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			Markdown
		
	
	
	
	
	
			
		
		
	
	
			514 lines
		
	
	
		
			18 KiB
		
	
	
	
		
			Markdown
		
	
	
	
	
	
| ---
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| title: Layers and Model Architectures
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| teaser: Power spaCy components with custom neural networks
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| menu:
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|   - ['Type Signatures', 'type-sigs']
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|   - ['Swapping Architectures', 'swap-architectures']
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|   - ['PyTorch & TensorFlow', 'frameworks']
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|   - ['Custom Thinc Models', 'thinc']
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|   - ['Trainable Components', 'components']
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| next: /usage/projects
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| ---
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| 
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| > #### Example
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| >
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| > ```python
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| > from thinc.api import Model, chain
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| >
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| > @spacy.registry.architectures.register("model.v1")
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| > def build_model(width: int, classes: int) -> Model:
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| >     tok2vec = build_tok2vec(width)
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| >     output_layer = build_output_layer(width, classes)
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| >     model = chain(tok2vec, output_layer)
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| >     return model
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| > ```
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| 
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| A **model architecture** is a function that wires up a
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| [Thinc `Model`](https://thinc.ai/docs/api-model) instance. It describes the
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| neural network that is run internally as part of a component in a spaCy
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| pipeline. To define the actual architecture, you can implement your logic in
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| Thinc directly, or you can use Thinc as a thin wrapper around frameworks such as
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| PyTorch, TensorFlow and MXNet. Each `Model` can also be used as a sublayer of a
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| larger network, allowing you to freely combine implementations from different
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| frameworks into a single model.
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| 
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| spaCy's built-in components require a `Model` instance to be passed to them via
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| the config system. To change the model architecture of an existing component,
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| you just need to [**update the config**](#swap-architectures) so that it refers
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| to a different registered function. Once the component has been created from
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| this config, you won't be able to change it anymore. The architecture is like a
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| recipe for the network, and you can't change the recipe once the dish has
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| already been prepared. You have to make a new one.
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| 
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| ```ini
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| ### config.cfg (excerpt)
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| [components.tagger]
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| factory = "tagger"
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| 
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| [components.tagger.model]
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| @architectures = "model.v1"
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| width = 512
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| classes = 16
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| ```
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| 
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| ## Type signatures {#type-sigs}
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| 
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| > #### Example
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| >
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| > ```python
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| > from typing import List
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| > from thinc.api import Model, chain
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| > from thinc.types import Floats2d
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| > def chain_model(
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| >     tok2vec: Model[List[Doc], List[Floats2d]],
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| >     layer1: Model[List[Floats2d], Floats2d],
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| >     layer2: Model[Floats2d, Floats2d]
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| > ) -> Model[List[Doc], Floats2d]:
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| >     model = chain(tok2vec, layer1, layer2)
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| >     return model
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| > ```
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| 
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| The Thinc `Model` class is a **generic type** that can specify its input and
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| output types. Python uses a square-bracket notation for this, so the type
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| ~~Model[List, Dict]~~ says that each batch of inputs to the model will be a
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| list, and the outputs will be a dictionary. You can be even more specific and
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| write for instance~~Model[List[Doc], Dict[str, float]]~~ to specify that the
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| model expects a list of [`Doc`](/api/doc) objects as input, and returns a
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| dictionary mapping of strings to floats. Some of the most common types you'll
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| see are: 
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| 
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| | Type               | Description                                                                                          |
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| | ------------------ | ---------------------------------------------------------------------------------------------------- |
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| | ~~List[Doc]~~      | A batch of [`Doc`](/api/doc) objects. Most components expect their models to take this as input.     |
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| | ~~Floats2d~~       | A two-dimensional `numpy` or `cupy` array of floats. Usually 32-bit.                                 |
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| | ~~Ints2d~~         | A two-dimensional `numpy` or `cupy` array of integers. Common dtypes include uint64, int32 and int8. |
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| | ~~List[Floats2d]~~ | A list of two-dimensional arrays, generally with one array per `Doc` and one row per token.          |
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| | ~~Ragged~~         | A container to handle variable-length sequence data in an unpadded contiguous array.                 |
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| | ~~Padded~~         | A container to handle variable-length sequence data in a padded contiguous array.                    |
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| 
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| The model type signatures help you figure out which model architectures and
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| components can **fit together**. For instance, the
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| [`TextCategorizer`](/api/textcategorizer) class expects a model typed
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| ~~Model[List[Doc], Floats2d]~~, because the model will predict one row of
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| category probabilities per [`Doc`](/api/doc). In contrast, the
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| [`Tagger`](/api/tagger) class expects a model typed ~~Model[List[Doc],
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| List[Floats2d]]~~, because it needs to predict one row of probabilities per
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| token.
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| 
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| There's no guarantee that two models with the same type signature can be used
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| interchangeably. There are many other ways they could be incompatible. However,
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| if the types don't match, they almost surely _won't_ be compatible. This little
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| bit of validation goes a long way, especially if you
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| [configure your editor](https://thinc.ai/docs/usage-type-checking) or other
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| tools to highlight these errors early. The config file is also validated at the
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| beginning of training, to verify that all the types match correctly.
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| 
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| <Accordion title="Tip: Static type checking in your editor">
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| 
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| If you're using a modern editor like Visual Studio Code, you can
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| [set up `mypy`](https://thinc.ai/docs/usage-type-checking#install) with the
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| custom Thinc plugin and get live feedback about mismatched types as you write
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| code.
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| 
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| [](https://thinc.ai/docs/usage-type-checking#linting)
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| 
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| </Accordion>
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| 
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| ## Swapping model architectures {#swap-architectures}
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| 
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| If no model is specified for the [`TextCategorizer`](/api/textcategorizer), the
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| [TextCatEnsemble](/api/architectures#TextCatEnsemble) architecture is used by
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| default. This architecture combines a simple bag-of-words model with a neural
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| network, usually resulting in the most accurate results, but at the cost of
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| speed. The config file for this model would look something like this:
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| 
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| ```ini
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| ### config.cfg (excerpt)
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| [components.textcat]
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| factory = "textcat"
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| labels = []
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| 
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| [components.textcat.model]
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| @architectures = "spacy.TextCatEnsemble.v1"
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| exclusive_classes = false
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| pretrained_vectors = null
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| width = 64
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| conv_depth = 2
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| embed_size = 2000
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| window_size = 1
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| ngram_size = 1
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| dropout = 0
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| nO = null
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| ```
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| 
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| spaCy has two additional built-in `textcat` architectures, and you can easily
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| use those by swapping out the definition of the textcat's model. For instance,
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| to use the simple and fast bag-of-words model
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| [TextCatBOW](/api/architectures#TextCatBOW), you can change the config to:
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| 
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| ```ini
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| ### config.cfg (excerpt) {highlight="6-10"}
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| [components.textcat]
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| factory = "textcat"
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| labels = []
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| 
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| [components.textcat.model]
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| @architectures = "spacy.TextCatBOW.v1"
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| exclusive_classes = false
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| ngram_size = 1
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| no_output_layer = false
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| nO = null
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| ```
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| 
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| For details on all pre-defined architectures shipped with spaCy and how to
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| configure them, check out the [model architectures](/api/architectures)
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| documentation.
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| 
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| ### Defining sublayers {#sublayers}
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| 
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| Model architecture functions often accept **sublayers as arguments**, so that
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| you can try **substituting a different layer** into the network. Depending on
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| how the architecture function is structured, you might be able to define your
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| network structure entirely through the [config system](/usage/training#config),
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| using layers that have already been defined. 
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| 
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| In most neural network models for NLP, the most important parts of the network
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| are what we refer to as the
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| [embed and encode](https://explosion.ai/blog/deep-learning-formula-nlp) steps.
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| These steps together compute dense, context-sensitive representations of the
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| tokens, and their combination forms a typical
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| [`Tok2Vec`](/api/architectures#Tok2Vec) layer:
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| 
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| ```ini
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| ### config.cfg (excerpt)
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| [components.tok2vec]
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| factory = "tok2vec"
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| 
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| [components.tok2vec.model]
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| @architectures = "spacy.Tok2Vec.v1"
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| 
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| [components.tok2vec.model.embed]
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| @architectures = "spacy.MultiHashEmbed.v1"
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| # ...
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| 
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| [components.tok2vec.model.encode]
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| @architectures = "spacy.MaxoutWindowEncoder.v1"
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| # ...
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| ```
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| 
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| By defining these sublayers specifically, it becomes straightforward to swap out
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| a sublayer for another one, for instance changing the first sublayer to a
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| character embedding with the [CharacterEmbed](/api/architectures#CharacterEmbed)
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| architecture:
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| 
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| ```ini
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| ### config.cfg (excerpt)
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| [components.tok2vec.model.embed]
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| @architectures = "spacy.CharacterEmbed.v1"
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| # ...
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| 
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| [components.tok2vec.model.encode]
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| @architectures = "spacy.MaxoutWindowEncoder.v1"
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| # ...
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| ```
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| 
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| Most of spaCy's default architectures accept a `tok2vec` layer as a sublayer
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| within the larger task-specific neural network. This makes it easy to **switch
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| between** transformer, CNN, BiLSTM or other feature extraction approaches. The
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| [transformers documentation](/usage/embeddings-transformers#training-custom-model)
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| section shows an example of swapping out a model's standard `tok2vec` layer with
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| a transformer. And if you want to define your own solution, all you need to do
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| is register a ~~Model[List[Doc], List[Floats2d]]~~ architecture function, and
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| you'll be able to try it out in any of the spaCy components. 
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| 
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| ## Wrapping PyTorch, TensorFlow and other frameworks {#frameworks}
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| 
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| Thinc allows you to [wrap models](https://thinc.ai/docs/usage-frameworks)
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| written in other machine learning frameworks like PyTorch, TensorFlow and MXNet
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| using a unified [`Model`](https://thinc.ai/docs/api-model) API. This makes it
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| easy to use a model implemented in a different framework to power a component in
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| your spaCy pipeline. For example, to wrap a PyTorch model as a Thinc `Model`,
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| you can use Thinc's
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| [`PyTorchWrapper`](https://thinc.ai/docs/api-layers#pytorchwrapper):
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| 
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| ```python
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| from thinc.api import PyTorchWrapper
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| 
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| wrapped_pt_model = PyTorchWrapper(torch_model)
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| ```
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| 
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| Let's use PyTorch to define a very simple neural network consisting of two
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| hidden `Linear` layers with `ReLU` activation and dropout, and a
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| softmax-activated output layer:
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| 
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| ```python
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| ### PyTorch model
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| from torch import nn
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| 
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| torch_model = nn.Sequential(
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|     nn.Linear(width, hidden_width),
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|     nn.ReLU(),
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|     nn.Dropout2d(dropout),
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|     nn.Linear(hidden_width, nO),
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|     nn.ReLU(),
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|     nn.Dropout2d(dropout),
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|     nn.Softmax(dim=1)
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| )
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| ```
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| 
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| The resulting wrapped `Model` can be used as a **custom architecture** as such,
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| or can be a **subcomponent of a larger model**. For instance, we can use Thinc's
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| [`chain`](https://thinc.ai/docs/api-layers#chain) combinator, which works like
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| `Sequential` in PyTorch, to combine the wrapped model with other components in a
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| larger network. This effectively means that you can easily wrap different
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| components from different frameworks, and "glue" them together with Thinc:
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| 
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| ```python
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| from thinc.api import chain, with_array, PyTorchWrapper
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| from spacy.ml import CharacterEmbed
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| 
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| wrapped_pt_model = PyTorchWrapper(torch_model)
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| char_embed = CharacterEmbed(width, embed_size, nM, nC)
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| model = chain(char_embed, with_array(wrapped_pt_model))
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| ```
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| 
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| In the above example, we have combined our custom PyTorch model with a character
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| embedding layer defined by spaCy.
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| [CharacterEmbed](/api/architectures#CharacterEmbed) returns a `Model` that takes
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| a ~~List[Doc]~~ as input, and outputs a ~~List[Floats2d]~~. To make sure that
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| the wrapped PyTorch model receives valid inputs, we use Thinc's
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| [`with_array`](https://thinc.ai/docs/api-layers#with_array) helper.
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| 
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| You could also implement a model that only uses PyTorch for the transformer
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| layers, and "native" Thinc layers to do fiddly input and output transformations
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| and add on task-specific "heads", as efficiency is less of a consideration for
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| those parts of the network.
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| 
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| ### Using wrapped models {#frameworks-usage}
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| 
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| To use our custom model including the PyTorch subnetwork, all we need to do is
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| register the architecture using the
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| [`architectures` registry](/api/top-level#registry). This will assign the
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| architecture a name so spaCy knows how to find it, and allows passing in
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| arguments like hyperparameters via the [config](/usage/training#config). The
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| full example then becomes:
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| 
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| ```python
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| ### Registering the architecture {highlight="9"}
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| from typing import List
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| from thinc.types import Floats2d
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| from thinc.api import Model, PyTorchWrapper, chain, with_array
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| import spacy
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| from spacy.tokens.doc import Doc
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| from spacy.ml import CharacterEmbed
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| from torch import nn
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| 
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| @spacy.registry.architectures("CustomTorchModel.v1")
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| def create_torch_model(
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|     nO: int,
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|     width: int,
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|     hidden_width: int,
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|     embed_size: int,
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|     nM: int,
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|     nC: int,
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|     dropout: float,
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| ) -> Model[List[Doc], List[Floats2d]]:
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|     char_embed = CharacterEmbed(width, embed_size, nM, nC)
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|     torch_model = nn.Sequential(
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|         nn.Linear(width, hidden_width),
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|         nn.ReLU(),
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|         nn.Dropout2d(dropout),
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|         nn.Linear(hidden_width, nO),
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|         nn.ReLU(),
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|         nn.Dropout2d(dropout),
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|         nn.Softmax(dim=1)
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|     )
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|     wrapped_pt_model = PyTorchWrapper(torch_model)
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|     model = chain(char_embed, with_array(wrapped_pt_model))
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|     return model
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| ```
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| 
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| The model definition can now be used in any existing trainable spaCy component,
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| by specifying it in the config file. In this configuration, all required
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| parameters for the various subcomponents of the custom architecture are passed
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| in as settings via the config.
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| 
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| ```ini
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| ### config.cfg (excerpt) {highlight="5-5"}
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| [components.tagger]
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| factory = "tagger"
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| 
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| [components.tagger.model]
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| @architectures = "CustomTorchModel.v1"
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| nO = 50
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| width = 96
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| hidden_width = 48
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| embed_size = 2000
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| nM = 64
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| nC = 8
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| dropout = 0.2
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| ```
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| 
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| <Infobox variant="warning">
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| 
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| Remember that it is best not to rely on any (hidden) default values, to ensure
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| that training configs are complete and experiments fully reproducible.
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| 
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| </Infobox>
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| 
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| Note that when using a PyTorch or Tensorflow model, it is recommended to set the
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| GPU memory allocator accordingly. When `gpu_allocator` is set to "pytorch" or
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| "tensorflow" in the training config, cupy will allocate memory via those
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| respective libraries, preventing OOM errors when there's available memory
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| sitting in the other library's pool.
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| 
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| ```ini
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| ### config.cfg (excerpt)
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| [training]
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| gpu_allocator = "pytorch"
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| ```
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| 
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| ## Custom models with Thinc {#thinc}
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| 
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| Of course it's also possible to define the `Model` from the previous section
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| entirely in Thinc. The Thinc documentation provides details on the
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| [various layers](https://thinc.ai/docs/api-layers) and helper functions
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| available. Combinators can also be used to
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| [overload operators](https://thinc.ai/docs/usage-models#operators) and a common
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| usage pattern is to bind `chain` to `>>`. The "native" Thinc version of our
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| simple neural network would then become:
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| 
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| ```python
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| from thinc.api import chain, with_array, Model, Relu, Dropout, Softmax
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| from spacy.ml import CharacterEmbed
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| 
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| char_embed = CharacterEmbed(width, embed_size, nM, nC)
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| with Model.define_operators({">>": chain}):
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|     layers = (
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|         Relu(hidden_width, width)
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|         >> Dropout(dropout)
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|         >> Relu(hidden_width, hidden_width)
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|         >> Dropout(dropout)
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|         >> Softmax(nO, hidden_width)
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|     )
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|     model = char_embed >> with_array(layers)
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| ```
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| 
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| <Infobox variant="warning" title="Important note on inputs and outputs">
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| 
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| Note that Thinc layers define the output dimension (`nO`) as the first argument,
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| followed (optionally) by the input dimension (`nI`). This is in contrast to how
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| the PyTorch layers are defined, where `in_features` precedes `out_features`.
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| 
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| </Infobox>
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| 
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| ### Shape inference in Thinc {#thinc-shape-inference}
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| 
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| It is **not** strictly necessary to define all the input and output dimensions
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| for each layer, as Thinc can perform
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| [shape inference](https://thinc.ai/docs/usage-models#validation) between
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| sequential layers by matching up the output dimensionality of one layer to the
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| input dimensionality of the next. This means that we can simplify the `layers`
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| definition:
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| 
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| > #### Diff
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| >
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| > ```diff
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| > layers = (
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| >     Relu(hidden_width, width)
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| >     >> Dropout(dropout)
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| > -   >> Relu(hidden_width, hidden_width)
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| > +    >> Relu(hidden_width)
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| >     >> Dropout(dropout)
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| > -   >> Softmax(nO, hidden_width)
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| > +   >> Softmax(nO)
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| > )
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| > ```
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| 
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| ```python
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| with Model.define_operators({">>": chain}):
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|     layers = (
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|         Relu(hidden_width, width)
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|         >> Dropout(dropout)
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|         >> Relu(hidden_width)
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|         >> Dropout(dropout)
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|         >> Softmax(nO)
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|     )
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| ```
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| 
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| Thinc can even go one step further and **deduce the correct input dimension** of
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| the first layer, and output dimension of the last. To enable this functionality,
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| you have to call
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| [`Model.initialize`](https://thinc.ai/docs/api-model#initialize) with an **input
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| sample** `X` and an **output sample** `Y` with the correct dimensions:
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| 
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| ```python
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| ### Shape inference with initialization {highlight="3,7,10"}
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| with Model.define_operators({">>": chain}):
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|     layers = (
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|         Relu(hidden_width)
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|         >> Dropout(dropout)
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|         >> Relu(hidden_width)
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|         >> Dropout(dropout)
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|         >> Softmax()
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|     )
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|     model = char_embed >> with_array(layers)
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|     model.initialize(X=input_sample, Y=output_sample)
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| ```
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| 
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| The built-in [pipeline components](/usage/processing-pipelines) in spaCy ensure
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| that their internal models are **always initialized** with appropriate sample
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| data. In this case, `X` is typically a ~~List[Doc]~~, while `Y` is typically a
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| ~~List[Array1d]~~ or ~~List[Array2d]~~, depending on the specific task. This
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| functionality is triggered when [`nlp.initialize`](/api/language#initialize) is
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| called.
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| 
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| ### Dropout and normalization in Thinc {#thinc-dropout-norm}
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| 
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| Many of the available Thinc [layers](https://thinc.ai/docs/api-layers) allow you
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| to define a `dropout` argument that will result in "chaining" an additional
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| [`Dropout`](https://thinc.ai/docs/api-layers#dropout) layer. Optionally, you can
 | ||
| often specify whether or not you want to add layer normalization, which would
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| result in an additional
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| [`LayerNorm`](https://thinc.ai/docs/api-layers#layernorm) layer. That means that
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| the following `layers` definition is equivalent to the previous:
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| 
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| ```python
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| with Model.define_operators({">>": chain}):
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|     layers = (
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|         Relu(hidden_width, dropout=dropout, normalize=False)
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|         >> Relu(hidden_width, dropout=dropout, normalize=False)
 | ||
|         >> Softmax()
 | ||
|     )
 | ||
|     model = char_embed >> with_array(layers)
 | ||
|     model.initialize(X=input_sample, Y=output_sample)
 | ||
| ```
 | ||
| 
 | ||
| ## Create new trainable components {#components}
 | ||
| 
 | ||
| <Infobox title="This section is still under construction" emoji="🚧" variant="warning">
 | ||
| </Infobox>
 | ||
| 
 | ||
| <!-- TODO: write trainable component section
 | ||
| - Interaction with `predict`, `get_loss` and `set_annotations`
 | ||
| - Initialization life-cycle with `initialize`, correlation with add_label
 | ||
| Example: relation extraction component (implemented as project template)
 | ||
| Avoid duplication with usage/processing-pipelines#trainable-components ?
 | ||
| -->
 | ||
| 
 | ||
| <!-- 
 | ||
| 
 | ||
| ```python
 | ||
| def update(self, examples):
 | ||
|     docs = [ex.predicted for ex in examples]
 | ||
|     refs = [ex.reference for ex in examples]
 | ||
|     predictions, backprop = self.model.begin_update(docs)
 | ||
|     gradient = self.get_loss(predictions, refs)
 | ||
|     backprop(gradient)
 | ||
| 
 | ||
| def __call__(self, doc):
 | ||
|     predictions = self.model([doc])
 | ||
|     self.set_annotations(predictions)
 | ||
| ```
 | ||
| -->
 |