Commit Graph

9415 Commits

Author SHA1 Message Date
Sofie Van Landeghem
f293386d3e
remove unnecessary line
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2023-07-20 14:08:29 +02:00
Adriane Boyd
4f37e4031c
Update spacy/ml/tb_framework.pyx
Co-authored-by: Raphael Mitsch <r.mitsch@outlook.com>
2023-07-20 09:59:19 +02:00
svlandeg
96f2e30c4b cython fixes and cleanup 2023-07-19 17:41:29 +02:00
svlandeg
846472129c merge fixes (2) 2023-07-19 16:38:37 +02:00
svlandeg
47a82c6164 merge fixes 2023-07-19 16:38:29 +02:00
svlandeg
0e3b6a87d6 Merge branch 'upstream_master' into sync_v4 2023-07-19 16:37:31 +02:00
Basile Dura
b0228d8ea6
ci: add cython linter (#12694)
* chore: add cython-linter dev dependency

* fix: lexeme.pyx

* fix: morphology.pxd

* fix: tokenizer.pxd

* fix: vocab.pxd

* fix: morphology.pxd (line length)

* ci: add cython-lint

* ci: fix cython-lint call

* Fix kb/candidate.pyx.

* Fix kb/kb.pyx.

* Fix kb/kb_in_memory.pyx.

* Fix kb.

* Fix training/ partially.

* Fix training/. Ignore trailing whitespaces and too long lines.

* Fix ml/.

* Fix matcher/.

* Fix pipeline/.

* Fix tokens/.

* Fix build errors. Fix vocab.pyx.

* Fix cython-lint install and run.

* Fix lexeme.pyx, parts_of_speech.pxd, vectors.pyx. Temporarily disable cython-lint execution.

* Fix attrs.pyx, lexeme.pyx, symbols.pxd, isort issues.

* Make cython-lint install conditional. Fix tokenizer.pyx.

* Fix remaining files. Reenable cython-lint check.

* Readded parentheses.

* Fix test_build_dependencies().

* Add explanatory comment to cython-lint execution.

---------

Co-authored-by: Raphael Mitsch <r.mitsch@outlook.com>
2023-07-19 12:03:31 +02:00
Adriane Boyd
1509c96694
Clean up unused code in Language (#12836)
Follow-up to #12701.
2023-07-18 14:10:30 +02:00
Adriane Boyd
6bf7c65329
Update matcher pattern validation tests (#12835)
- parametrize over individual token patterns (as originally intended, as
far as I can tell)
- add a test for lowercase `in` in patterns
2023-07-18 10:00:07 +02:00
Ian Thompson
ef20e114e0
Typo fix in Language.replace_listeners docs (#12823)
* modified:   spacy/language.py
	- corrected typo in docstring for :method:`Language.replace_listeners`
	- added noqa comment on unused local variable assignment in :method:`Language.from_config` as I wasn't sure if it should be unassigned

modified:   website/docs/api/language.mdx
	- corrected typo in `Language.replace_listeners` markdown

* modified:   spacy/language.py
	- removed noqa comment

---------

Co-authored-by: Ian Thompson <ian.thompson@hrblock.com>
2023-07-14 09:45:54 +02:00
Connor Brinton
0566c3a166
🐛 Escape annotated HTML tags in span renderer (#12817)
These changes add a missing call to `escape_html` in the displaCy span
renderer. Previously span-annotated tokens would be inserted into the
page markup without being escaped, resulting in potentially incorrect
rendering. When I encountered this issue, it resulted in some docs and
span underlines being superimposed on top of properly rendered docs and
span underlines near the beginning of the visualization (due to an
unescaped `<span>` tag).
2023-07-13 17:33:05 +02:00
svlandeg
d26e4e0849 Revert "feat: add example stubs (#12679)"
This reverts commit 30bb34533a.
2023-07-06 17:02:38 +02:00
Basile Dura
30bb34533a
feat: add example stubs (#12679)
* feat: add example stubs

* fix: add required annotations

* fix: mypy issues

* fix: use Py36-compatible Portocol

* Minor reformatting

---------

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: svlandeg <svlandeg@github.com>
2023-07-06 16:49:43 +02:00
Sofie Van Landeghem
536798f9e3
Disallow False for first/last arguments of add_pipe (#12793)
* Literal True for first/last options

* add test case

* update docs

* remove old redundant test case

* black formatting

* use Optional typing in docstrings

Co-authored-by: Raphael Mitsch <r.mitsch@outlook.com>

---------

Co-authored-by: Raphael Mitsch <r.mitsch@outlook.com>
2023-07-06 15:20:13 +02:00
Adriane Boyd
a1191146f5 Revert "Temporarily skip tests for compat table"
This reverts commit dd5e00c735.
2023-07-06 12:47:50 +02:00
Adriane Boyd
830dcca367
SpanFinder: set default max_length to 25 (#12791)
When the default `max_length` is not set and there are longer training
documents, it can be difficult to train and evaluate the span finder due
to memory limits and the time it takes to evaluate a huge number of
predicted spans.
2023-07-06 09:55:34 +02:00
Adriane Boyd
fb0da3e097
Support custom token/lexeme attribute for vectors (#12625)
* Support custom token/lexeme attribute for vectors

* Fix imports

* Back off to ORTH without Vectors.attr

* Fallback if vectors.attr doesn't exist

* Update docs
2023-06-28 09:43:14 +02:00
Adriane Boyd
337a360cc7
Use spans_ prefix for default span finder scores (#12753) 2023-06-27 19:32:17 +02:00
Adriane Boyd
65f6c9cd10
Support overriding registered functions in configs (#12623)
Support overriding registered functions in configs. Previously the registry name was parsed as a section name rather than as a registry name.
2023-06-27 17:36:33 +02:00
Adriane Boyd
c067b5264c
Address issues with source with component names and replacing listeners (#12701)
When sourcing a component, the object from the original pipeline is added to the new pipeline as the same object. This creates a situation where there are several attributes that cannot be in sync between the original pipeline and the new pipeline at the same time for this one object:

* component.name
* component.listener_map / component.listening_components for tok2vec and transformer

When running replace_listeners on a component, the config is not updated correctly if the state of the component is incorrect for the current pipeline (in particular changes that should be applied from model.attrs["replace_listener_cfg"] as used in spacy-transformers) due to the fact that:

* find_listeners relies on component.name to set the name in the listener_map
* replace_listeners relies on listener_map to determine how to modify the configs

In addition, there are several places where pipeline components are modified and the listener map and/or internal component names aren't currently updated.

In cases where there is a component shared by two pipelines that cannot be in sync, this PR chooses to prioritize the most recently modified or initialized pipeline. There is no actual solution with the current source behavior that will make both pipelines usable, so the current pipeline is updated whenever components are added/renamed/removed or the pipeline is initialized for training.
2023-06-27 10:47:07 +02:00
Daniël de Kok
8b2732e276 Fix training.callbacks <-> language import cycle 2023-06-26 12:43:45 +02:00
Daniël de Kok
122f3b32ad Fix span <-> underscore import cycle 2023-06-26 12:43:21 +02:00
Daniël de Kok
bf92ca4f10 Merge remote-tracking branch 'upstream/master' into v4-isort 2023-06-26 12:43:00 +02:00
Daniël de Kok
2468742cb8 isort all the things 2023-06-26 11:41:03 +02:00
Adriane Boyd
e1664217f5
Add spancat_singlelabel to debug data CLI (#12749) 2023-06-26 10:25:20 +02:00
Daniël de Kok
17c4a3d646
Set version to v4.0.0.dev1 (#12748) 2023-06-23 09:43:41 +02:00
Daniël de Kok
096794dd74 Account for differences between Span.sents in spaCy 3/4 2023-06-22 15:38:22 +02:00
Adriane Boyd
cb4fdc83e4
Merge pull request #12742 from adrianeboyd/chore/v3.6.0
Set version to v3.6.0
2023-06-21 15:34:28 +02:00
Adriane Boyd
34971bcbd1 Set version to v3.6.0 2023-06-21 12:59:36 +02:00
Adriane Boyd
dd5e00c735 Temporarily skip tests for compat table 2023-06-21 12:59:36 +02:00
Sofie Van Landeghem
d3ac8e897c
default value for phrasematcher in pyi (#12714) 2023-06-21 10:10:13 +02:00
Ziad Amerr
3125b97ace
Fixed e941 link rendering by removing the dot (#12735) 2023-06-19 13:31:08 +02:00
Daniël de Kok
e2b70df012
Configure isort to use the Black profile, recursively isort the spacy module (#12721)
* Use isort with Black profile

* isort all the things

* Fix import cycles as a result of import sorting

* Add DOCBIN_ALL_ATTRS type definition

* Add isort to requirements

* Remove isort from build dependencies check

* Typo
2023-06-14 17:48:41 +02:00
Daniël de Kok
4990cfefb4 spancat type fixes 2023-06-12 16:43:11 +02:00
Daniël de Kok
50c5e9a2dd Merge remote-tracking branch 'upstream/master' into sync-v4-master-20230612 2023-06-12 15:57:10 +02:00
Sofie Van Landeghem
d65e3c31a6
use system-independent commands (#12693) 2023-06-08 11:43:36 +02:00
Adriane Boyd
0f9d2b01fb
Set version v3.6.0.dev1 (#12703) 2023-06-07 16:23:14 +02:00
kadarakos
c003aac29a
SpanFinder into spaCy from experimental (#12507)
* span finder integrated into spacy from experimental

* black

* isort

* black

* default spankey constant

* black

* Update spacy/pipeline/spancat.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* rename

* rename

* max_length and min_length as Optional[int] and strict checking

* black

* mypy fix for integer type infinity

* revert line order

* implement all comparison operators for inf int

* avoid two for loops over all docs by not precomputing

* interleave thresholding with span creation

* black

* revert to not interleaving (relized its faster)

* black

* Update spacy/errors.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* update dosctring

* enforce that the gold and predicted documents have the same text

* new error for ensuring reference and predicted texts are the same

* remove todo

* adjust test

* black

* handle misaligned tokenization

* return correct variable

* failing overfit test

* only use a single spans_key like in spancat

* black

* remove debug lines

* typo

* remove comment

* remove near duplicate reduntant method

* use the 'spans_key' variable name everywhere

* Update spacy/pipeline/span_finder.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* flaky test fix suggestion, hand set bias terms

* only test suggester and test result exhaustively

* make it clear that the span_finder_suggester is more general (not specific to span_finder)

* Update spacy/tests/pipeline/test_span_finder.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Apply suggestions from code review

* remove question comment

* move preset_spans_suggester test to spancat tests

* Add docs and unify default configs for spancat and span finder

* Add `allow_overlap=True` to span finder scorer

* Fix offset bug in set_annotations

* Ignore labels in span finder scorer

* Format

* Add span_finder to quickstart template

* Move settings to self.cfg, store min/max unset as None

* Remove debugging

* Update docstrings and docs

* Update spacy/pipeline/span_finder.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Fix imports

---------

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2023-06-07 15:52:28 +02:00
Basile Dura
c3c064ace4
fix: InitializableComponent type hints (#12692)
* fix: InitializableComponent type hints

* fix: avoid circular dependency

* style: clean imports in language.py

* style: use relative imports

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* fix: apply black

---------

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2023-06-02 14:29:52 +02:00
Adriane Boyd
c4112a1da3
Require that all SpanGroup spans are from the current doc (#12569)
* Require that all SpanGroup spans are from the current doc

The restriction on only adding spans from the current doc were already
implemented for all operations except for `SpanGroup.__init__`.

Initialize copied spans for `SpanGroup.copy` with `Doc.char_span` in
order to validate the character offsets and to make it possible to copy
spans between documents with differing tokenization. Currently there is
no validation that the document texts are identical, but the span char
offsets must be valid spans in the target doc, which prevents you from
ending up with completely invalid spans.

* Undo change in test_beam_overfitting_IO
2023-06-01 19:19:17 +02:00
Adriane Boyd
c936db2faf
Address numpy 1.25 deprecations in test suite (#12684)
* Address upcoming numpy v1.25 deprecations in test suite

* Temporarily test most recent numpy prerelease in CI

* Revert "Temporarily test most recent numpy prerelease in CI"

This reverts commit d75a66e55e.
2023-05-31 17:23:07 +02:00
Basile Dura
6ea4155487
feat: add comparison operators in span.pyi (#12652)
* feat: add comparison operators in span.pyi

remove Cython-specific `__richcmp__`

* fix: comparison operators should be defined for any other object
2023-05-23 08:50:37 +02:00
Basile Dura
95fd46b1dd
feat: add type hinting on SpanGroup.__iter__ (#12642) 2023-05-17 14:20:00 +02:00
Sani
873c16a4df
Malay language support (#12602)
* add malay lang

* fix token len

* black format

* reformat conftest malay

* remove exceptions not exist in dbp

* format code
2023-05-17 12:45:21 +02:00
Adriane Boyd
3637148c4d
Add scorer option to return per-component scores (#12540)
* Add scorer option to return per-component scores

Add `per_component` option to `Language.evaluate` and `Scorer.score` to
return scores keyed by `tokenizer` (hard-coded) or by component name.

Add option to `evaluate` CLI to score by component. Per-component scores
can only be saved to JSON.

* Update help text and messages
2023-05-12 15:36:54 +02:00
Adriane Boyd
b5af0fe836
Revert "Use Latin normalization for Serbian attrs (#12608)" (#12621)
This reverts commit 6f314f99c4.

We are reverting this until we can support this normalization more
consistently across vectors, training corpora, and lemmatizer data.
2023-05-11 11:54:16 +02:00
Adriane Boyd
1279b464bb
In initialize only calculate current vectors hash if needed (#12607) 2023-05-08 16:51:58 +02:00
Adriane Boyd
6f314f99c4
Use Latin normalization for Serbian attrs (#12608)
* Use Latin normalization for Serbian attrs

Use Latin normalization for Serbian `NORM`, `PREFIX`, and `SUFFIX`.

* Update NORMs in tokenizer exceptions and related tests

* Add tests for all custom lex attrs

* Remove unused imports
2023-05-08 12:33:56 +02:00
Adriane Boyd
fbd12eb4a4 Set version to v3.6.0.dev0 2023-05-08 09:10:35 +02:00
Adriane Boyd
dbc71ecd44
Remove #egg from download URLs (#12567)
The current URLs will become invalid in pip 25.0. According to the pip
docs, the egg= URLs are currently only needed for editable VCS installs.
2023-05-04 17:13:12 +02:00