Commit Graph

1477 Commits

Author SHA1 Message Date
Ines Montani
d2da117114 Also support passing list to Language.disable_pipes (#4521)
* Also support passing list to Language.disable_pipes

* Adjust internals
2019-10-25 16:19:08 +02:00
Ines Montani
cc05d9dad6 Auto-format [ci skip] 2019-10-24 16:21:08 +02:00
Ines Montani
73dc63d3bf Tidy up and auto-format [ci skip] 2019-10-24 16:20:48 +02:00
Ines Montani
9a849fe54e Explicitly catch warning in test 2019-10-24 16:16:27 +02:00
adrianeboyd
8516e9d53b Support train dict format as JSONL (#4471)
* Support train dict format as JSONL

* Add (overly simple) check for dict vs. tuple to read JSONL lines as
either train dicts or train tuples

* Extend JSON/JSONL roundtrip conversion tests using `docs_to_json()`
and `GoldCorpus.train_tuples`

* Revert docs to default JSON output with convert
2019-10-23 16:01:44 +02:00
Matthew Honnibal
9489c5f6b2 Clip most_similar to range [-1, 1] (fixes #4506) (#4507)
* Clip most_similar to range [-1, 1]

* Add/fix vectors tests

* Fix test
2019-10-22 20:10:42 +02:00
Ines Montani
74a19aeb1c Add xfailing test [ci skip] 2019-10-22 18:18:43 +02:00
gustavengstrom
050e2445a8 Adding noun_chunks to the Swedish language model (sv) (#4422)
* Create syntax_iterators.py

Replica of spacy/lang/fr/syntax_iterators.py

* Added import statements for SYNTAX_ITERATORS

* Create gustavengstrom.md

* Added "dobj" to list of labels in noun_chunks method and a test_noun_chunks method to the  Swedish language model.

* Delete README-checkpoint.md


Co-authored-by: Gustav <gustav@davcon.se>
Co-authored-by: Ines Montani <ines@ines.io>
2019-10-21 12:57:06 +02:00
adrianeboyd
f5c551a43a Checks/errors related to ill-formed IOB input in CLI convert and debug-data (#4487)
* Error for ill-formed input to iob_to_biluo()

Check for empty label in iob_to_biluo(), which can result from
ill-formed input.

* Check for empty NER label in debug-data
2019-10-21 12:20:28 +02:00
Sofie Van Landeghem
d5d55312b2 prevent division by zero in most_similar method (#4488) 2019-10-21 12:04:46 +02:00
Ines Montani
181c01f629 Tidy up and auto-format 2019-10-18 11:27:38 +02:00
Daniel King
e646956176 Most similar bug (#4446)
* Add batch size indexing

* Don't sort if n == 1

* Add test for most similar vectors issue

* Change > to >=
2019-10-16 23:18:55 +02:00
adrianeboyd
275c9ad872 Allow int values in token patterns (#4444)
* Add missing int value option to top-level pattern validation in Matcher

* Adjust existing tests accordingly

* Add new test for valid pattern `{"LENGTH": int}`
2019-10-16 13:40:18 +02:00
Sofie Van Landeghem
7d1efac4eb Fix remove pattern from matcher (#4454)
* raise specific error when removing a matcher rule that doesn't exist

* rephrasing

* bugfix in remove matcher + extended unit test
2019-10-16 13:34:58 +02:00
Sofie Van Landeghem
2d249a9502 KB extensions and better parsing of WikiData (#4375)
* fix overflow error on windows

* more documentation & logging fixes

* md fix

* 3 different limit parameters to play with execution time

* bug fixes directory locations

* small fixes

* exclude dev test articles from prior probabilities stats

* small fixes

* filtering wikidata entities, removing numeric and meta items

* adding aliases from wikidata also to the KB

* fix adding WD aliases

* adding also new aliases to previously added entities

* fixing comma's

* small doc fixes

* adding subclassof filtering

* append alias functionality in KB

* prevent appending the same entity-alias pair

* fix for appending WD aliases

* remove date filter

* remove unnecessary import

* small corrections and reformatting

* remove WD aliases for now (too slow)

* removing numeric entities from training and evaluation

* small fixes

* shortcut during prediction if there is only one candidate

* add counts and fscore logging, remove FP NER from evaluation

* fix entity_linker.predict to take docs instead of single sentences

* remove enumeration sentences from the WP dataset

* entity_linker.update to process full doc instead of single sentence

* spelling corrections and dump locations in readme

* NLP IO fix

* reading KB is unnecessary at the end of the pipeline

* small logging fix

* remove empty files
2019-10-14 12:28:53 +02:00
Peter Gilles
428887b8f2 Initial commit: New language Luxembourgish (lb) (#4424)
* new language: Luxembourgish (lb)

* update

* update

* Update and rename .github/CONTRIBUTOR_AGREEMENT.md to .github/contributors/PeterGilles.md

* Update and rename .github/contributors/PeterGilles.md to .github/CONTRIBUTOR_AGREEMENT.md

* Update norm_exceptions.py

* Delete README.md

* moved test_lemma.py

* deactivated 'lemma_lookup = LOOKUP'

* update

* Update conftest.py

* update

* tests updated

* import unicode_literals

* Update spacy/tests/lang/lb/test_text.py

Co-Authored-By: Ines Montani <ines@ines.io>

* Create PeterGilles.md
2019-10-14 12:27:50 +02:00
adrianeboyd
98a961a60e Fix PhraseMatcher.remove for overlapping patterns (#4437) 2019-10-14 12:19:51 +02:00
adrianeboyd
6f54e59fe7 Fix util.filter_spans() to prefer first span in overlapping sam… (#4414)
* Update util.filter_spans() to prefer earlier spans

* Add filter_spans test for first same-length span

* Update entity relation example to refer to util.filter_spans()
2019-10-10 17:00:03 +02:00
Sofie Van Landeghem
5efae495f1 Error when removing a matcher rule that doesn't exist (#4420)
* raise specific error when removing a matcher rule that doesn't exist

* rephrasing
2019-10-10 14:01:53 +02:00
Matthew Honnibal
ddd6fda59c Add registry for model creation functions ('architectures') (#4395)
* Add architecture registry

* Add test for arch registry

* Add error for model architectures
2019-10-08 12:21:03 +02:00
tamuhey
650cbfe82d multiprocessing pipe (#1303) (#4371)
* refactor: separate formatting docs and golds in Language.update

* fix return typo

* add pipe test

* unpickleable object cannot be assigned to p.map

* passed test pipe

* passed test!

* pipe terminate

* try pipe

* passed test

* fix ch

* add comments

* fix len(texts)

* add comment

* add comment

* fix: multiprocessing of pipe is not supported in 2

* test: use assert_docs_equal

* fix: is_python3 -> is_python2

* fix: change _pipe arg to use functools.partial

* test: add vector modification test

* test: add sample ner_pipe and user_data pipe

* add warnings test

* test: fix user warnings

* test: fix warnings capture

* fix: remove islice import

* test: remove warnings test

* test: add stream test

* test: rename

* fix: multiproc stream

* fix: stream pipe

* add comment

* mp.Pipe seems to be able to use with relative small data

* test: skip stream test in python2

* sort imports

* test: add reason to skiptest

* fix: use pipe for docs communucation

* add comments

* add comment
2019-10-08 12:20:55 +02:00
adrianeboyd
14841d0aa6 Fix PhraseMatcher callback and add tests (#4399)
* Fix callback lookup in PhraseMatcher (string key rather than hash key)
* Add callback tests for Matcher and PhraseMatcher
2019-10-08 12:07:02 +02:00
adrianeboyd
a3509f67d4 Extend unicode character block for Sinhala (#4378)
* Extend unicode character block for Sinhala

* Add sentencizer tests for more languages
2019-10-07 13:17:03 +02:00
adrianeboyd
cbc2cee2c8 Improve URL_PATTERN and handling in tokenizer (#4374)
* Move prefix and suffix detection for URL_PATTERN

Move prefix and suffix detection for `URL_PATTERN` into the tokenizer.
Remove associated lookahead and lookbehind from `URL_PATTERN`.

Fix tokenization for Hungarian given new modified handling of prefixes
and suffixes.

* Match a wider range of URI schemes
2019-10-05 13:00:09 +02:00
Ines Montani
fec9433044 Make PhraseMatcher.vocab consistent with Matcher.vocab (closes #4373) 2019-10-04 12:18:41 +02:00
Sofie Van Landeghem
4e7259c6cf Bugfix initializing DocBin with attributes (#4368)
* docbin init fix + documentation fix + unit tests

* newline

* try with zlib instead of gzip (python 2 incompatibilities)
2019-10-03 14:48:45 +02:00
Ben Taylor
1db79a33cb most_similar() return the k most similar vectors (#4364)
* most_similar return n-most similar vectors

* updated most_similar comment

* add bintay contributor agreement

* sign bintay contributor agreement

* fix most_similar documentation typo

* fixed error in prune_vectors

* updated prune_vectors test
2019-10-03 14:09:44 +02:00
Sofie Van Landeghem
9d3ce7cba2 Ensure training doesn't crash with empty batches (#4360)
* unit test for previously resolved unflatten issue

* prevent batch of empty docs to cause problems
2019-10-02 12:50:47 +02:00
Ines Montani
cf65a80f36 Refactor lemmatizer and data table integration (#4353)
* Move test

* Allow default in Lookups.get_table

* Start with blank tables in Lookups.from_bytes

* Refactor lemmatizer to hold instance of Lookups

* Get lookups table within the lemmatization methods to make sure it references the correct table (even if the table was replaced or modified, e.g. when loading a model from disk)
* Deprecate other arguments on Lemmatizer.__init__ and expect Lookups for consistency
* Remove old and unsupported Lemmatizer.load classmethod
* Refactor language-specific lemmatizers to inherit as much as possible from base class and override only what they need

* Update tests and docs

* Fix more tests

* Fix lemmatizer

* Upgrade pytest to try and fix weird CI errors

* Try pytest 4.6.5
2019-10-01 21:36:03 +02:00
Ines Montani
3297a19545 Warn in Tagger.begin_training if no lemma tables are available (#4351) 2019-10-01 15:13:55 +02:00
Ines Montani
e0cf4796a5 Move lookup tables out of the core library (#4346)
* Add default to util.get_entry_point

* Tidy up entry points

* Read lookups from entry points

* Remove lookup tables and related tests

* Add lookups install option

* Remove lemmatizer tests

* Remove logic to process language data files

* Update setup.cfg
2019-10-01 00:01:27 +02:00
Ines Montani
4f905ac9e6 Add test for ASCII filenames (#4345) 2019-09-30 18:45:30 +02:00
Ines Montani
f7d1736241 Skip duplicate spans in Doc.retokenize (#4339) 2019-09-30 12:43:48 +02:00
Ines Montani
0226b3bf0e Fix test imports 2019-09-29 17:34:56 +02:00
Ines Montani
3d8fd4b461 Revert #4334 2019-09-29 17:32:12 +02:00
Ines Montani
c9cd516d96 Move tests out of package (#4334)
* Move tests out of package

* Fix typo
2019-09-28 18:05:00 +02:00
Ines Montani
5fe61539c4 Fix unicode "e" in filename 2019-09-28 15:45:16 +02:00
Sofie Van Landeghem
22b9e12159 Ensure the NER remains consistent after resizing (#4330)
* test and fix for second bug of issue 4042

* fix for first bug in 4042

* crashing test for Issue 4313

* forgot one instance of resize

* remove prints

* undo uncomment

* delete test for 4313 (uses third party lib)

* add fix for Issue 4313

* unit test for 4313
2019-09-27 20:57:13 +02:00
Ines Montani
acd5bcb0b3 Tidy up fixtures 2019-09-27 17:57:59 +02:00
adrianeboyd
c23edf302b Replace PhraseMatcher with trie-based search (#4309)
* Replace PhraseMatcher with Aho-Corasick

Replace PhraseMatcher with the Aho-Corasick algorithm over numpy arrays
of the hash values for the relevant attribute. The implementation is
based on FlashText.

The speed should be similar to the previous PhraseMatcher. It is now
possible to easily remove match IDs and matches don't go missing with
large keyword lists / vocabularies.

Fixes #4308.

* Restore support for pickling

* Fix internal keyword add/remove for numpy arrays

* Add missing loop for match ID set in search loop

* Remove cruft in matching loop for partial matches

There was a bit of unnecessary code left over from FlashText in the
matching loop to handle partial token matches, which we don't have with
PhraseMatcher.

* Replace dict trie with MapStruct trie

* Fix how match ID hash is stored/added

* Update fix for match ID vocab

* Switch from map_get_unless_missing to map_get

* Switch from numpy array to Token.get_struct_attr

Access token attributes directly in Doc instead of making a copy of the
relevant values in a numpy array.

Add unsatisfactory warning for hash collision with reserved terminal
hash key. (Ideally it would change the reserved terminal hash and redo
the whole trie, but for now, I'm hoping there won't be collisions.)

* Restructure imports to export find_matches

* Implement full remove()

Remove unnecessary trie paths and free unused maps.

Parallel to Matcher, raise KeyError when attempting to remove a match ID
that has not been added.

* Store docs internally only as attr lists

* Reduces size for pickle

* Remove duplicate keywords store

Now that docs are stored as lists of attr hashes, there's no need to
have the duplicate _keywords store.
2019-09-27 16:22:34 +02:00
Ines Montani
52904b7270 Raise if on_match is not callable or None 2019-09-24 23:06:24 +02:00
Ines Montani
9bf69bfbb2 Remove test 2019-09-19 17:38:41 +02:00
Matthew Honnibal
46c02d25b1 Merge changes to test_ner 2019-09-18 21:41:24 +02:00
Sofie Van Landeghem
de5a9ecdf3 Distinction between outside, missing and blocked NER annotations (#4307)
* remove duplicate unit test

* unit test (currently failing) for issue 4267

* bugfix: ensure doc.ents preserves kb_id annotations

* fix in setting doc.ents with empty label

* rename

* test for presetting an entity to a certain type

* allow overwriting Outside + blocking presets

* fix actions when previous label needs to be kept

* fix default ent_iob in set entities

* cleaner solution with U- action

* remove debugging print statements

* unit tests with explicit transitions and is_valid testing

* remove U- from move_names explicitly

* remove unit tests with pre-trained models that don't work

* remove (working) unit tests with pre-trained models

* clean up unit tests

* move unit tests

* small fixes

* remove two TODO's from doc.ents comments
2019-09-18 21:37:17 +02:00
tamuhey
875f3e5d8c remove redundant __call__ method in pipes.TextCategorizer (#4305)
* remove redundant __call__ method in pipes.TextCategorizer

Because the parent __call__ method behaves in the same way.

* fix: Pipe.__call__ arg

* fix: invalid arg in Pipe.__call__

* modified:   spacy/tests/regression/test_issue4278.py (#4278)

* deleted:    Pipfile
2019-09-18 21:31:27 +02:00
Ines Montani
00a8cbc306 Tidy up and auto-format 2019-09-18 20:27:03 +02:00
Ines Montani
f2c8b1e362 Simplify lookup hashing
Just use get_string_id, which already does everything ensure_hash was supposed to do
2019-09-18 20:24:41 +02:00
Matthew Honnibal
84c65f9455 Merge branch 'master' into develop 2019-09-16 22:12:20 +02:00
Sofie Van Landeghem
03ac29f437 Ensure that doc.ents preserves kb_id annotations (#4294)
* bugfix: ensure doc.ents preserves kb_id annotations

* fix backward compatibility

* additional test
2019-09-16 15:18:37 +02:00
Ines Montani
139428c20f Set unique vector names in tests 2019-09-16 15:16:54 +02:00
adrianeboyd
b5d999e510 Add textcat to train CLI (#4226)
* Add doc.cats to spacy.gold at the paragraph level

Support `doc.cats` as `"cats": [{"label": string, "value": number}]` in
the spacy JSON training format at the paragraph level.

* `spacy.gold.docs_to_json()` writes `docs.cats`

* `GoldCorpus` reads in cats in each `GoldParse`

* Update instances of gold_tuples to handle cats

Update iteration over gold_tuples / gold_parses to handle addition of
cats at the paragraph level.

* Add textcat to train CLI

* Add textcat options to train CLI
* Add textcat labels in `TextCategorizer.begin_training()`
* Add textcat evaluation to `Scorer`:
  * For binary exclusive classes with provided label: F1 for label
  * For 2+ exclusive classes: F1 macro average
  * For multilabel (not exclusive): ROC AUC macro average (currently
relying on sklearn)
* Provide user info on textcat evaluation settings, potential
incompatibilities
* Provide pipeline to Scorer in `Language.evaluate` for textcat config
* Customize train CLI output to include only metrics relevant to current
pipeline
* Add textcat evaluation to evaluate CLI

* Fix handling of unset arguments and config params

Fix handling of unset arguments and model confiug parameters in Scorer
initialization.

* Temporarily add sklearn requirement

* Remove sklearn version number

* Improve Scorer handling of models without textcats

* Fixing Scorer handling of models without textcats

* Update Scorer output for python 2.7

* Modify inf in Scorer for python 2.7

* Auto-format

Also make small adjustments to make auto-formatting with black easier and produce nicer results

* Move error message to Errors

* Update documentation

* Add cats to annotation JSON format [ci skip]

* Fix tpl flag and docs [ci skip]

* Switch to internal roc_auc_score

Switch to internal `roc_auc_score()` adapted from scikit-learn.

* Add AUCROCScore tests and improve errors/warnings

* Add tests for AUCROCScore and roc_auc_score
* Add missing error for only positive/negative values
* Remove unnecessary warnings and errors

* Make reduced roc_auc_score functions private

Because most of the checks and warnings have been stripped for the
internal functions and access is only intended through `ROCAUCScore`,
make the functions for roc_auc_score adapted from scikit-learn private.

* Check that data corresponds with multilabel flag

Check that the training instances correspond with the multilabel flag,
adding the multilabel flag if required.

* Add textcat score to early stopping check

* Add more checks to debug-data for textcat

* Add example training data for textcat

* Add more checks to textcat train CLI

* Check configuration when extending base model
* Fix typos

* Update textcat example data

* Provide licensing details and licenses for data
* Remove two labels with no positive instances from jigsaw-toxic-comment
data.


Co-authored-by: Ines Montani <ines@ines.io>
2019-09-15 22:31:31 +02:00
Ines Montani
bab9976d9a
💫 Adjust Table API and add docs (#4289)
* Adjust Table API and add docs

* Add attributes and update description [ci skip]

* Use strings.get_string_id instead of hash_string

* Fix table method calls

* Make orth arg in Lemmatizer.lookup optional

Fall back to string, which is now handled by Table.__contains__ out-of-the-box

* Fix method name

* Auto-format
2019-09-15 22:08:13 +02:00
Ines Montani
88a9d87f6f Fix test 2019-09-15 18:04:44 +02:00
Ines Montani
7194845234 Skip tests properly instead of xfailing them 2019-09-15 17:00:17 +02:00
Ines Montani
16c2522791 Merge branch 'master' into develop 2019-09-14 16:42:01 +02:00
adrianeboyd
6942a6a69b Extend default punct for sentencizer (#4290)
Most of these characters are for languages / writing systems that aren't
supported by spacy, but I don't think it causes problems to include
them. In the UD evals, Hindi and Urdu improve a lot as expected (from
0-10% to 70-80%) and Persian improves a little (90% to 96%). Tamil
improves in combination with #4288.

The punctuation list is converted to a set internally because of its
increased length.

Sentence final punctuation generated with:

```
unichars -gas '[\p{Sentence_Break=STerm}\p{Sentence_Break=ATerm}]' '\p{Terminal_Punctuation}'
```

See: https://stackoverflow.com/a/9508766/461847

Fixes #4269.
2019-09-14 15:25:48 +02:00
Ines Montani
3126dd0904 Tidy up and auto-format [ci skip] 2019-09-14 12:58:06 +02:00
Paul O'Leary McCann
29a9e636eb Fix half-width space handling in JA (#4284) (closes #4262)
Before this patch, half-width spaces between words were simply lost in
Japanese text. This wasn't immediately noticeable because much Japanese
text never uses spaces at all.
2019-09-13 16:28:12 +02:00
Ines Montani
3c3658ef9f Merge branch 'master' into develop 2019-09-12 18:03:01 +02:00
Paul O'Leary McCann
7d8df69158 Bloom-filter backed Lookup Tables (#4268)
* Improve load_language_data helper

* WIP: Add Lookups implementation

* Start moving lemma data over to JSON

* WIP: move data over for more languages

* Convert more languages

* Fix lemmatizer fixtures in tests

* Finish conversion

* Auto-format JSON files

* Fix test for now

* Make sure tables are stored on instance

* Update docstrings

* Update docstrings and errors

* Update test

* Add Lookups.__len__

* Add serialization methods

* Add Lookups.remove_table

* Use msgpack for serialization to disk

* Fix file exists check

* Try using OrderedDict for everything

* Update .flake8 [ci skip]

* Try fixing serialization

* Update test_lookups.py

* Update test_serialize_vocab_strings.py

* Lookups / Tables now work

This implements the stubs in the Lookups/Table classes. Currently this
is in Cython but with no type declarations, so that could be improved.

* Add lookups to setup.py

* Actually add lookups pyx

The previous commit added the old py file...

* Lookups work-in-progress

* Move from pyx back to py

* Add string based lookups, fix serialization

* Update tests, language/lemmatizer to work with string lookups

There are some outstanding issues here:

- a pickling-related test fails due to the bloom filter
- some custom lemmatizers (fr/nl at least) have issues

More generally, there's a question of how to deal with the case where
you have a string but want to use the lookup table. Currently the table
allows access by string or id, but that's getting pretty awkward.

* Change lemmatizer lookup method to pass (orth, string)

* Fix token lookup

* Fix French lookup

* Fix lt lemmatizer test

* Fix Dutch lemmatizer

* Fix lemmatizer lookup test

This was using a normal dict instead of a Table, so checks for the
string instead of an integer key failed.

* Make uk/nl/ru lemmatizer lookup methods consistent

The mentioned tokenizers all have their own implementation of the
`lookup` method, which accesses a `Lookups` table. The way that was
called in `token.pyx` was changed so this should be updated to have the
same arguments as `lookup` in `lemmatizer.py` (specificially (orth/id,
string)).

Prior to this change tests weren't failing, but there would probably be
issues with normal use of a model. More tests should proably be added.

Additionally, the language-specific `lookup` implementations seem like
they might not be needed, since they handle things like lower-casing
that aren't actually language specific.

* Make recently added Greek method compatible

* Remove redundant class/method

Leftovers from a merge not cleaned up adequately.
2019-09-12 17:26:11 +02:00
Sofie Van Landeghem
9be4d1c105 Allow copying of user_data in as_doc (#4282)
* Allow copying the user_data with as_doc + unit test

* add option to docs

* add typing

* import fix

* workaround to avoid bool clashing ...

* bint instead of bool
2019-09-12 17:08:14 +02:00
Ines Montani
655b434553 Merge branch 'master' into develop 2019-09-12 11:39:18 +02:00
Ines Montani
ac0e27a825
💫 Add Language.pipe_labels (#4276)
* Add Language.pipe_labels

* Update spacy/language.py

Co-Authored-By: Matthew Honnibal <honnibal+gh@gmail.com>
2019-09-12 10:56:28 +02:00
tamuhey
71909cdf22 Fix iss4278 (#4279)
* fix: len(tuple) == 2

* (#4278) add fail test

* add contributor's aggreement
2019-09-12 10:44:49 +02:00
Ines Montani
8ebc3711dc Fix bug in Parser.labels and add test (#4275) 2019-09-11 18:29:35 +02:00
Ines Montani
af25323653 Tidy up and auto-format 2019-09-11 14:00:36 +02:00
Ines Montani
e82a8d0d7a Merge branch 'master' into develop 2019-09-11 11:52:38 +02:00
Ines Montani
8f9f48b04c Add GreekLemmatizer.lookup (resolves #4272) 2019-09-11 11:44:40 +02:00
Ines Montani
6279d74c65 Tidy up and auto-format 2019-09-11 11:38:22 +02:00
Matthew Honnibal
7b858ba606 Update from master 2019-09-10 20:14:08 +02:00
Ines Montani
669a7d37ce Exclude vocab when testing to_bytes 2019-09-10 19:45:16 +02:00
adrianeboyd
c32126359a Allow period as suffix following punctuation (#4248)
Addresses rare cases (such as `_MATH_.`, see #1061) where the final
period was not recognized as a suffix following punctuation.
2019-09-09 19:19:22 +02:00
Ines Montani
3e8f136ba7 💫 WIP: Basic lookup class scaffolding and JSON for all lemmatizer data (#4178)
* Improve load_language_data helper

* WIP: Add Lookups implementation

* Start moving lemma data over to JSON

* WIP: move data over for more languages

* Convert more languages

* Fix lemmatizer fixtures in tests

* Finish conversion

* Auto-format JSON files

* Fix test for now

* Make sure tables are stored on instance

* Update docstrings

* Update docstrings and errors

* Update test

* Add Lookups.__len__

* Add serialization methods

* Add Lookups.remove_table

* Use msgpack for serialization to disk

* Fix file exists check

* Try using OrderedDict for everything

* Update .flake8 [ci skip]

* Try fixing serialization

* Update test_lookups.py

* Update test_serialize_vocab_strings.py

* Fix serialization for lookups

* Fix lookups

* Fix lookups

* Fix lookups

* Try to fix serialization

* Try to fix serialization

* Try to fix serialization

* Try to fix serialization

* Give up on serialization test

* Xfail more serialization tests for 3.5

* Fix lookups for 2.7
2019-09-09 19:17:55 +02:00
adrianeboyd
3780e2ff50 Flush tokenizer cache when necessary (#4258)
Flush tokenizer cache when affixes, token_match, or special cases are
modified.

Fixes #4238, same issue as in #1250.
2019-09-08 20:52:46 +02:00
Matthew Honnibal
1a65c5b7af Update develop from master 2019-09-08 18:21:41 +02:00
Pavle Vidanović
d03401f532 Lemmatizer lookup dictionary for Serbian and basic tag set adde… (#4251)
* Serbian stopwords added. (cyrillic alphabet)

* spaCy Contribution agreement included.

* Test initialize updated

* Serbian language code update. --bugfix

* Tokenizer exceptions added. Init file updated.

* Norm exceptions and lexical attributes added.

* Examples added.

* Tests added.

* sr_lang examples update.

* Tokenizer exceptions updated. (Serbian)

* Lemmatizer created. Licence included.

* Test updated.

* Tag map basic added.

* tag_map.py file removed since it uses default spacy tags.
2019-09-08 14:19:15 +02:00
Ivan Šarić
b01025dd06 adds Croatian lemma_lookup.json, license file and corresponding tests (#4252) 2019-09-08 13:40:45 +02:00
adrianeboyd
aec755d3a3 Modify retokenizer to use span root attributes (#4219)
* Modify retokenizer to use span root attributes

* tag/pos/morph are set to root tag/pos/morph

* lemma and norm are reset and end up as orth (not ideal, but better
than orth of first token)

* Also handle individual merge case

* Add test

* Attempt to handle ent_iob and ent_type in merges

* Fix check for whether B-ENT should become I-ENT

* Move IOB consistency check to after attrs

Move all IOB consistency checks after attrs are set and simplify to
check entire document, modifying I to B at the beginning of the document
or if the entity type of the previous token isn't the same.

* Move IOB consistency check for single merge

Move IOB consistency check after the token array is compressed for the
single merge case.

* Update spacy/tokens/_retokenize.pyx

Co-Authored-By: Matthew Honnibal <honnibal+gh@gmail.com>

* Remove single vs. multiple merge distinction

Remove original single-instance `_merge()` and use `_bulk_merge()` (now
renamed `_merge()`) for all merges.

* Add out-of-bound check in previous entity check
2019-09-08 13:04:49 +02:00
Bae Yong-Ju
a55f5a744f Fix ValueError exception on empty Korean text. (#4245) 2019-09-06 10:29:40 +02:00
Adriane Boyd
0f28418446 Add regression test for #1061 back to test suite 2019-09-04 20:42:24 +02:00
Ines Montani
419ae59c79 Make flaky test test_issue_1971_4 more explicit 2019-08-31 14:08:05 +02:00
Ines Montani
cd90752193 Tidy up and auto-format [ci skip] 2019-08-31 13:39:06 +02:00
Matthew Honnibal
516650f58f
Merge pull request #4207 from svlandeg/bugfix/serialize-tok-exc
Bugfix for serializing tokenizer rules/exceptions
2019-08-30 11:04:58 +02:00
Matthew Honnibal
3c1c0ec18e Add tests for NER oracle with whitespace 2019-08-29 14:33:39 +02:00
adrianeboyd
82159b5c19 Updates/bugfixes for NER/IOB converters (#4186)
* Updates/bugfixes for NER/IOB converters

* Converter formats `ner` and `iob` use autodetect to choose a converter if
  possible

* `iob2json` is reverted to handle sentence-per-line data like
  `word1|pos1|ent1 word2|pos2|ent2`

  * Fix bug in `merge_sentences()` so the second sentence in each batch isn't
    skipped

* `conll_ner2json` is made more general so it can handle more formats with
  whitespace-separated columns

  * Supports all formats where the first column is the token and the final
    column is the IOB tag; if present, the second column is the POS tag

  * As in CoNLL 2003 NER, blank lines separate sentences, `-DOCSTART- -X- O O`
    separates documents

  * Add option for segmenting sentences (new flag `-s`)

  * Parser-based sentence segmentation with a provided model, otherwise with
    sentencizer (new option `-b` to specify model)

  * Can group sentences into documents with `n_sents` as long as sentence
    segmentation is available

  * Only applies automatic segmentation when there are no existing delimiters
    in the data

* Provide info about settings applied during conversion with warnings and
  suggestions if settings conflict or might not be not optimal.

* Add tests for common formats

* Add '(default)' back to docs for -c auto

* Add document count back to output

* Revert changes to converter output message

* Use explicit tabs in convert CLI test data

* Adjust/add messages for n_sents=1 default

* Add sample NER data to training examples

* Update README

* Add links in docs to example NER data

* Define msg within converters
2019-08-29 12:04:01 +02:00
adrianeboyd
5feb342f5e Add more token attributes to token pattern schema (#4210)
Add token attributes with tests to token pattern schema.
2019-08-29 12:02:26 +02:00
svlandeg
7bec0ebbcb failing unit test for Issue 4190 2019-08-28 14:16:34 +02:00
Matthew Honnibal
71c0321ecf Fix test 2019-08-25 22:03:37 +02:00
Matthew Honnibal
22250cf6b7 Make regression test less sensitive to tag-map stuff 2019-08-25 21:54:26 +02:00
Matthew Honnibal
c308cf3e3e
Merge branch 'master' into feature/lemmatizer 2019-08-25 13:52:27 +02:00
Matthew Honnibal
bb911e5f4e Fix #3830: 'subtok' label being added even if learn_tokens=False (#4188)
* Prevent subtok label if not learning tokens

The parser introduces the subtok label to mark tokens that should be
merged during post-processing. Previously this happened even if we did
not have the --learn-tokens flag set. This patch passes the config
through to the parser, to prevent the problem.

* Make merge_subtokens a parser post-process if learn_subtokens

* Fix train script

* Add test for 3830: subtok problem

* Fix handlign of non-subtok in parser training
2019-08-23 17:54:00 +02:00
Sofie Van Landeghem
c417c380e3 Matcher ID fixes (#4179)
* allow phrasematcher to link one match to multiple original patterns

* small fix for defining ent_id in the matcher (anti-ghost prevention)

* cleanup

* formatting
2019-08-22 17:17:07 +02:00
Ines Montani
5ca7dd0f94
💫 WIP: Basic lookup class scaffolding and JSON for all lemmati… (#4167)
* Improve load_language_data helper

* WIP: Add Lookups implementation

* Start moving lemma data over to JSON

* WIP: move data over for more languages

* Convert more languages

* Fix lemmatizer fixtures in tests

* Finish conversion

* Auto-format JSON files

* Fix test for now

* Make sure tables are stored on instance
2019-08-22 14:21:32 +02:00
Pavle Vidanović
60e10a9f93 Serbian language improvement (#4169)
* Serbian stopwords added. (cyrillic alphabet)

* spaCy Contribution agreement included.

* Test initialize updated

* Serbian language code update. --bugfix

* Tokenizer exceptions added. Init file updated.

* Norm exceptions and lexical attributes added.

* Examples added.

* Tests added.

* sr_lang examples update.

* Tokenizer exceptions updated. (Serbian)
2019-08-22 11:43:07 +02:00
Sofie Van Landeghem
de272f8b82 adding double match for optional operator at the end (#4166) 2019-08-21 22:46:56 +02:00
Sofie Van Landeghem
01c5980187 Serialize POS attribute when doc.is_tagged (#4092)
* fix and unit test for issue 3959

* additional unit test for manifestation of the same (resolved) bug
2019-08-21 21:59:30 +02:00
Sofie Van Landeghem
7539a4f3a8 use states[q] in while retry loop (#4162) 2019-08-21 21:58:04 +02:00
adrianeboyd
2d17b047e2 Check for is_tagged/is_parsed for Matcher attrs (#4163)
Check for relevant components in the pipeline when Matcher is called,
similar to the checks for PhraseMatcher in #4105.

* keep track of attributes seen in patterns

* when Matcher is called on a Doc, check for is_tagged for LEMMA, TAG,
POS and for is_parsed for DEP
2019-08-21 20:52:36 +02:00
Pavle Vidanović
4fe9329bfb Serbian language code update "rs" -> "sr" (#4159)
* Serbian stopwords added. (cyrillic alphabet)

* spaCy Contribution agreement included.

* Test initialize updated

* Serbian language code update. --bugfix
2019-08-21 19:57:37 +02:00
Matthew Honnibal
bcd08f20af Merge changes from master 2019-08-21 14:18:52 +02:00