WIP on removing goldparse
Get ArcEager compiling after GoldParse excise
Update setup.py
Get spacy.syntax compiling after removing GoldParse
Rename NewExample -> Example and clean up
Clean html files
Start updating tests
Update Morphologizer
* Move get_parses_from_example to spacy.syntax
* Get GoldParse out of Example
* Avoid expecting GoldParse input in parser
* Add Alignment to spacy.gold.align
* Update Example object
* Add comment
* Update pipeline
* Fix imports
* Simplify gold_io
* WIP on GoldCorpus
* Update test
* Xfail some gold tests
* Remove ignore_misaligned option from GoldCorpus
* Fix Example constructor
* Update test
* Fix usage of Example
* Add deprecated_get_gold method on Example
* Patch scorer
* Fix test
* Fix test
* Update tests
* Xfail a test
* Fix passing of make_projective
* Pass make_projective by default
* Hack data format in Example.from_dict
* Update tests
* Fix example.from_dict
* Update morphologizer
* Fix entity linker
* Add get_field to TokenAnnotation
* Fix Example.get_aligned
* Update test
* Fix alignment
* Fix corpus
* Fix GoldCorpus
* Handle misaligned
* Format
* Fix missing import
* Add pos and morph scoring to Scorer
Add pos, morph, and morph_per_type to `Scorer`. Report pos and morph
accuracy in `spacy evaluate`.
* Update morphologizer for v3
* switch to tagger-based morphologizer
* use `spacy.HashCharEmbedCNN` for morphologizer defaults
* add `Doc.is_morphed` flag
* Add morphologizer to train CLI
* Add basic morphologizer pipeline tests
* Add simple morphologizer training example
* Remove subword_features from CharEmbed models
Remove `subword_features` argument from `spacy.HashCharEmbedCNN.v1` and
`spacy.HashCharEmbedBiLSTM.v1` since in these cases `subword_features`
is always `False`.
* Rename setting in morphologizer example
Use `with_pos_tags` instead of `without_pos_tags`.
* Fix kwargs for spacy.HashCharEmbedBiLSTM.v1
* Remove defaults for spacy.HashCharEmbedBiLSTM.v1
Remove default `nM/nC` for `spacy.HashCharEmbedBiLSTM.v1`.
* Set random seed for textcat overfitting test
* fix grad_clip naming
* cleaning up pretrained_vectors out of cfg
* further refactoring Model init's
* move Model building out of pipes
* further refactor to require a model config when creating a pipe
* small fixes
* making cfg in nn_parser more consistent
* fixing nr_class for parser
* fixing nn_parser's nO
* fix printing of loss
* architectures in own file per type, consistent naming
* convenience methods default_tagger_config and default_tok2vec_config
* let create_pipe access default config if available for that component
* default_parser_config
* move defaults to separate folder
* allow reading nlp from package or dir with argument 'name'
* architecture spacy.VocabVectors.v1 to read static vectors from file
* cleanup
* default configs for nel, textcat, morphologizer, tensorizer
* fix imports
* fixing unit tests
* fixes and clean up
* fixing defaults, nO, fix unit tests
* restore parser IO
* fix IO
* 'fix' serialization test
* add *.cfg to manifest
* fix example configs with additional arguments
* replace Morpohologizer with Tagger
* add IO bit when testing overfitting of tagger (currently failing)
* fix IO - don't initialize when reading from disk
* expand overfitting tests to also check IO goes OK
* remove dropout from HashEmbed to fix Tagger performance
* add defaults for sentrec
* update thinc
* always pass a Model instance to a Pipe
* fix piped_added statement
* remove obsolete W029
* remove obsolete errors
* restore byte checking tests (work again)
* clean up test
* further test cleanup
* convert from config to Model in create_pipe
* bring back error when component is not initialized
* cleanup
* remove calls for nlp2.begin_training
* use thinc.api in imports
* allow setting charembed's nM and nC
* fix for hardcoded nM/nC + unit test
* formatting fixes
* trigger build
* Add load_from_config function
* Add train_from_config script
* Merge configs and expose via spacy.config
* Fix script
* Suggest create_evaluation_callback
* Hard-code for NER
* Fix errors
* Register command
* Add TODO
* Update train-from-config todos
* Fix imports
* Allow delayed setting of parser model nr_class
* Get train-from-config working
* Tidy up and fix scores and printing
* Hide traceback if cancelled
* Fix weighted score formatting
* Fix score formatting
* Make output_path optional
* Add Tok2Vec component
* Tidy up and add tok2vec_tensors
* Add option to copy docs in nlp.update
* Copy docs in nlp.update
* Adjust nlp.update() for set_annotations
* Don't shuffle pipes in nlp.update, decruft
* Support set_annotations arg in component update
* Support set_annotations in parser update
* Add get_gradients method
* Add get_gradients to parser
* Update errors.py
* Fix problems caused by merge
* Add _link_components method in nlp
* Add concept of 'listeners' and ControlledModel
* Support optional attributes arg in ControlledModel
* Try having tok2vec component in pipeline
* Fix tok2vec component
* Fix config
* Fix tok2vec
* Update for Example
* Update for Example
* Update config
* Add eg2doc util
* Update and add schemas/types
* Update schemas
* Fix nlp.update
* Fix tagger
* Remove hacks from train-from-config
* Remove hard-coded config str
* Calculate loss in tok2vec component
* Tidy up and use function signatures instead of models
* Support union types for registry models
* Minor cleaning in Language.update
* Make ControlledModel specifically Tok2VecListener
* Fix train_from_config
* Fix tok2vec
* Tidy up
* Add function for bilstm tok2vec
* Fix type
* Fix syntax
* Fix pytorch optimizer
* Add example configs
* Update for thinc describe changes
* Update for Thinc changes
* Update for dropout/sgd changes
* Update for dropout/sgd changes
* Unhack gradient update
* Work on refactoring _ml
* Remove _ml.py module
* WIP upgrade cli scripts for thinc
* Move some _ml stuff to util
* Import link_vectors from util
* Update train_from_config
* Import from util
* Import from util
* Temporarily add ml.component_models module
* Move ml methods
* Move typedefs
* Update load vectors
* Update gitignore
* Move imports
* Add PrecomputableAffine
* Fix imports
* Fix imports
* Fix imports
* Fix missing imports
* Update CLI scripts
* Update spacy.language
* Add stubs for building the models
* Update model definition
* Update create_default_optimizer
* Fix import
* Fix comment
* Update imports in tests
* Update imports in spacy.cli
* Fix import
* fix obsolete thinc imports
* update srsly pin
* from thinc to ml_datasets for example data such as imdb
* update ml_datasets pin
* using STATE.vectors
* small fix
* fix Sentencizer.pipe
* black formatting
* rename Affine to Linear as in thinc
* set validate explicitely to True
* rename with_square_sequences to with_list2padded
* rename with_flatten to with_list2array
* chaining layernorm
* small fixes
* revert Optimizer import
* build_nel_encoder with new thinc style
* fixes using model's get and set methods
* Tok2Vec in component models, various fixes
* fix up legacy tok2vec code
* add model initialize calls
* add in build_tagger_model
* small fixes
* setting model dims
* fixes for ParserModel
* various small fixes
* initialize thinc Models
* fixes
* consistent naming of window_size
* fixes, removing set_dropout
* work around Iterable issue
* remove legacy tok2vec
* util fix
* fix forward function of tok2vec listener
* more fixes
* trying to fix PrecomputableAffine (not succesful yet)
* alloc instead of allocate
* add morphologizer
* rename residual
* rename fixes
* Fix predict function
* Update parser and parser model
* fixing few more tests
* Fix precomputable affine
* Update component model
* Update parser model
* Move backprop padding to own function, for test
* Update test
* Fix p. affine
* Update NEL
* build_bow_text_classifier and extract_ngrams
* Fix parser init
* Fix test add label
* add build_simple_cnn_text_classifier
* Fix parser init
* Set gpu off by default in example
* Fix tok2vec listener
* Fix parser model
* Small fixes
* small fix for PyTorchLSTM parameters
* revert my_compounding hack (iterable fixed now)
* fix biLSTM
* Fix uniqued
* PyTorchRNNWrapper fix
* small fixes
* use helper function to calculate cosine loss
* small fixes for build_simple_cnn_text_classifier
* putting dropout default at 0.0 to ensure the layer gets built
* using thinc util's set_dropout_rate
* moving layer normalization inside of maxout definition to optimize dropout
* temp debugging in NEL
* fixed NEL model by using init defaults !
* fixing after set_dropout_rate refactor
* proper fix
* fix test_update_doc after refactoring optimizers in thinc
* Add CharacterEmbed layer
* Construct tagger Model
* Add missing import
* Remove unused stuff
* Work on textcat
* fix test (again :)) after optimizer refactor
* fixes to allow reading Tagger from_disk without overwriting dimensions
* don't build the tok2vec prematuraly
* fix CharachterEmbed init
* CharacterEmbed fixes
* Fix CharacterEmbed architecture
* fix imports
* renames from latest thinc update
* one more rename
* add initialize calls where appropriate
* fix parser initialization
* Update Thinc version
* Fix errors, auto-format and tidy up imports
* Fix validation
* fix if bias is cupy array
* revert for now
* ensure it's a numpy array before running bp in ParserStepModel
* no reason to call require_gpu twice
* use CupyOps.to_numpy instead of cupy directly
* fix initialize of ParserModel
* remove unnecessary import
* fixes for CosineDistance
* fix device renaming
* use refactored loss functions (Thinc PR 251)
* overfitting test for tagger
* experimental settings for the tagger: avoid zero-init and subword normalization
* clean up tagger overfitting test
* use previous default value for nP
* remove toy config
* bringing layernorm back (had a bug - fixed in thinc)
* revert setting nP explicitly
* remove setting default in constructor
* restore values as they used to be
* add overfitting test for NER
* add overfitting test for dep parser
* add overfitting test for textcat
* fixing init for linear (previously affine)
* larger eps window for textcat
* ensure doc is not None
* Require newer thinc
* Make float check vaguer
* Slop the textcat overfit test more
* Fix textcat test
* Fix exclusive classes for textcat
* fix after renaming of alloc methods
* fixing renames and mandatory arguments (staticvectors WIP)
* upgrade to thinc==8.0.0.dev3
* refer to vocab.vectors directly instead of its name
* rename alpha to learn_rate
* adding hashembed and staticvectors dropout
* upgrade to thinc 8.0.0.dev4
* add name back to avoid warning W020
* thinc dev4
* update srsly
* using thinc 8.0.0a0 !
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
Co-authored-by: Ines Montani <ines@ines.io>
* OrigAnnot class instead of gold.orig_annot list of zipped tuples
* from_orig to replace from_annot_tuples
* rename to RawAnnot
* some unit tests for GoldParse creation and internal format
* removing orig_annot and switching to lists instead of tuple
* rewriting tuples to use RawAnnot (+ debug statements, WIP)
* fix pop() changing the data
* small fixes
* pop-append fixes
* return RawAnnot for existing GoldParse to have uniform interface
* clean up imports
* fix merge_sents
* add unit test for 4402 with new structure (not working yet)
* introduce DocAnnot
* typo fixes
* add unit test for merge_sents
* rename from_orig to from_raw
* fixing unit tests
* fix nn parser
* read_annots to produce text, doc_annot pairs
* _make_golds fix
* rename golds_to_gold_annots
* small fixes
* fix encoding
* have golds_to_gold_annots use DocAnnot
* missed a spot
* merge_sents as function in DocAnnot
* allow specifying only part of the token-level annotations
* refactor with Example class + underlying dicts
* pipeline components to work with Example objects (wip)
* input checking
* fix yielding
* fix calls to update
* small fixes
* fix scorer unit test with new format
* fix kwargs order
* fixes for ud and conllu scripts
* fix reading data for conllu script
* add in proper errors (not fixed numbering yet to avoid merge conflicts)
* fixing few more small bugs
* fix EL script
* Add work in progress
* Update analysis helpers and component decorator
* Fix porting of docstrings for Python 2
* Fix docstring stuff on Python 2
* Support meta factories when loading model
* Put auto pipeline analysis behind flag for now
* Analyse pipes on remove_pipe and replace_pipe
* Move analysis to root for now
Try to find a better place for it, but it needs to go for now to avoid circular imports
* Simplify decorator
Don't return a wrapped class and instead just write to the object
* Update existing components and factories
* Add condition in factory for classes vs. functions
* Add missing from_nlp classmethods
* Add "retokenizes" to printed overview
* Update assigns/requires declarations of builtins
* Only return data if no_print is enabled
* Use multiline table for overview
* Don't support Span
* Rewrite errors/warnings and move them to spacy.errors
