* Fix problem with universe pages using `docker` language
* Fix problem with universe pages using `r` language
* Add fallback, in case code language is unknown
* Add SpanMarker for NER to spaCy universe
* Escape the newlines in the text in the code example
Or at least, attempt to
* Remove now unnecessary import
* Disable NER pipeline component in code example
This is a really odd bug, where Firefox doesn't re-render the `code` element, even though `children` changed.
Two things fixed that:
- remove the `language-ini` `className`
- replace the `code` block with a `div`
Both are not ideal. Therefor this solution adds an inner `div` that now has the classes while still maintaining the semantic `code` element.
I couldn't find any explanation for why this is happening and why it only happens in Firefox. I assume it is a bug caused by one of our many dependencies (or their interplay)
To make matters worse: This bug *doesn't* occure when running the site in dev mode. You have to build and serve the site to recreate it.
* add vetiver to spacy universe
* remove image
* update logo to render correctly in thumbnail
* apply Basil's suggestion
Co-authored-by: Basile Dura <bdura@users.noreply.github.com>
* refer to the same model
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Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Basile Dura <bdura@users.noreply.github.com>
* parsigs universe
* added model installation explanation in the description
* Update website/meta/universe.json
Co-authored-by: Basile Dura <bdura@users.noreply.github.com>
* added model installement instruction in the code example
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Co-authored-by: Basile Dura <bdura@users.noreply.github.com>
Replace `progress_bar = "all_steps"` with `progress_bar = "eval"`, which is consistent with the default behavior for `spacy.ConsoleLogger.v1` and `spacy.ConsoleLogger.v2`.
* [wip] Update
* [wip] Update
* Add initial port
* [wip] Update
* Fix all imports
* Add spancat_exclusive to pipeline
* [WIP] Update
* [ci skip] Add breakpoint for debugging
* Use spacy.SpanCategorizer.v1 as default archi
* Update spacy/pipeline/spancat_exclusive.py
Co-authored-by: kadarakos <kadar.akos@gmail.com>
* [ci skip] Small updates
* Use Softmax v2 directly from thinc
* Cache the label map
* Fix mypy errors
However, I ignored line 370 because it opened up a bunch of type errors
that might be trickier to solve and might lead to a more complicated
codebase.
* avoid multiplication with 1.0
Co-authored-by: kadarakos <kadar.akos@gmail.com>
* Update spacy/pipeline/spancat_exclusive.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update component versions to v2
* Add scorer to docstring
* Add _n_labels property to SpanCategorizer
Instead of using len(self.labels) in initialize() I am using a private
property self._n_labels. This achieves implementation parity and allows
me to delete the whole initialize() method for spancat_exclusive (since
it's now the same with spancat).
* Inherit from SpanCat instead of TrainablePipe
This commit changes the inheritance structure of Exclusive_Spancat,
now it's inheriting from SpanCategorizer than TrainablePipe. This
allows me to remove duplicate methods that are already present in
the parent function.
* Revert documentation link to spancat
* Fix init call for exclusive spancat
* Update spacy/pipeline/spancat_exclusive.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Import Suggester from spancat
* Include zero_init.v1 for spancat
* Implement _allow_extra_label to use _n_labels
To ensure that spancat / spancat_exclusive cannot be resized after
initialization, I inherited the _allow_extra_label() method from
spacy/pipeline/trainable_pipe.pyx and used self._n_labels instead
of len(self.labels) for checking.
I think that changing it locally is a better solution rather than
forcing each class that inherits TrainablePipe to use the self._n_labels
attribute.
Also note that I turned-off black formatting in this block of code
because it reads better without the overhang.
* Extend existing tests to spancat_exclusive
In this commit, I extended the existing tests for spancat to include
spancat_exclusive. I parametrized the test functions with 'name'
(similar var name with textcat and textcat_multilabel) for each
applicable test.
TODO: Add overfitting tests for spancat_exclusive
* Update documentation for spancat
* Turn on formatting for allow_extra_label
* Remove initializers in default config
* Use DEFAULT_EXCL_SPANCAT_MODEL
I also renamed spancat_exclusive_default_config into
spancat_excl_default_config because black does some not pretty
formatting changes.
* Update documentation
Update grammar and usage
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Clarify docstring for Exclusive_SpanCategorizer
* Remove mypy ignore and typecast labels to list
* Fix documentation API
* Use a single variable for tests
* Update defaults for number of rows
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Put back initializers in spancat config
Whenever I remove model.scorer.init_w and model.scorer.init_b,
I encounter an error in the test:
SystemError: <method '__getitem__' of 'dict' objects> returned a result
with an error set.
My Thinc version is 8.1.5, but I can't seem to check what's causing the
error.
* Update spancat_exclusive docstring
* Remove init_W and init_B parameters
This commit is expected to fail until the new Thinc release.
* Require thinc>=8.1.6 for serializable Softmax defaults
* Handle zero suggestions to make tests pass
I'm not sure if this is the most elegant solution. But what should
happen is that the _make_span_group function MUST return an empty
SpanGroup if there are no suggestions.
The error happens when the 'scores' variable is empty. We cannot
get the 'predicted' and other downstream vars.
* Better approach for handling zero suggestions
* Update website/docs/api/spancategorizer.md
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spancategorizer headers
* Apply suggestions from code review
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Add default value in negative_weight in docs
* Add default value in allow_overlap in docs
* Update how spancat_exclusive is constructed
In this commit, I added the following:
- Put the default values of negative_weight and allow_overlap
in the default_config dictionary.
- Rename make_spancat -> make_exclusive_spancat
* Run prettier on spancategorizer.mdx
* Change exactly one -> at most one
* Add suggester documentation in Exclusive_SpanCategorizer
* Add suggester to spancat docstrings
* merge multilabel and singlelabel spancat
* rename spancat_exclusive to singlelable
* wire up different make_spangroups for single and multilabel
* black
* black
* add docstrings
* more docstring and fix negative_label
* don't rely on default arguments
* black
* remove spancat exclusive
* replace single_label with add_negative_label and adjust inference
* mypy
* logical bug in configuration check
* add spans.attrs[scores]
* single label make_spangroup test
* bugfix
* black
* tests for make_span_group with negative labels
* refactor make_span_group
* black
* Update spacy/tests/pipeline/test_spancat.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* remove duplicate declaration
* Update spacy/pipeline/spancat.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* raise error instead of just print
* make label mapper private
* update docs
* run prettier
* Update website/docs/api/spancategorizer.mdx
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update website/docs/api/spancategorizer.mdx
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spacy/pipeline/spancat.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spacy/pipeline/spancat.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spacy/pipeline/spancat.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spacy/pipeline/spancat.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* don't keep recomputing self._label_map for each span
* typo in docs
* Intervals to private and document 'name' param
* Update spacy/pipeline/spancat.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spacy/pipeline/spancat.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* add Tag to new features
* replace tags
* revert
* revert
* revert
* revert
* Update website/docs/api/spancategorizer.mdx
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update website/docs/api/spancategorizer.mdx
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* prettier
* Fix merge
* Update website/docs/api/spancategorizer.mdx
* remove references to 'single_label'
* remove old paragraph
* Add spancat_singlelabel to config template
* Format
* Extend init config tests
---------
Co-authored-by: kadarakos <kadar.akos@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Make empty_kb() configurable.
* Format.
* Update docs.
* Be more specific in KB serialization test.
* Update KB serialization tests. Update docs.
* Remove doc update for batched candidate generation.
* Fix serialization of subclassed KB in tests.
* Format.
* Update docstring.
* Update docstring.
* Switch from pickle to json for custom field serialization.
* Add immediate left/right child/parent dependency relations
* Add tests for new REL_OPs: `>+`, `>-`, `<+`, and `<-`.
---------
Co-authored-by: Tan Long <tanloong@foxmail.com>
* Fix FUZZY operator definition
The default length of the FUZZY operator is 2 and not 3.
* adjust edit distance in matcher usage docs too
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Co-authored-by: svlandeg <svlandeg@github.com>
* Add span_id to Span.char_span, update Doc/Span.char_span docs
`Span.char_span(id=)` should be removed in the future.
* Also use Union[int, str] in Doc docstring
