane Boyd
df3444421a
Update spacy-legacy to >=3.0.4 (#7865) 2021-04-23 12:16:12 +02:00
Adriane Boyd
8a95475b3d
Set version to v3.0.6 (#7854) 2021-04-22 16:33:26 +02:00
Adriane Boyd
36ecba224e
Set up GPU CI testing (#7293)
* Set up CI for tests with GPU agent

* Update tests for enabled GPU

* Fix steps filename

* Add parallel build jobs as a setting

* Fix test requirements

* Fix install test requirements condition

* Fix pipeline models test

* Reset current ops in prefer/require testing

* Fix more tests

* Remove separate test_models test

* Fix regression 5551

* fix StaticVectors for GPU use

* fix vocab tests

* Fix regression test 5082

* Move azure steps to .github and reenable default pool jobs

* Consolidate/rename azure steps

Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2021-04-22 14:58:29 +02:00
Adriane Boyd
bdb485cc80
Add callback to copy vocab/tokenizer from model (#7750)
* Add callback to copy vocab/tokenizer from model

Add callback `spacy.copy_from_base_model.v1` to copy the tokenizer
settings and/or vocab (including vectors) from a base model.

* Move spacy.copy_from_base_model.v1 to spacy.training.callbacks

* Add documentation

* Modify to specify model as tokenizer and vocab params
2021-04-22 12:36:50 +02:00
Adriane Boyd
f68fc29130
Update sent_starts in Example.from_dict (#7847)
* Update sent_starts in Example.from_dict

Update `sent_starts` for `Example.from_dict` so that `Optional[bool]`
values have the same meaning as for `Token.is_sent_start`.

Use `Optional[bool]` as the type for sent start values in the docs.

* Use helper function for conversion to ternary ints
2021-04-22 11:32:45 +02:00
Adriane Boyd
f4339f9bff
Fix tokenizer cache flushing (#7836)
* Fix tokenizer cache flushing

Fix/simplify tokenizer init detection in order to fix cache flushing
when properties are modified.

* Remove init reloading logic

* Remove logic disabling `_reload_special_cases` on init
  * Setting `rules` last in `__init__` (as before) means that setting
    other properties doesn't reload any special cases
  * Reset `rules` first in `from_bytes` so that setting other properties
    during deserialization doesn't reload any special cases
    unnecessarily
* Reset all properties in `Tokenizer.from_bytes` to allow any settings
  to be `None`

* Also reset special matcher when special cache is flushed

* Remove duplicate special case validation

* Add test for special cases flushing

* Extend test for tokenizer deserialization of None values
2021-04-22 18:14:57 +10:00
Sofie Van Landeghem
cfad7e21d5
fix config parsing of ints/strings (#7755)
* add few failing tests for parsing integers and strings

* bump thinc to 8.0.3
2021-04-22 18:09:13 +10:00
Adriane Boyd
d2bdaa7823
Replace negative rows with 0 in StaticVectors (#7674)
* Replace negative rows with 0 in StaticVectors

Replace negative row indices with 0-vectors in `StaticVectors`.

* Increase versions related to StaticVectors

* Increase versions of all architctures and layers related to
`StaticVectors`
* Improve efficiency of 0-vector operations

Parallel `spacy-legacy` PR: https://github.com/explosion/spacy-legacy/pull/5

* Update config defaults to new versions

* Update docs
2021-04-22 18:04:15 +10:00
Sofie Van Landeghem
6f565cf39d
fix typo in entity_linker docs 2021-04-22 09:59:24 +02:00
Sofie Van Landeghem
2e746dbf32
update EL training data format in docs (#7839)
* update EL training data format

* fix typo

* all -1 because reasons
2021-04-22 08:50:09 +02:00
meghanabhange
49ff1126bf
Project Idea : denomme | Multilingual Name Detection (#7845)
* Add denomme

* spaCy contributor agreement

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-04-22 08:48:17 +02:00
Sam Edwardes
b8c6c10c6f
Added a logo to spaCyTextBlob (#7818)
* Added a logo to spaCyTextBlob

* Updated to better thumb
2021-04-22 08:41:55 +02:00
Diego Palma
bbade153ed
Add TRUNAJOD to spaCy universe. (#7754)
* Add TRUNAJOD to spaCy universe.

* Add trunajod logo and thumb.

Co-authored-by: Diego <dpalma@evernote.com>
2021-04-22 08:40:28 +02:00
Ines Montani
a9e5ae9b5c Auto-format [ci skip] 2021-04-22 10:58:05 +10:00
Ines Montani
5cbe414ce6
Merge pull request #7851 from plison/master [ci skip] 2021-04-22 10:56:35 +10:00
Pierre Lison
2f0ef2c9cc adding skweak to the SpaCy universe 2021-04-22 01:16:34 +02:00
Pierre Lison
debfb46088 adding skweak to the SpaCy universe 2021-04-22 00:58:09 +02:00
Shantam Raj
6017fcf693
Default code for Setting Entity annotations on the website errors (#7738)
* the default example for "Setting entity annotations" errors on Binder

* updating contributer info

* using a new variable to store original entities
2021-04-21 09:16:32 +02:00
Ines Montani
aad5ba13af
Merge pull request #7826 from richardpaulhudson/master
Add entry for Coreferee project to universe.json
2021-04-21 16:22:43 +10:00
hudsonr
2722424ec5 Added universe entry for Coreferee 2021-04-19 14:28:06 +02:00
langdonholmes
df541c6b5e
Update processing-pipelines.md to mention method for doc metadata (#7480)
* Update processing-pipelines.md

Under "things to try," inform users they can save metadata when using nlp.pipe(foobar, as_tuples=True)

Link to a new example on the attributes page detailing the following:

> ```
> data = [
>   ("Some text to process", {"meta": "foo"}),
>   ("And more text...", {"meta": "bar"})
> ]
> 
> for doc, context in nlp.pipe(data, as_tuples=True):
>     # Let's assume you have a "meta" extension registered on the Doc
>     doc._.meta = context["meta"]
> ```

from https://stackoverflow.com/questions/57058798/make-spacy-nlp-pipe-process-tuples-of-text-and-additional-information-to-add-as

* Updating the attributes section

Update the attributes section with example of how extensions can be used to store metadata.

* Update processing-pipelines.md

* Update processing-pipelines.md

Made as_tuples example executable and relocated to the end of the "Processing Text" section.

* Update processing-pipelines.md

* Update processing-pipelines.md

Removed extra line

* Reformat and rephrase

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-04-19 11:58:12 +02:00
Adriane Boyd
0e7f94b247
Update Tokenizer.explain with special matches (#7749)
* Update Tokenizer.explain with special matches

Update `Tokenizer.explain` and the pseudo-code in the docs to include
the processing of special cases that contain affixes or whitespace.

* Handle optional settings in explain

* Add test for special matches in explain

Add test for `Tokenizer.explain` for special cases containing affixes.
2021-04-19 19:08:20 +10:00
Adriane Boyd
07b41c38ae
Register CharEmbed layer (#7805) 2021-04-19 18:39:34 +10:00
Sofie Van Landeghem
c786e98e56
assemble CLI command (#7783)
* assemble CLI command

* ensure assemble runs even without training section

* cleanup
2021-04-19 18:39:11 +10:00
Adriane Boyd
15bd230413
Set catalogue lower pin to v2.0.3 (#7762)
* Set catalogue lower pin to v2.0.2

* Update importlib-metadata pins to match

* Require catalogue v2.0.3

Switch to vendored `importlib-metadata` v3.2.0 provided by `catalogue`.
2021-04-19 18:37:17 +10:00
Adriane Boyd
1ad646cbcf
Improve checks for sourced components (#7490)
* Improve checks for sourced components

* Remove language class checks

* Convert python warning to logger warning

* Remove unused warning

* Fix formatting
2021-04-19 18:36:32 +10:00
Sofie Van Landeghem
05bdbe28bb
Fix vectors data on GPU (#7626)
* ensure vectors data is stored on right device

* ensure the added vector is on the right device

* move vector to numpy before iterating

* move best_rows to numpy before iterating
2021-04-19 18:30:03 +10:00
Bram Vanroy
ed561cf428
Terminology: deprecated vs obsolete (#7621)
* Terminology: deprecated vs obsolete

Typically, deprecated is used for functionality that is bound to become unavailable but that can still be used. Obsolete is used for features that have been removed. In E941, I think what is meant is "obsolete" since loading a model by a shortcut simply does not work anymore (and throws an error). This is different from downloading a model with a shortcut, which is deprecated but still works.

In light of this, perhaps all other error codes should be checked as well.

* clarify that the link command is removed and not just deprecated

Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2021-04-12 14:37:00 +02:00
Sofie Van Landeghem
8d7af5b2b1
Ensure hyphen in config file works as string value (#7642)
* add test for serializing '-' in a config file

* bump srsly to 2.4.1
2021-04-12 14:35:57 +02:00
Sofie Van Landeghem
27dbbb9903
Bugfix/nel crossing sentence (#7630)
* ensure each entity gets a KB ID, even when it's not within a sentence

* cleanup
2021-04-12 18:08:01 +10:00
Adriane Boyd
673e2bc4c0
Add usage docs for streamed train corpora (#7693) 2021-04-09 16:15:38 +02:00
Adriane Boyd
73a8c0f992
Update debug data further for v3 (#7602)
* Update debug data further for v3

* Remove new/existing label distinction (new labels are not immediately
distinguishable because the pipeline is already initialized)
* Warn on missing labels in training data for all components except parser
* Separate textcat and textcat_multilabel sections
* Add section for morphologizer

* Reword missing label warnings
2021-04-09 11:53:42 +02:00
Stanislav Schmidt
2516896849
Make vocab update in get_docs deterministic (#7603)
* Make vocab update in get_docs deterministic

The attribute `DocBin.strings` is a set. In `DocBin.get_docs`
a given vocab is updated by iterating over this set.
Iteration over a python set produces an arbitrary ordering,
therefore vocab is updated non-deterministically.

When training (fine-tuning) a spacy model, the base model's
vocabulary will be updated with the new vocabulary in the
training data in exactly the way described above. After
serialization, the file `model/vocab/strings.json` will
be sorted in an arbitrary way. This prevents reproducible
model training.

* Revert "Make vocab update in get_docs deterministic"

This reverts commit d6b87a2f55.

* Sort strings in StringStore serialization

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-04-09 11:53:13 +02:00
Adriane Boyd
8008e2f75b
Use morph hash in lemmatizer cache key (#7690)
Use the morph hash rather than the `MorphAnalysis` object in the cache
key so that the `Lemmatizer` can be pickled.
2021-04-08 13:22:38 +02:00
Sofie Van Landeghem
3e5bd5055e
expand quickstart widget with cuda 11.1 and 11.2 (#7615) 2021-04-08 12:25:42 +02:00