* Fix inference of epoch_resume
When an epoch_resume value is not specified individually, it can often
be inferred from the filename. The value inference code was there but
the value wasn't passed back to the training loop.
This also adds a specific error in the case where no epoch_resume value
is provided and it can't be inferred from the filename.
* Add new error
* Always use the epoch resume value if specified
Before this the value in the filename was used if found
* Fix vectors check for sourced components
Since vectors are not loaded when components are sourced, store a hash
for the vectors of each sourced component and compare it to the loaded
vectors after the vectors are loaded from the `[initialize]` block.
* Pop temporary info
* Remove stored hash in remove_pipe
* Add default for pop
* Add additional convert/debug/assemble CLI tests
* Support a cfg field in transition system
* Make NER 'has gold' check use right alignment for span
* Pass 'negative_samples_key' property into NER transition system
* Add field for negative samples to NER transition system
* Check neg_key in NER has_gold
* Support negative examples in NER oracle
* Test for negative examples in NER
* Fix name of config variable in NER
* Remove vestiges of old-style partial annotation
* Remove obsolete tests
* Add comment noting lack of support for negative samples in parser
* Additions to "neg examples" PR (#8201)
* add custom error and test for deprecated format
* add test for unlearning an entity
* add break also for Begin's cost
* add negative_samples_key property on Parser
* rename
* extend docs & fix some older docs issues
* add subclass constructors, clean up tests, fix docs
* add flaky test with ValueError if gold parse was not found
* remove ValueError if n_gold == 0
* fix docstring
* Hack in environment variables to try out training
* Remove hack
* Remove NER hack, and support 'negative O' samples
* Fix O oracle
* Fix transition parser
* Remove 'not O' from oracle
* Fix NER oracle
* check for spans in both gold.ents and gold.spans and raise if so, to prevent memory access violation
* use set instead of list in consistency check
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
To avoid config errors during training when `[corpora.pretrain.path]` is
`None` with the default `spacy.JsonlCorpus.v1` reader, make the reader
path optional, similar to `spacy.Corpus.v1`.
* Add training option to set annotations on update
Add a `[training]` option called `set_annotations_on_update` to specify
a list of components for which the predicted annotations should be set
on `example.predicted` immediately after that component has been
updated. The predicted annotations can be accessed by later components
in the pipeline during the processing of the batch in the same `update`
call.
* Rename to annotates / annotating_components
* Add test for `annotating_components` when training from config
* Add documentation
* Add callback to copy vocab/tokenizer from model
Add callback `spacy.copy_from_base_model.v1` to copy the tokenizer
settings and/or vocab (including vectors) from a base model.
* Move spacy.copy_from_base_model.v1 to spacy.training.callbacks
* Add documentation
* Modify to specify model as tokenizer and vocab params
* Update sent_starts in Example.from_dict
Update `sent_starts` for `Example.from_dict` so that `Optional[bool]`
values have the same meaning as for `Token.is_sent_start`.
Use `Optional[bool]` as the type for sent start values in the docs.
* Use helper function for conversion to ternary ints
* extend span scorer with consider_label and allow_overlap
* unit test for spans y2x overlap
* add score_spans unit test
* docs for new fields in scorer.score_spans
* rename to include_label
* spell out if-else for clarity
* rename to 'labeled'
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Data in the JSON format is split into sentences, and each sentence is
saved with is_sent_start flags. Currently the flags are 1 for the first
token and 0 for the others. When deserialized this results in a pattern
of True, None, None, None... which makes single-sentence documents look
as though they haven't had sentence boundaries set.
Since items saved in JSON format have been split into sentences already,
the is_sent_start values should all be True or False.
* Support infinite generators for training corpora
Support a training corpus with an infinite generator in the `spacy
train` training loop:
* Revert `create_train_batches` to the state where an infinite generator
can be used as the in the first epoch of exactly one epoch without
resulting in a memory leak (`max_epochs != 1` will still result in a
memory leak)
* Move the shuffling for the first epoch into the corpus reader,
renaming it to `spacy.Corpus.v2`.
* Switch to training option for shuffling in memory
Training loop:
* Add option `training.shuffle_train_corpus_in_memory` that controls
whether the corpus is loaded in memory once and shuffled in the training
loop
* Revert changes to `create_train_batches` and rename to
`create_train_batches_with_shuffling` for use with `spacy.Corpus.v1` and
a corpus that should be loaded in memory
* Add `create_train_batches_without_shuffling` for a corpus that
should not be shuffled in the training loop: the corpus is merely
batched during training
Corpus readers:
* Restore `spacy.Corpus.v1`
* Add `spacy.ShuffledCorpus.v1` for a corpus shuffled in memory in the
reader instead of the training loop
* In combination with `shuffle_train_corpus_in_memory = False`, each
epoch could result in a different augmentation
* Refactor create_train_batches, validation
* Rename config setting to `training.shuffle_train_corpus`
* Refactor to use a single `create_train_batches` method with a
`shuffle` option
* Only validate `get_examples` in initialize step if:
* labels are required
* labels are not provided
* Switch back to max_epochs=-1 for streaming train corpus
* Use first 100 examples for stream train corpus init
* Always check validate_get_examples in initialize
See here:
https://github.com/explosion/spaCy/discussions/7463
Still need to check if there are any side effects of listeners being
present but not in the pipeline, but this commit will silence the
warnings.
* Fix aborted/skipped augmentation for `spacy.orth_variants.v1` if
lowercasing was enabled for an example
* Simplify `spacy.orth_variants.v1` for `Example` vs. `GoldParse`
* Preserve reference tokenization in `spacy.lower_case.v1`
* initialize NLP with train corpus
* add more pretraining tests
* more tests
* function to fetch tok2vec layer for pretraining
* clarify parameter name
* test different objectives
* formatting
* fix check for static vectors when using vectors objective
* clarify docs
* logger statement
* fix init_tok2vec and proc.initialize order
* test training after pretraining
* add init_config tests for pretraining
* pop pretraining block to avoid config validation errors
* custom errors
* Fix patience for identical scores
Fix training patience so that the earliest best step is chosen for
identical max scores.
* Restore break, remove print
* Explicitly define best_step for clarity
* Allow output_path to be None during training
* Fix cat scoring (?)
* Improve error message for weighted None score
* Improve messages
So we can call this in other places etc.
* FIx output path check
* Use latest wasabi
* Revert "Improve error message for weighted None score"
This reverts commit 7059926763.
* Exclude None scores from final score by default
It's otherwise very difficult to keep track of the score weights if we modify a config programmatically, source components etc.
* Update warnings and use logger.warning
* warn when frozen components break listener pattern
* few notes in the documentation
* update arg name
* formatting
* cleanup
* specify listeners return type
