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569cc98982
* Add load_from_config function * Add train_from_config script * Merge configs and expose via spacy.config * Fix script * Suggest create_evaluation_callback * Hard-code for NER * Fix errors * Register command * Add TODO * Update train-from-config todos * Fix imports * Allow delayed setting of parser model nr_class * Get train-from-config working * Tidy up and fix scores and printing * Hide traceback if cancelled * Fix weighted score formatting * Fix score formatting * Make output_path optional * Add Tok2Vec component * Tidy up and add tok2vec_tensors * Add option to copy docs in nlp.update * Copy docs in nlp.update * Adjust nlp.update() for set_annotations * Don't shuffle pipes in nlp.update, decruft * Support set_annotations arg in component update * Support set_annotations in parser update * Add get_gradients method * Add get_gradients to parser * Update errors.py * Fix problems caused by merge * Add _link_components method in nlp * Add concept of 'listeners' and ControlledModel * Support optional attributes arg in ControlledModel * Try having tok2vec component in pipeline * Fix tok2vec component * Fix config * Fix tok2vec * Update for Example * Update for Example * Update config * Add eg2doc util * Update and add schemas/types * Update schemas * Fix nlp.update * Fix tagger * Remove hacks from train-from-config * Remove hard-coded config str * Calculate loss in tok2vec component * Tidy up and use function signatures instead of models * Support union types for registry models * Minor cleaning in Language.update * Make ControlledModel specifically Tok2VecListener * Fix train_from_config * Fix tok2vec * Tidy up * Add function for bilstm tok2vec * Fix type * Fix syntax * Fix pytorch optimizer * Add example configs * Update for thinc describe changes * Update for Thinc changes * Update for dropout/sgd changes * Update for dropout/sgd changes * Unhack gradient update * Work on refactoring _ml * Remove _ml.py module * WIP upgrade cli scripts for thinc * Move some _ml stuff to util * Import link_vectors from util * Update train_from_config * Import from util * Import from util * Temporarily add ml.component_models module * Move ml methods * Move typedefs * Update load vectors * Update gitignore * Move imports * Add PrecomputableAffine * Fix imports * Fix imports * Fix imports * Fix missing imports * Update CLI scripts * Update spacy.language * Add stubs for building the models * Update model definition * Update create_default_optimizer * Fix import * Fix comment * Update imports in tests * Update imports in spacy.cli * Fix import * fix obsolete thinc imports * update srsly pin * from thinc to ml_datasets for example data such as imdb * update ml_datasets pin * using STATE.vectors * small fix * fix Sentencizer.pipe * black formatting * rename Affine to Linear as in thinc * set validate explicitely to True * rename with_square_sequences to with_list2padded * rename with_flatten to with_list2array * chaining layernorm * small fixes * revert Optimizer import * build_nel_encoder with new thinc style * fixes using model's get and set methods * Tok2Vec in component models, various fixes * fix up legacy tok2vec code * add model initialize calls * add in build_tagger_model * small fixes * setting model dims * fixes for ParserModel * various small fixes * initialize thinc Models * fixes * consistent naming of window_size * fixes, removing set_dropout * work around Iterable issue * remove legacy tok2vec * util fix * fix forward function of tok2vec listener * more fixes * trying to fix PrecomputableAffine (not succesful yet) * alloc instead of allocate * add morphologizer * rename residual * rename fixes * Fix predict function * Update parser and parser model * fixing few more tests * Fix precomputable affine * Update component model * Update parser model * Move backprop padding to own function, for test * Update test * Fix p. affine * Update NEL * build_bow_text_classifier and extract_ngrams * Fix parser init * Fix test add label * add build_simple_cnn_text_classifier * Fix parser init * Set gpu off by default in example * Fix tok2vec listener * Fix parser model * Small fixes * small fix for PyTorchLSTM parameters * revert my_compounding hack (iterable fixed now) * fix biLSTM * Fix uniqued * PyTorchRNNWrapper fix * small fixes * use helper function to calculate cosine loss * small fixes for build_simple_cnn_text_classifier * putting dropout default at 0.0 to ensure the layer gets built * using thinc util's set_dropout_rate * moving layer normalization inside of maxout definition to optimize dropout * temp debugging in NEL * fixed NEL model by using init defaults ! * fixing after set_dropout_rate refactor * proper fix * fix test_update_doc after refactoring optimizers in thinc * Add CharacterEmbed layer * Construct tagger Model * Add missing import * Remove unused stuff * Work on textcat * fix test (again :)) after optimizer refactor * fixes to allow reading Tagger from_disk without overwriting dimensions * don't build the tok2vec prematuraly * fix CharachterEmbed init * CharacterEmbed fixes * Fix CharacterEmbed architecture * fix imports * renames from latest thinc update * one more rename * add initialize calls where appropriate * fix parser initialization * Update Thinc version * Fix errors, auto-format and tidy up imports * Fix validation * fix if bias is cupy array * revert for now * ensure it's a numpy array before running bp in ParserStepModel * no reason to call require_gpu twice * use CupyOps.to_numpy instead of cupy directly * fix initialize of ParserModel * remove unnecessary import * fixes for CosineDistance * fix device renaming * use refactored loss functions (Thinc PR 251) * overfitting test for tagger * experimental settings for the tagger: avoid zero-init and subword normalization * clean up tagger overfitting test * use previous default value for nP * remove toy config * bringing layernorm back (had a bug - fixed in thinc) * revert setting nP explicitly * remove setting default in constructor * restore values as they used to be * add overfitting test for NER * add overfitting test for dep parser * add overfitting test for textcat * fixing init for linear (previously affine) * larger eps window for textcat * ensure doc is not None * Require newer thinc * Make float check vaguer * Slop the textcat overfit test more * Fix textcat test * Fix exclusive classes for textcat * fix after renaming of alloc methods * fixing renames and mandatory arguments (staticvectors WIP) * upgrade to thinc==8.0.0.dev3 * refer to vocab.vectors directly instead of its name * rename alpha to learn_rate * adding hashembed and staticvectors dropout * upgrade to thinc 8.0.0.dev4 * add name back to avoid warning W020 * thinc dev4 * update srsly * using thinc 8.0.0a0 ! Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com> Co-authored-by: Ines Montani <ines@ines.io> |
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.. | ||
__init__.py | ||
entity_linker_evaluation.py | ||
kb_creator.py | ||
README.md | ||
train_descriptions.py | ||
wiki_io.py | ||
wiki_namespaces.py | ||
wikidata_pretrain_kb.py | ||
wikidata_processor.py | ||
wikidata_train_entity_linker.py | ||
wikipedia_processor.py |
Entity Linking with Wikipedia and Wikidata
Step 1: Create a Knowledge Base (KB) and training data
Run wikipedia_pretrain_kb.py
- This takes as input the locations of a Wikipedia and a Wikidata dump, and produces a KB directory + training file
- WikiData: get
latest-all.json.bz2
from https://dumps.wikimedia.org/wikidatawiki/entities/ - Wikipedia: get
enwiki-latest-pages-articles-multistream.xml.bz2
from https://dumps.wikimedia.org/enwiki/latest/ (or for any other language)
- WikiData: get
- You can set the filtering parameters for KB construction:
max_per_alias
: (max) number of candidate entities in the KB per alias/synonymmin_freq
: threshold of number of times an entity should occur in the corpus to be included in the KBmin_pair
: threshold of number of times an entity+alias combination should occur in the corpus to be included in the KB
- Further parameters to set:
descriptions_from_wikipedia
: whether to parse descriptions from Wikipedia (True
) or Wikidata (False
)entity_vector_length
: length of the pre-trained entity description vectorslang
: language for which to fetch Wikidata information (as the dump contains all languages)
Quick testing and rerunning:
- When trying out the pipeline for a quick test, set
limit_prior
,limit_train
and/orlimit_wd
to read only parts of the dumps instead of everything. - If you only want to (re)run certain parts of the pipeline, just remove the corresponding files and they will be recalculated or reparsed.
Step 2: Train an Entity Linking model
Run wikidata_train_entity_linker.py
- This takes the KB directory produced by Step 1, and trains an Entity Linking model
- You can set the learning parameters for the EL training:
epochs
: number of training iterationsdropout
: dropout ratelr
: learning ratel2
: L2 regularization
- Specify the number of training and dev testing entities with
train_inst
anddev_inst
respectively - Further parameters to set:
labels_discard
: NER label types to discard during training