spaCy/spacy/pipeline/textcat_multilabel.py
Daniël de Kok efdbb722c5
Store activations in Docs when save_activations is enabled (#11002)
* Store activations in Doc when `store_activations` is enabled

This change adds the new `activations` attribute to `Doc`. This
attribute can be used by trainable pipes to store their activations,
probabilities, and guesses for downstream users.

As an example, this change modifies the `tagger` and `senter` pipes to
add an `store_activations` option. When this option is enabled, the
probabilities and guesses are stored in `set_annotations`.

* Change type of `store_activations` to `Union[bool, List[str]]`

When the value is:

- A bool: all activations are stored when set to `True`.
- A List[str]: the activations named in the list are stored

* Formatting fixes in Tagger

* Support store_activations in spancat and morphologizer

* Make Doc.activations type visible to MyPy

* textcat/textcat_multilabel: add store_activations option

* trainable_lemmatizer/entity_linker: add store_activations option

* parser/ner: do not currently support returning activations

* Extend tagger and senter tests

So that they, like the other tests, also check that we get no
activations if no activations were requested.

* Document `Doc.activations` and `store_activations` in the relevant pipes

* Start errors/warnings at higher numbers to avoid merge conflicts

Between the master and v4 branches.

* Add `store_activations` to docstrings.

* Replace store_activations setter by set_store_activations method

Setters that take a different type than what the getter returns are still
problematic for MyPy. Replace the setter by a method, so that type inference
works everywhere.

* Use dict comprehension suggested by @svlandeg

* Revert "Use dict comprehension suggested by @svlandeg"

This reverts commit 6e7b958f70.

* EntityLinker: add type annotations to _add_activations

* _store_activations: make kwarg-only, remove doc_scores_lens arg

* set_annotations: add type annotations

* Apply suggestions from code review

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* TextCat.predict: return dict

* Make the `TrainablePipe.store_activations` property a bool

This means that we can also bring back `store_activations` setter.

* Remove `TrainablePipe.activations`

We do not need to enumerate the activations anymore since `store_activations` is
`bool`.

* Add type annotations for activations in predict/set_annotations

* Rename `TrainablePipe.store_activations` to `save_activations`

* Error E1400 is not used anymore

This error was used when activations were still `Union[bool, List[str]]`.

* Change wording in API docs after store -> save change

* docs: tag (save_)activations as new in spaCy 4.0

* Fix copied line in morphologizer activations test

* Don't train in any test_save_activations test

* Rename activations

- "probs" -> "probabilities"
- "guesses" -> "label_ids", except in the edit tree lemmatizer, where
  "guesses" -> "tree_ids".

* Remove unused W400 warning.

This warning was used when we still allowed the user to specify
which activations to save.

* Formatting fixes

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Replace "kb_ids" by a constant

* spancat: replace a cast by an assertion

* Fix EOF spacing

* Fix comments in test_save_activations tests

* Do not set RNG seed in activation saving tests

* Revert "spancat: replace a cast by an assertion"

This reverts commit 0bd5730d16.

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-09-13 09:51:12 +02:00

214 lines
6.4 KiB
Python

from typing import Iterable, Optional, Dict, List, Callable, Any, Union
from thinc.types import Floats2d
from thinc.api import Model, Config
from itertools import islice
from ..language import Language
from ..training import Example, validate_get_examples
from ..errors import Errors
from ..scorer import Scorer
from ..tokens import Doc
from ..util import registry
from ..vocab import Vocab
from .textcat import TextCategorizer
multi_label_default_config = """
[model]
@architectures = "spacy.TextCatEnsemble.v2"
[model.tok2vec]
@architectures = "spacy.Tok2Vec.v1"
[model.tok2vec.embed]
@architectures = "spacy.MultiHashEmbed.v2"
width = 64
rows = [2000, 2000, 1000, 1000, 1000, 1000]
attrs = ["ORTH", "LOWER", "PREFIX", "SUFFIX", "SHAPE", "ID"]
include_static_vectors = false
[model.tok2vec.encode]
@architectures = "spacy.MaxoutWindowEncoder.v1"
width = ${model.tok2vec.embed.width}
window_size = 1
maxout_pieces = 3
depth = 2
[model.linear_model]
@architectures = "spacy.TextCatBOW.v2"
exclusive_classes = false
ngram_size = 1
no_output_layer = false
"""
DEFAULT_MULTI_TEXTCAT_MODEL = Config().from_str(multi_label_default_config)["model"]
multi_label_bow_config = """
[model]
@architectures = "spacy.TextCatBOW.v2"
exclusive_classes = false
ngram_size = 1
no_output_layer = false
"""
multi_label_cnn_config = """
[model]
@architectures = "spacy.TextCatCNN.v2"
exclusive_classes = false
[model.tok2vec]
@architectures = "spacy.HashEmbedCNN.v2"
pretrained_vectors = null
width = 96
depth = 4
embed_size = 2000
window_size = 1
maxout_pieces = 3
subword_features = true
"""
@Language.factory(
"textcat_multilabel",
assigns=["doc.cats"],
default_config={
"threshold": 0.5,
"model": DEFAULT_MULTI_TEXTCAT_MODEL,
"scorer": {"@scorers": "spacy.textcat_multilabel_scorer.v1"},
"save_activations": False,
},
default_score_weights={
"cats_score": 1.0,
"cats_score_desc": None,
"cats_micro_p": None,
"cats_micro_r": None,
"cats_micro_f": None,
"cats_macro_p": None,
"cats_macro_r": None,
"cats_macro_f": None,
"cats_macro_auc": None,
"cats_f_per_type": None,
"cats_macro_auc_per_type": None,
},
)
def make_multilabel_textcat(
nlp: Language,
name: str,
model: Model[List[Doc], List[Floats2d]],
threshold: float,
scorer: Optional[Callable],
save_activations: bool,
) -> "TextCategorizer":
"""Create a TextCategorizer component. The text categorizer predicts categories
over a whole document. It can learn one or more labels, and the labels are considered
to be non-mutually exclusive, which means that there can be zero or more labels
per doc).
model (Model[List[Doc], List[Floats2d]]): A model instance that predicts
scores for each category.
threshold (float): Cutoff to consider a prediction "positive".
"""
return MultiLabel_TextCategorizer(
nlp.vocab,
model,
name,
threshold=threshold,
scorer=scorer,
save_activations=save_activations,
)
def textcat_multilabel_score(examples: Iterable[Example], **kwargs) -> Dict[str, Any]:
return Scorer.score_cats(
examples,
"cats",
multi_label=True,
**kwargs,
)
@registry.scorers("spacy.textcat_multilabel_scorer.v1")
def make_textcat_multilabel_scorer():
return textcat_multilabel_score
class MultiLabel_TextCategorizer(TextCategorizer):
"""Pipeline component for multi-label text classification.
DOCS: https://spacy.io/api/textcategorizer
"""
def __init__(
self,
vocab: Vocab,
model: Model,
name: str = "textcat_multilabel",
*,
threshold: float,
scorer: Optional[Callable] = textcat_multilabel_score,
save_activations: bool = False,
) -> None:
"""Initialize a text categorizer for multi-label classification.
vocab (Vocab): The shared vocabulary.
model (thinc.api.Model): The Thinc Model powering the pipeline component.
name (str): The component instance name, used to add entries to the
losses during training.
threshold (float): Cutoff to consider a prediction "positive".
save_activations (bool): save model activations in Doc when annotating.
DOCS: https://spacy.io/api/textcategorizer#init
"""
self.vocab = vocab
self.model = model
self.name = name
self._rehearsal_model = None
cfg = {"labels": [], "threshold": threshold}
self.cfg = dict(cfg)
self.scorer = scorer
self.save_activations = save_activations
@property
def support_missing_values(self):
return True
def initialize( # type: ignore[override]
self,
get_examples: Callable[[], Iterable[Example]],
*,
nlp: Optional[Language] = None,
labels: Optional[Iterable[str]] = None,
):
"""Initialize the pipe for training, using a representative set
of data examples.
get_examples (Callable[[], Iterable[Example]]): Function that
returns a representative sample of gold-standard Example objects.
nlp (Language): The current nlp object the component is part of.
labels: The labels to add to the component, typically generated by the
`init labels` command. If no labels are provided, the get_examples
callback is used to extract the labels from the data.
DOCS: https://spacy.io/api/textcategorizer#initialize
"""
validate_get_examples(get_examples, "MultiLabel_TextCategorizer.initialize")
if labels is None:
for example in get_examples():
for cat in example.y.cats:
self.add_label(cat)
else:
for label in labels:
self.add_label(label)
subbatch = list(islice(get_examples(), 10))
doc_sample = [eg.reference for eg in subbatch]
label_sample, _ = self._examples_to_truth(subbatch)
self._require_labels()
assert len(doc_sample) > 0, Errors.E923.format(name=self.name)
assert len(label_sample) > 0, Errors.E923.format(name=self.name)
self.model.initialize(X=doc_sample, Y=label_sample)
def _validate_categories(self, examples: Iterable[Example]):
"""This component allows any type of single- or multi-label annotations.
This method overwrites the more strict one from 'textcat'."""
pass