Commit Graph

11629 Commits

Author SHA1 Message Date
Ines Montani
b1f45c9da3 obj -> doclike 2020-05-21 14:19:58 +02:00
Ines Montani
69fb4bedf2 Revert "doc_or_span -> obj"
This reverts commit 78bb9ff5e0.
2020-05-21 14:14:28 +02:00
Ines Montani
d8f3190c0a Tidy up and auto-format 2020-05-21 14:14:01 +02:00
Ines Montani
56de520afd Try to fix tests on Travis (2.7) 2020-05-21 14:04:57 +02:00
Ines Montani
f2a131bd9a
Merge pull request #5461 from kevinlu1248/master 2020-05-21 13:53:10 +02:00
adrianeboyd
d45602bc11
Merge branch 'master' into feature/omit-extra-lexeme-info 2020-05-21 10:26:01 +02:00
adrianeboyd
49ef06d793
Add option for base model in init-model CLI (#5467)
Intended for languages like Chinese with a custom tokenizer.
2020-05-20 18:49:11 +02:00
Adriane Boyd
4b229bfc22 Improve handling of NER in CoNLL-U MISC 2020-05-20 18:48:51 +02:00
Matthew Honnibal
609c0ba557
Fix accidentally quadratic runtime in Example.split_sents (#5464)
* Tidy up train-from-config a bit

* Fix accidentally quadratic perf in TokenAnnotation.brackets

When we're reading in the gold data, we had a nested loop where
we looped over the brackets for each token, looking for brackets
that start on that word. This is accidentally quadratic, because
we have one bracket per word (for the POS tags). So we had
an O(N**2) behaviour here that ended up being pretty slow.

To solve this I'm indexing the brackets by their starting word
on the TokenAnnotations object, and having a property to provide
the previous view.

* Fixes
2020-05-20 18:48:18 +02:00
Kevin Lu
c7c4cd5fe1
Changed pyate code example in universe.json 2020-05-20 09:11:32 -07:00
Adriane Boyd
daaa7bf451 Add option to omit extra lexeme tables in CLI 2020-05-20 15:51:44 +02:00
Adriane Boyd
8cba0e41d8 Return lowercase form as default except for PROPN 2020-05-20 15:35:08 +02:00
adrianeboyd
9393253b66
Remove peeking from Parser.begin_training (#5456)
Inspect all instances in `Parser.begin_training` rather than only the
first 1000.
2020-05-20 15:18:06 +02:00
Ines Montani
78bb9ff5e0 doc_or_span -> obj 2020-05-20 14:56:52 +02:00
Matthw Honnibal
60e8da4813 Tidy up train-from-config a bit 2020-05-20 12:56:27 +02:00
Matthw Honnibal
fda7355508 Fix train-from-config 2020-05-20 12:30:21 +02:00
Matthw Honnibal
24efd54a42 Merge from develop 2020-05-20 12:27:31 +02:00
Sofie Van Landeghem
7f5715a081
Various fixes to NEL functionality, Example class etc (#5460)
* setting KB in the EL constructor, similar to how the model is passed on

* removing wikipedia example files - moved to projects

* throw an error when nlp.update is called with 2 positional arguments

* rewriting the config logic in create pipe to accomodate for other objects (e.g. KB) in the config

* update config files with new parameters

* avoid training pipeline components that don't have a model (like sentencizer)

* various small fixes + UX improvements

* small fixes

* set thinc to 8.0.0a9 everywhere

* remove outdated comment
2020-05-20 11:41:12 +02:00
Adriane Boyd
4fa9670537 Extend lemmatizer rules for all UPOS tags 2020-05-20 10:15:43 +02:00
Kevin Lu
291b9ad7b9
Update CONTRIBUTOR_AGREEMENT.md 2020-05-19 20:29:53 -07:00
Kevin Lu
9a1a535215
Create kevinlu1248.md 2020-05-19 20:25:45 -07:00
Kevin Lu
a23b3a5a50
Update CONTRIBUTOR_AGREEMENT.md 2020-05-19 20:24:24 -07:00
Kevin Lu
0a5b140235
Update universe.json 2020-05-19 20:12:21 -07:00
Matthew Honnibal
664a3603b0 Set version to v3.0.0.dev8 2020-05-19 17:15:39 +02:00
adrianeboyd
40e65d6f63
Fix most_similar for vectors with unused rows (#5348)
* Fix most_similar for vectors with unused rows

Address issues related to the unused rows in the vector table and
`most_similar`:

* Update `most_similar()` to search only through rows that are in use
according to `key2row`.

* Raise an error when `most_similar(n=n)` is larger than the number of
vectors in the table.

* Set and restore `_unset` correctly when vectors are added or
deserialized so that new vectors are added in the correct row.

* Set data and keys to the same length in `Vocab.prune_vectors()` to
avoid spurious entries in `key2row`.

* Fix regression test using `most_similar`

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-19 16:41:26 +02:00
Matthew Honnibal
a2830c3ef5 Use thinc 8.0.0a9 2020-05-19 16:23:11 +02:00
Sofie Van Landeghem
f00de445dd
default models defined in component decorator (#5452)
* move defaults to pipeline and use in component decorator

* black formatting

* relative import
2020-05-19 16:20:03 +02:00
adrianeboyd
70da1fd2d6
Add warning for misaligned character offset spans (#5007)
* Add warning for misaligned character offset spans

* Resolve conflict

* Filter warnings in example scripts

Filter warnings in example scripts to show warnings once, in particular
warnings about misaligned entities.

Co-authored-by: Ines Montani <ines@ines.io>
2020-05-19 16:01:18 +02:00
adrianeboyd
0061992d95
Update Polish tokenizer for UD_Polish-PDB (#5432)
Update Polish tokenizer for UD_Polish-PDB, which is a relatively major
change from the existing tokenizer. Unused exceptions files and
conflicting test cases removed.

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-19 15:59:55 +02:00
adrianeboyd
a5cd203284
Reduce stored lexemes data, move feats to lookups (#5238)
* Reduce stored lexemes data, move feats to lookups

* Move non-derivable lexemes features (`norm / cluster / prob`) to
`spacy-lookups-data` as lookups
  * Get/set `norm` in both lookups and `LexemeC`, serialize in lookups
  * Remove `cluster` and `prob` from `LexemesC`, get/set/serialize in
    lookups only
* Remove serialization of lexemes data as `vocab/lexemes.bin`
  * Remove `SerializedLexemeC`
  * Remove `Lexeme.to_bytes/from_bytes`
* Modify normalization exception loading:
  * Always create `Vocab.lookups` table `lexeme_norm` for
    normalization exceptions
  * Load base exceptions from `lang.norm_exceptions`, but load
    language-specific exceptions from lookups
  * Set `lex_attr_getter[NORM]` including new lookups table in
    `BaseDefaults.create_vocab()` and when deserializing `Vocab`
* Remove all cached lexemes when deserializing vocab to override
  existing normalizations with the new normalizations (as a replacement
  for the previous step that replaced all lexemes data with the
  deserialized data)

* Skip English normalization test

Skip English normalization test because the data is now in
`spacy-lookups-data`.

* Remove norm exceptions

Moved to spacy-lookups-data.

* Move norm exceptions test to spacy-lookups-data

* Load extra lookups from spacy-lookups-data lazily

Load extra lookups (currently for cluster and prob) lazily from the
entry point `lg_extra` as `Vocab.lookups_extra`.

* Skip creating lexeme cache on load

To improve model loading times, do not create the full lexeme cache when
loading. The lexemes will be created on demand when processing.

* Identify numeric values in Lexeme.set_attrs()

With the removal of a special case for `PROB`, also identify `float` to
avoid trying to convert it with the `StringStore`.

* Skip lexeme cache init in from_bytes

* Unskip and update lookups tests for python3.6+

* Update vocab pickle to include lookups_extra

* Update vocab serialization tests

Check strings rather than lexemes since lexemes aren't initialized
automatically, account for addition of "_SP".

* Re-skip lookups test because of python3.5

* Skip PROB/float values in Lexeme.set_attrs

* Convert is_oov from lexeme flag to lex in vectors

Instead of storing `is_oov` as a lexeme flag, `is_oov` reports whether
the lexeme has a vector.

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-19 15:59:14 +02:00
Sofie Van Landeghem
0d94737857
Feature toggle_pipes (#5378)
* make disable_pipes deprecated in favour of the new toggle_pipes

* rewrite disable_pipes statements

* update documentation

* remove bin/wiki_entity_linking folder

* one more fix

* remove deprecated link to documentation

* few more doc fixes

* add note about name change to the docs

* restore original disable_pipes

* small fixes

* fix typo

* fix error number to W096

* rename to select_pipes

* also make changes to the documentation

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-18 22:27:10 +02:00
Matthew Honnibal
333b1a308b
Adapt parser and NER for transformers (#5449)
* Draft layer for BILUO actions

* Fixes to biluo layer

* WIP on BILUO layer

* Add tests for BILUO layer

* Format

* Fix transitions

* Update test

* Link in the simple_ner

* Update BILUO tagger

* Update __init__

* Import simple_ner

* Update test

* Import

* Add files

* Add config

* Fix label passing for BILUO and tagger

* Fix label handling for simple_ner component

* Update simple NER test

* Update config

* Hack train script

* Update BILUO layer

* Fix SimpleNER component

* Update train_from_config

* Add biluo_to_iob helper

* Add IOB layer

* Add IOBTagger model

* Update biluo layer

* Update SimpleNER tagger

* Update BILUO

* Read random seed in train-from-config

* Update use of normal_init

* Fix normalization of gradient in SimpleNER

* Update IOBTagger

* Remove print

* Tweak masking in BILUO

* Add dropout in SimpleNER

* Update thinc

* Tidy up simple_ner

* Fix biluo model

* Unhack train-from-config

* Update setup.cfg and requirements

* Add tb_framework.py for parser model

* Try to avoid memory leak in BILUO

* Move ParserModel into spacy.ml, avoid need for subclass.

* Use updated parser model

* Remove incorrect call to model.initializre in PrecomputableAffine

* Update parser model

* Avoid divide by zero in tagger

* Add extra dropout layer in tagger

* Refine minibatch_by_words function to avoid oom

* Fix parser model after refactor

* Try to avoid div-by-zero in SimpleNER

* Fix infinite loop in minibatch_by_words

* Use SequenceCategoricalCrossentropy in Tagger

* Fix parser model when hidden layer

* Remove extra dropout from tagger

* Add extra nan check in tagger

* Fix thinc version

* Update tests and imports

* Fix test

* Update test

* Update tests

* Fix tests

* Fix test

Co-authored-by: Ines Montani <ines@ines.io>
2020-05-18 22:23:33 +02:00
Ines Montani
3100c97e69
Merge pull request #5441 from svlandeg/fix/updating 2020-05-18 10:53:41 +02:00
Ines Montani
e8ff4c1e6a
Pin flake8 version 2020-05-18 10:50:21 +02:00
Ines Montani
a41e28ceba
Merge pull request #5436 from ilivans/fix_errors_with_codes 2020-05-18 10:45:56 +02:00
Ilkyu Ju
72a25c9cef
Very minor issues in Korean example sentences (#5446)
* Add contributor agreement

* Improve ko translation of example sentences

I fixed unnatural translations and word spacing errors.

* Update osori.md
2020-05-17 13:43:34 +02:00
svlandeg
6fb6a8518c bump to 3.0.0.dev7 and thinc to 8.0.0a8 2020-05-15 13:25:54 +02:00
svlandeg
047f3d7d94 remove ops argument for Adam 2020-05-15 13:25:00 +02:00
svlandeg
79d4f196e5 pin flak8 to 3.5.0 2020-05-15 11:53:01 +02:00
svlandeg
e0fda2bd81 throw warning when model_cfg is None 2020-05-15 11:02:10 +02:00
adrianeboyd
908dea3939
Skip duplicate lexeme rank setting (#5401)
Skip duplicate lexeme rank setting within
`_fix_pretrained_vectors_name()`.
2020-05-14 18:26:12 +02:00
adrianeboyd
f49e2810e6
Add Polish lemmatizer (#5413)
* Add Polish lemmatizer

Contributed by @ryszardtuora

* Add missing import
2020-05-14 18:23:19 +02:00
adrianeboyd
e63880e081
Use Token.sent_start for Span.sent (#5439)
Use `Token.sent_start` for sentence boundaries in `Span.sent` so that
`Doc.sents` and `Span.sent` return the same sentence boundaries.
2020-05-14 18:22:51 +02:00
adrianeboyd
780b869345
Fix syntax iterators for Persian (#5437) 2020-05-14 16:51:03 +02:00
Ilia Ivanov
ee8fe37474 Add ilivans' contributor agreement 2020-05-14 15:59:06 +02:00
Ilia Ivanov
712d9d4820 fixup! Fix ErrorsWithCodes().__class__ return value 2020-05-14 15:45:58 +02:00
Ilia Ivanov
a987e9e45d Fix ErrorsWithCodes().__class__ return value 2020-05-14 14:14:15 +02:00
Vishnu Priya VR
9ce059dd06
Limiting noun_chunks for specific languages (#5396)
* Limiting noun_chunks for specific langauges

* Limiting noun_chunks for specific languages

Contributor Agreement

* Addressing review comments

* Removed unused fixtures and imports

* Add fa_tokenizer in test suite

* Use fa_tokenizer in test

* Undo extraneous reformatting

Co-authored-by: adrianeboyd <adrianeboyd@gmail.com>
2020-05-14 12:58:06 +02:00
Sofie Van Landeghem
b04738903e
prevent None in gold fields (#5425)
* set gold fields to empty list instead of keeping them as None

* add unit test
2020-05-13 22:08:50 +02:00
adrianeboyd
113e7981d0
Check that row is within bounds when adding vector (#5430)
Check that row is within bounds for the vector data array when adding a
vector.

Don't add vectors with rank OOV_RANK in `init-model` (change is due to
shift from OOV as 0 to OOV as OOV_RANK).
2020-05-13 22:08:28 +02:00