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efdbb722c5
* Store activations in Doc when `store_activations` is enabled This change adds the new `activations` attribute to `Doc`. This attribute can be used by trainable pipes to store their activations, probabilities, and guesses for downstream users. As an example, this change modifies the `tagger` and `senter` pipes to add an `store_activations` option. When this option is enabled, the probabilities and guesses are stored in `set_annotations`. * Change type of `store_activations` to `Union[bool, List[str]]` When the value is: - A bool: all activations are stored when set to `True`. - A List[str]: the activations named in the list are stored * Formatting fixes in Tagger * Support store_activations in spancat and morphologizer * Make Doc.activations type visible to MyPy * textcat/textcat_multilabel: add store_activations option * trainable_lemmatizer/entity_linker: add store_activations option * parser/ner: do not currently support returning activations * Extend tagger and senter tests So that they, like the other tests, also check that we get no activations if no activations were requested. * Document `Doc.activations` and `store_activations` in the relevant pipes * Start errors/warnings at higher numbers to avoid merge conflicts Between the master and v4 branches. * Add `store_activations` to docstrings. * Replace store_activations setter by set_store_activations method Setters that take a different type than what the getter returns are still problematic for MyPy. Replace the setter by a method, so that type inference works everywhere. * Use dict comprehension suggested by @svlandeg * Revert "Use dict comprehension suggested by @svlandeg" This reverts commit6e7b958f70
. * EntityLinker: add type annotations to _add_activations * _store_activations: make kwarg-only, remove doc_scores_lens arg * set_annotations: add type annotations * Apply suggestions from code review Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * TextCat.predict: return dict * Make the `TrainablePipe.store_activations` property a bool This means that we can also bring back `store_activations` setter. * Remove `TrainablePipe.activations` We do not need to enumerate the activations anymore since `store_activations` is `bool`. * Add type annotations for activations in predict/set_annotations * Rename `TrainablePipe.store_activations` to `save_activations` * Error E1400 is not used anymore This error was used when activations were still `Union[bool, List[str]]`. * Change wording in API docs after store -> save change * docs: tag (save_)activations as new in spaCy 4.0 * Fix copied line in morphologizer activations test * Don't train in any test_save_activations test * Rename activations - "probs" -> "probabilities" - "guesses" -> "label_ids", except in the edit tree lemmatizer, where "guesses" -> "tree_ids". * Remove unused W400 warning. This warning was used when we still allowed the user to specify which activations to save. * Formatting fixes Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Replace "kb_ids" by a constant * spancat: replace a cast by an assertion * Fix EOF spacing * Fix comments in test_save_activations tests * Do not set RNG seed in activation saving tests * Revert "spancat: replace a cast by an assertion" This reverts commit0bd5730d16
. Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
327 lines
13 KiB
Cython
327 lines
13 KiB
Cython
# cython: infer_types=True, profile=True, binding=True
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from typing import Callable, Dict, Iterable, List, Optional, Union
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import srsly
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from thinc.api import SequenceCategoricalCrossentropy, Model, Config
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from thinc.types import Floats2d, Ints1d
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from itertools import islice
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from ..tokens.doc cimport Doc
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from ..vocab cimport Vocab
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from ..morphology cimport Morphology
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from ..parts_of_speech import IDS as POS_IDS
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from ..symbols import POS
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from ..language import Language
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from ..errors import Errors
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from .pipe import deserialize_config
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from .tagger import ActivationsT, Tagger
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from .. import util
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from ..scorer import Scorer
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from ..training import validate_examples, validate_get_examples
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from ..util import registry
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# See #9050
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BACKWARD_OVERWRITE = True
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BACKWARD_EXTEND = False
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default_model_config = """
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[model]
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@architectures = "spacy.Tagger.v2"
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[model.tok2vec]
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@architectures = "spacy.Tok2Vec.v2"
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[model.tok2vec.embed]
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@architectures = "spacy.CharacterEmbed.v2"
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width = 128
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rows = 7000
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nM = 64
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nC = 8
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include_static_vectors = false
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[model.tok2vec.encode]
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@architectures = "spacy.MaxoutWindowEncoder.v2"
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width = 128
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depth = 4
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window_size = 1
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maxout_pieces = 3
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"""
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DEFAULT_MORPH_MODEL = Config().from_str(default_model_config)["model"]
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@Language.factory(
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"morphologizer",
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assigns=["token.morph", "token.pos"],
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default_config={
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"model": DEFAULT_MORPH_MODEL,
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"overwrite": True,
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"extend": False,
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"scorer": {"@scorers": "spacy.morphologizer_scorer.v1"},
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"save_activations": False,
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},
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default_score_weights={"pos_acc": 0.5, "morph_acc": 0.5, "morph_per_feat": None},
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)
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def make_morphologizer(
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nlp: Language,
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model: Model,
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name: str,
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overwrite: bool,
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extend: bool,
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scorer: Optional[Callable],
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save_activations: bool,
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):
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return Morphologizer(nlp.vocab, model, name, overwrite=overwrite, extend=extend, scorer=scorer,
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save_activations=save_activations)
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def morphologizer_score(examples, **kwargs):
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def morph_key_getter(token, attr):
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return getattr(token, attr).key
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results = {}
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results.update(Scorer.score_token_attr(examples, "pos", **kwargs))
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results.update(Scorer.score_token_attr(examples, "morph", getter=morph_key_getter, **kwargs))
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results.update(Scorer.score_token_attr_per_feat(examples,
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"morph", getter=morph_key_getter, **kwargs))
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return results
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@registry.scorers("spacy.morphologizer_scorer.v1")
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def make_morphologizer_scorer():
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return morphologizer_score
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class Morphologizer(Tagger):
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POS_FEAT = "POS"
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def __init__(
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self,
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vocab: Vocab,
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model: Model,
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name: str = "morphologizer",
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*,
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overwrite: bool = BACKWARD_OVERWRITE,
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extend: bool = BACKWARD_EXTEND,
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scorer: Optional[Callable] = morphologizer_score,
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save_activations: bool = False,
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):
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"""Initialize a morphologizer.
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vocab (Vocab): The shared vocabulary.
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model (thinc.api.Model): The Thinc Model powering the pipeline component.
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name (str): The component instance name, used to add entries to the
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losses during training.
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scorer (Optional[Callable]): The scoring method. Defaults to
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Scorer.score_token_attr for the attributes "pos" and "morph" and
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Scorer.score_token_attr_per_feat for the attribute "morph".
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save_activations (bool): save model activations in Doc when annotating.
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DOCS: https://spacy.io/api/morphologizer#init
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"""
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self.vocab = vocab
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self.model = model
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self.name = name
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self._rehearsal_model = None
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# to be able to set annotations without string operations on labels,
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# store mappings from morph+POS labels to token-level annotations:
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# 1) labels_morph stores a mapping from morph+POS->morph
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# 2) labels_pos stores a mapping from morph+POS->POS
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cfg = {
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"labels_morph": {},
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"labels_pos": {},
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"overwrite": overwrite,
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"extend": extend,
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}
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self.cfg = dict(sorted(cfg.items()))
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self.scorer = scorer
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self.save_activations = save_activations
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@property
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def labels(self):
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"""RETURNS (Iterable[str]): The labels currently added to the component."""
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return self.cfg["labels_morph"].keys()
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@property
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def label_data(self) -> Dict[str, Dict[str, Union[str, float, int, None]]]:
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"""A dictionary with all labels data."""
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return {"morph": self.cfg["labels_morph"], "pos": self.cfg["labels_pos"]}
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def add_label(self, label):
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"""Add a new label to the pipe.
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label (str): The label to add.
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RETURNS (int): 0 if label is already present, otherwise 1.
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DOCS: https://spacy.io/api/morphologizer#add_label
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"""
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if not isinstance(label, str):
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raise ValueError(Errors.E187)
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if label in self.labels:
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return 0
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self._allow_extra_label()
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# normalize label
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norm_label = self.vocab.morphology.normalize_features(label)
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# extract separate POS and morph tags
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label_dict = Morphology.feats_to_dict(label, sort_values=False)
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pos = label_dict.get(self.POS_FEAT, "")
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if self.POS_FEAT in label_dict:
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label_dict.pop(self.POS_FEAT)
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# normalize morph string and add to morphology table
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norm_morph = self.vocab.strings[self.vocab.morphology.add(label_dict)]
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# add label mappings
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if norm_label not in self.cfg["labels_morph"]:
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self.cfg["labels_morph"][norm_label] = norm_morph
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self.cfg["labels_pos"][norm_label] = POS_IDS[pos]
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return 1
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def initialize(self, get_examples, *, nlp=None, labels=None):
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"""Initialize the pipe for training, using a representative set
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of data examples.
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get_examples (Callable[[], Iterable[Example]]): Function that
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returns a representative sample of gold-standard Example objects.
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nlp (Language): The current nlp object the component is part of.
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DOCS: https://spacy.io/api/morphologizer#initialize
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"""
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validate_get_examples(get_examples, "Morphologizer.initialize")
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util.check_lexeme_norms(self.vocab, "morphologizer")
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if labels is not None:
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self.cfg["labels_morph"] = labels["morph"]
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self.cfg["labels_pos"] = labels["pos"]
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else:
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# First, fetch all labels from the data
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for example in get_examples():
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for i, token in enumerate(example.reference):
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pos = token.pos_
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# if both are unset, annotation is missing, so do not add
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# an empty label
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if pos == "" and not token.has_morph():
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continue
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morph = str(token.morph)
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# create and add the combined morph+POS label
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morph_dict = Morphology.feats_to_dict(morph, sort_values=False)
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if pos:
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morph_dict[self.POS_FEAT] = pos
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norm_label = self.vocab.strings[self.vocab.morphology.add(morph_dict)]
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# add label->morph and label->POS mappings
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if norm_label not in self.cfg["labels_morph"]:
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self.cfg["labels_morph"][norm_label] = morph
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self.cfg["labels_pos"][norm_label] = POS_IDS[pos]
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if len(self.labels) < 1:
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raise ValueError(Errors.E143.format(name=self.name))
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doc_sample = []
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label_sample = []
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for example in islice(get_examples(), 10):
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gold_array = []
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for i, token in enumerate(example.reference):
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pos = token.pos_
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morph = str(token.morph)
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morph_dict = Morphology.feats_to_dict(morph, sort_values=False)
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if pos:
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morph_dict[self.POS_FEAT] = pos
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norm_label = self.vocab.strings[self.vocab.morphology.add(morph_dict)]
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gold_array.append([1.0 if label == norm_label else 0.0 for label in self.labels])
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doc_sample.append(example.x)
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label_sample.append(self.model.ops.asarray(gold_array, dtype="float32"))
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assert len(doc_sample) > 0, Errors.E923.format(name=self.name)
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assert len(label_sample) > 0, Errors.E923.format(name=self.name)
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self.model.initialize(X=doc_sample, Y=label_sample)
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def set_annotations(self, docs: Iterable[Doc], activations: ActivationsT):
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"""Modify a batch of documents, using pre-computed scores.
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docs (Iterable[Doc]): The documents to modify.
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activations (ActivationsT): The activations used for setting annotations, produced by Morphologizer.predict.
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DOCS: https://spacy.io/api/morphologizer#set_annotations
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"""
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batch_tag_ids = activations["label_ids"]
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if isinstance(docs, Doc):
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docs = [docs]
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cdef Doc doc
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cdef Vocab vocab = self.vocab
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cdef bint overwrite = self.cfg["overwrite"]
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cdef bint extend = self.cfg["extend"]
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# We require random access for the upcoming ops, so we need
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# to allocate a compatible container out of the iterable.
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labels = tuple(self.labels)
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for i, doc in enumerate(docs):
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if self.save_activations:
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doc.activations[self.name] = {}
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for act_name, acts in activations.items():
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doc.activations[self.name][act_name] = acts[i]
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doc_tag_ids = batch_tag_ids[i]
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if hasattr(doc_tag_ids, "get"):
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doc_tag_ids = doc_tag_ids.get()
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for j, tag_id in enumerate(doc_tag_ids):
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morph = labels[int(tag_id)]
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# set morph
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if doc.c[j].morph == 0 or overwrite or extend:
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if overwrite and extend:
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# morphologizer morph overwrites any existing features
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# while extending
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extended_morph = Morphology.feats_to_dict(self.vocab.strings[doc.c[j].morph], sort_values=False)
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extended_morph.update(Morphology.feats_to_dict(self.cfg["labels_morph"].get(morph, 0), sort_values=False))
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doc.c[j].morph = self.vocab.morphology.add(extended_morph)
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elif extend:
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# existing features are preserved and any new features
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# are added
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extended_morph = Morphology.feats_to_dict(self.cfg["labels_morph"].get(morph, 0), sort_values=False)
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extended_morph.update(Morphology.feats_to_dict(self.vocab.strings[doc.c[j].morph], sort_values=False))
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doc.c[j].morph = self.vocab.morphology.add(extended_morph)
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else:
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# clobber
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doc.c[j].morph = self.vocab.morphology.add(self.cfg["labels_morph"].get(morph, 0))
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# set POS
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if doc.c[j].pos == 0 or overwrite:
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doc.c[j].pos = self.cfg["labels_pos"].get(morph, 0)
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def get_loss(self, examples, scores):
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"""Find the loss and gradient of loss for the batch of documents and
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their predicted scores.
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examples (Iterable[Examples]): The batch of examples.
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scores: Scores representing the model's predictions.
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RETURNS (Tuple[float, float]): The loss and the gradient.
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DOCS: https://spacy.io/api/morphologizer#get_loss
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"""
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validate_examples(examples, "Morphologizer.get_loss")
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loss_func = SequenceCategoricalCrossentropy(names=tuple(self.labels), normalize=False)
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truths = []
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for eg in examples:
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eg_truths = []
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pos_tags = eg.get_aligned("POS", as_string=True)
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morphs = eg.get_aligned("MORPH", as_string=True)
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for i in range(len(morphs)):
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pos = pos_tags[i]
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morph = morphs[i]
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# POS may align (same value for multiple tokens) when morph
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# doesn't, so if either is misaligned (None), treat the
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# annotation as missing so that truths doesn't end up with an
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# unknown morph+POS combination
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if pos is None or morph is None:
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label = None
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# If both are unset, the annotation is missing (empty morph
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# converted from int is "_" rather than "")
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elif pos == "" and morph == "":
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label = None
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# Otherwise, generate the combined label
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else:
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label_dict = Morphology.feats_to_dict(morph, sort_values=False)
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if pos:
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label_dict[self.POS_FEAT] = pos
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label = self.vocab.strings[self.vocab.morphology.add(label_dict)]
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# As a fail-safe, skip any unrecognized labels
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if label not in self.labels:
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label = None
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eg_truths.append(label)
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truths.append(eg_truths)
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d_scores, loss = loss_func(scores, truths)
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if self.model.ops.xp.isnan(loss):
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raise ValueError(Errors.E910.format(name=self.name))
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return float(loss), d_scores
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