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514 lines
18 KiB
Markdown
514 lines
18 KiB
Markdown
---
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title: Layers and Model Architectures
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teaser: Power spaCy components with custom neural networks
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menu:
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- ['Type Signatures', 'type-sigs']
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- ['Swapping Architectures', 'swap-architectures']
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- ['PyTorch & TensorFlow', 'frameworks']
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- ['Custom Thinc Models', 'thinc']
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- ['Trainable Components', 'components']
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next: /usage/projects
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---
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> #### Example
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>
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> ```python
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> from thinc.api import Model, chain
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>
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> @spacy.registry.architectures.register("model.v1")
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> def build_model(width: int, classes: int) -> Model:
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> tok2vec = build_tok2vec(width)
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> output_layer = build_output_layer(width, classes)
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> model = chain(tok2vec, output_layer)
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> return model
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> ```
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A **model architecture** is a function that wires up a
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[Thinc `Model`](https://thinc.ai/docs/api-model) instance. It describes the
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neural network that is run internally as part of a component in a spaCy
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pipeline. To define the actual architecture, you can implement your logic in
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Thinc directly, or you can use Thinc as a thin wrapper around frameworks such as
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PyTorch, TensorFlow and MXNet. Each `Model` can also be used as a sublayer of a
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larger network, allowing you to freely combine implementations from different
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frameworks into a single model.
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spaCy's built-in components require a `Model` instance to be passed to them via
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the config system. To change the model architecture of an existing component,
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you just need to [**update the config**](#swap-architectures) so that it refers
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to a different registered function. Once the component has been created from
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this config, you won't be able to change it anymore. The architecture is like a
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recipe for the network, and you can't change the recipe once the dish has
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already been prepared. You have to make a new one.
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```ini
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### config.cfg (excerpt)
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[components.tagger]
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factory = "tagger"
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[components.tagger.model]
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@architectures = "model.v1"
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width = 512
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classes = 16
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```
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## Type signatures {#type-sigs}
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> #### Example
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>
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> ```python
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> from typing import List
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> from thinc.api import Model, chain
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> from thinc.types import Floats2d
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> def chain_model(
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> tok2vec: Model[List[Doc], List[Floats2d]],
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> layer1: Model[List[Floats2d], Floats2d],
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> layer2: Model[Floats2d, Floats2d]
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> ) -> Model[List[Doc], Floats2d]:
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> model = chain(tok2vec, layer1, layer2)
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> return model
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> ```
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The Thinc `Model` class is a **generic type** that can specify its input and
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output types. Python uses a square-bracket notation for this, so the type
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~~Model[List, Dict]~~ says that each batch of inputs to the model will be a
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list, and the outputs will be a dictionary. You can be even more specific and
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write for instance~~Model[List[Doc], Dict[str, float]]~~ to specify that the
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model expects a list of [`Doc`](/api/doc) objects as input, and returns a
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dictionary mapping of strings to floats. Some of the most common types you'll
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see are:
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| Type | Description |
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| ------------------ | ---------------------------------------------------------------------------------------------------- |
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| ~~List[Doc]~~ | A batch of [`Doc`](/api/doc) objects. Most components expect their models to take this as input. |
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| ~~Floats2d~~ | A two-dimensional `numpy` or `cupy` array of floats. Usually 32-bit. |
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| ~~Ints2d~~ | A two-dimensional `numpy` or `cupy` array of integers. Common dtypes include uint64, int32 and int8. |
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| ~~List[Floats2d]~~ | A list of two-dimensional arrays, generally with one array per `Doc` and one row per token. |
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| ~~Ragged~~ | A container to handle variable-length sequence data in an unpadded contiguous array. |
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| ~~Padded~~ | A container to handle variable-length sequence data in a padded contiguous array. |
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The model type signatures help you figure out which model architectures and
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components can **fit together**. For instance, the
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[`TextCategorizer`](/api/textcategorizer) class expects a model typed
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~~Model[List[Doc], Floats2d]~~, because the model will predict one row of
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category probabilities per [`Doc`](/api/doc). In contrast, the
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[`Tagger`](/api/tagger) class expects a model typed ~~Model[List[Doc],
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List[Floats2d]]~~, because it needs to predict one row of probabilities per
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token.
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There's no guarantee that two models with the same type signature can be used
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interchangeably. There are many other ways they could be incompatible. However,
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if the types don't match, they almost surely _won't_ be compatible. This little
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bit of validation goes a long way, especially if you
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[configure your editor](https://thinc.ai/docs/usage-type-checking) or other
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tools to highlight these errors early. The config file is also validated at the
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beginning of training, to verify that all the types match correctly.
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<Accordion title="Tip: Static type checking in your editor">
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If you're using a modern editor like Visual Studio Code, you can
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[set up `mypy`](https://thinc.ai/docs/usage-type-checking#install) with the
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custom Thinc plugin and get live feedback about mismatched types as you write
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code.
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[![](../images/thinc_mypy.jpg)](https://thinc.ai/docs/usage-type-checking#linting)
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</Accordion>
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## Swapping model architectures {#swap-architectures}
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If no model is specified for the [`TextCategorizer`](/api/textcategorizer), the
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[TextCatEnsemble](/api/architectures#TextCatEnsemble) architecture is used by
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default. This architecture combines a simple bag-of-words model with a neural
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network, usually resulting in the most accurate results, but at the cost of
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speed. The config file for this model would look something like this:
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```ini
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### config.cfg (excerpt)
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[components.textcat]
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factory = "textcat"
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labels = []
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[components.textcat.model]
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@architectures = "spacy.TextCatEnsemble.v1"
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exclusive_classes = false
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pretrained_vectors = null
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width = 64
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conv_depth = 2
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embed_size = 2000
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window_size = 1
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ngram_size = 1
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dropout = 0
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nO = null
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```
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spaCy has two additional built-in `textcat` architectures, and you can easily
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use those by swapping out the definition of the textcat's model. For instance,
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to use the simple and fast bag-of-words model
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[TextCatBOW](/api/architectures#TextCatBOW), you can change the config to:
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```ini
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### config.cfg (excerpt) {highlight="6-10"}
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[components.textcat]
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factory = "textcat"
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labels = []
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[components.textcat.model]
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@architectures = "spacy.TextCatBOW.v1"
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exclusive_classes = false
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ngram_size = 1
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no_output_layer = false
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nO = null
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```
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For details on all pre-defined architectures shipped with spaCy and how to
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configure them, check out the [model architectures](/api/architectures)
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documentation.
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### Defining sublayers {#sublayers}
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Model architecture functions often accept **sublayers as arguments**, so that
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you can try **substituting a different layer** into the network. Depending on
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how the architecture function is structured, you might be able to define your
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network structure entirely through the [config system](/usage/training#config),
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using layers that have already been defined.
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In most neural network models for NLP, the most important parts of the network
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are what we refer to as the
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[embed and encode](https://explosion.ai/blog/deep-learning-formula-nlp) steps.
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These steps together compute dense, context-sensitive representations of the
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tokens, and their combination forms a typical
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[`Tok2Vec`](/api/architectures#Tok2Vec) layer:
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```ini
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### config.cfg (excerpt)
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[components.tok2vec]
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factory = "tok2vec"
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[components.tok2vec.model]
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@architectures = "spacy.Tok2Vec.v1"
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[components.tok2vec.model.embed]
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@architectures = "spacy.MultiHashEmbed.v1"
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# ...
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[components.tok2vec.model.encode]
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@architectures = "spacy.MaxoutWindowEncoder.v1"
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# ...
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```
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By defining these sublayers specifically, it becomes straightforward to swap out
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a sublayer for another one, for instance changing the first sublayer to a
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character embedding with the [CharacterEmbed](/api/architectures#CharacterEmbed)
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architecture:
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```ini
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### config.cfg (excerpt)
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[components.tok2vec.model.embed]
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@architectures = "spacy.CharacterEmbed.v1"
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# ...
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[components.tok2vec.model.encode]
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@architectures = "spacy.MaxoutWindowEncoder.v1"
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# ...
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```
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Most of spaCy's default architectures accept a `tok2vec` layer as a sublayer
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within the larger task-specific neural network. This makes it easy to **switch
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between** transformer, CNN, BiLSTM or other feature extraction approaches. The
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[transformers documentation](/usage/embeddings-transformers#training-custom-model)
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section shows an example of swapping out a model's standard `tok2vec` layer with
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a transformer. And if you want to define your own solution, all you need to do
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is register a ~~Model[List[Doc], List[Floats2d]]~~ architecture function, and
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you'll be able to try it out in any of the spaCy components.
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## Wrapping PyTorch, TensorFlow and other frameworks {#frameworks}
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Thinc allows you to [wrap models](https://thinc.ai/docs/usage-frameworks)
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written in other machine learning frameworks like PyTorch, TensorFlow and MXNet
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using a unified [`Model`](https://thinc.ai/docs/api-model) API. This makes it
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easy to use a model implemented in a different framework to power a component in
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your spaCy pipeline. For example, to wrap a PyTorch model as a Thinc `Model`,
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you can use Thinc's
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[`PyTorchWrapper`](https://thinc.ai/docs/api-layers#pytorchwrapper):
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```python
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from thinc.api import PyTorchWrapper
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wrapped_pt_model = PyTorchWrapper(torch_model)
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```
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Let's use PyTorch to define a very simple neural network consisting of two
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hidden `Linear` layers with `ReLU` activation and dropout, and a
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softmax-activated output layer:
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```python
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### PyTorch model
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from torch import nn
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torch_model = nn.Sequential(
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nn.Linear(width, hidden_width),
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nn.ReLU(),
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nn.Dropout2d(dropout),
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nn.Linear(hidden_width, nO),
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nn.ReLU(),
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nn.Dropout2d(dropout),
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nn.Softmax(dim=1)
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)
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```
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The resulting wrapped `Model` can be used as a **custom architecture** as such,
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or can be a **subcomponent of a larger model**. For instance, we can use Thinc's
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[`chain`](https://thinc.ai/docs/api-layers#chain) combinator, which works like
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`Sequential` in PyTorch, to combine the wrapped model with other components in a
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larger network. This effectively means that you can easily wrap different
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components from different frameworks, and "glue" them together with Thinc:
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```python
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from thinc.api import chain, with_array, PyTorchWrapper
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from spacy.ml import CharacterEmbed
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wrapped_pt_model = PyTorchWrapper(torch_model)
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char_embed = CharacterEmbed(width, embed_size, nM, nC)
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model = chain(char_embed, with_array(wrapped_pt_model))
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```
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In the above example, we have combined our custom PyTorch model with a character
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embedding layer defined by spaCy.
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[CharacterEmbed](/api/architectures#CharacterEmbed) returns a `Model` that takes
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a ~~List[Doc]~~ as input, and outputs a ~~List[Floats2d]~~. To make sure that
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the wrapped PyTorch model receives valid inputs, we use Thinc's
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[`with_array`](https://thinc.ai/docs/api-layers#with_array) helper.
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You could also implement a model that only uses PyTorch for the transformer
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layers, and "native" Thinc layers to do fiddly input and output transformations
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and add on task-specific "heads", as efficiency is less of a consideration for
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those parts of the network.
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### Using wrapped models {#frameworks-usage}
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To use our custom model including the PyTorch subnetwork, all we need to do is
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register the architecture using the
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[`architectures` registry](/api/top-level#registry). This will assign the
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architecture a name so spaCy knows how to find it, and allows passing in
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arguments like hyperparameters via the [config](/usage/training#config). The
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full example then becomes:
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```python
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### Registering the architecture {highlight="9"}
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from typing import List
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from thinc.types import Floats2d
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from thinc.api import Model, PyTorchWrapper, chain, with_array
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import spacy
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from spacy.tokens.doc import Doc
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from spacy.ml import CharacterEmbed
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from torch import nn
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@spacy.registry.architectures("CustomTorchModel.v1")
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def create_torch_model(
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nO: int,
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width: int,
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hidden_width: int,
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embed_size: int,
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nM: int,
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nC: int,
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dropout: float,
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) -> Model[List[Doc], List[Floats2d]]:
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char_embed = CharacterEmbed(width, embed_size, nM, nC)
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torch_model = nn.Sequential(
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nn.Linear(width, hidden_width),
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nn.ReLU(),
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nn.Dropout2d(dropout),
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nn.Linear(hidden_width, nO),
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nn.ReLU(),
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nn.Dropout2d(dropout),
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nn.Softmax(dim=1)
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)
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wrapped_pt_model = PyTorchWrapper(torch_model)
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model = chain(char_embed, with_array(wrapped_pt_model))
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return model
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```
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The model definition can now be used in any existing trainable spaCy component,
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by specifying it in the config file. In this configuration, all required
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parameters for the various subcomponents of the custom architecture are passed
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in as settings via the config.
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```ini
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### config.cfg (excerpt) {highlight="5-5"}
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[components.tagger]
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factory = "tagger"
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[components.tagger.model]
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@architectures = "CustomTorchModel.v1"
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nO = 50
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width = 96
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hidden_width = 48
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embed_size = 2000
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nM = 64
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nC = 8
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dropout = 0.2
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```
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<Infobox variant="warning">
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Remember that it is best not to rely on any (hidden) default values, to ensure
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that training configs are complete and experiments fully reproducible.
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</Infobox>
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Note that when using a PyTorch or Tensorflow model, it is recommended to set the
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GPU memory allocator accordingly. When `gpu_allocator` is set to "pytorch" or
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"tensorflow" in the training config, cupy will allocate memory via those
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respective libraries, preventing OOM errors when there's available memory
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sitting in the other library's pool.
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```ini
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### config.cfg (excerpt)
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[training]
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gpu_allocator = "pytorch"
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```
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## Custom models with Thinc {#thinc}
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Of course it's also possible to define the `Model` from the previous section
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entirely in Thinc. The Thinc documentation provides details on the
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[various layers](https://thinc.ai/docs/api-layers) and helper functions
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available. Combinators can also be used to
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[overload operators](https://thinc.ai/docs/usage-models#operators) and a common
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usage pattern is to bind `chain` to `>>`. The "native" Thinc version of our
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simple neural network would then become:
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```python
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from thinc.api import chain, with_array, Model, Relu, Dropout, Softmax
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from spacy.ml import CharacterEmbed
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char_embed = CharacterEmbed(width, embed_size, nM, nC)
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with Model.define_operators({">>": chain}):
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layers = (
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Relu(hidden_width, width)
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>> Dropout(dropout)
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>> Relu(hidden_width, hidden_width)
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>> Dropout(dropout)
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>> Softmax(nO, hidden_width)
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)
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model = char_embed >> with_array(layers)
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```
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<Infobox variant="warning" title="Important note on inputs and outputs">
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Note that Thinc layers define the output dimension (`nO`) as the first argument,
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followed (optionally) by the input dimension (`nI`). This is in contrast to how
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the PyTorch layers are defined, where `in_features` precedes `out_features`.
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</Infobox>
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### Shape inference in Thinc {#thinc-shape-inference}
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It is **not** strictly necessary to define all the input and output dimensions
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for each layer, as Thinc can perform
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[shape inference](https://thinc.ai/docs/usage-models#validation) between
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sequential layers by matching up the output dimensionality of one layer to the
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input dimensionality of the next. This means that we can simplify the `layers`
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definition:
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> #### Diff
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>
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> ```diff
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> layers = (
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> Relu(hidden_width, width)
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> >> Dropout(dropout)
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> - >> Relu(hidden_width, hidden_width)
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> + >> Relu(hidden_width)
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> >> Dropout(dropout)
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> - >> Softmax(nO, hidden_width)
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> + >> Softmax(nO)
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> )
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> ```
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```python
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with Model.define_operators({">>": chain}):
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layers = (
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Relu(hidden_width, width)
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>> Dropout(dropout)
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>> Relu(hidden_width)
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>> Dropout(dropout)
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>> Softmax(nO)
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)
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```
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Thinc can even go one step further and **deduce the correct input dimension** of
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the first layer, and output dimension of the last. To enable this functionality,
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you have to call
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[`Model.initialize`](https://thinc.ai/docs/api-model#initialize) with an **input
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sample** `X` and an **output sample** `Y` with the correct dimensions:
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```python
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### Shape inference with initialization {highlight="3,7,10"}
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with Model.define_operators({">>": chain}):
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layers = (
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Relu(hidden_width)
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>> Dropout(dropout)
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>> Relu(hidden_width)
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>> Dropout(dropout)
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>> Softmax()
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)
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model = char_embed >> with_array(layers)
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model.initialize(X=input_sample, Y=output_sample)
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```
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The built-in [pipeline components](/usage/processing-pipelines) in spaCy ensure
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that their internal models are **always initialized** with appropriate sample
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data. In this case, `X` is typically a ~~List[Doc]~~, while `Y` is typically a
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~~List[Array1d]~~ or ~~List[Array2d]~~, depending on the specific task. This
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functionality is triggered when
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[`nlp.begin_training`](/api/language#begin_training) is called.
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### Dropout and normalization in Thinc {#thinc-dropout-norm}
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||
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Many of the available Thinc [layers](https://thinc.ai/docs/api-layers) allow you
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to define a `dropout` argument that will result in "chaining" an additional
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[`Dropout`](https://thinc.ai/docs/api-layers#dropout) layer. Optionally, you can
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||
often specify whether or not you want to add layer normalization, which would
|
||
result in an additional
|
||
[`LayerNorm`](https://thinc.ai/docs/api-layers#layernorm) layer. That means that
|
||
the following `layers` definition is equivalent to the previous:
|
||
|
||
```python
|
||
with Model.define_operators({">>": chain}):
|
||
layers = (
|
||
Relu(hidden_width, dropout=dropout, normalize=False)
|
||
>> Relu(hidden_width, dropout=dropout, normalize=False)
|
||
>> Softmax()
|
||
)
|
||
model = char_embed >> with_array(layers)
|
||
model.initialize(X=input_sample, Y=output_sample)
|
||
```
|
||
|
||
## Create new trainable components {#components}
|
||
|
||
<Infobox title="This section is still under construction" emoji="🚧" variant="warning">
|
||
</Infobox>
|
||
|
||
<!-- TODO: write trainable component section
|
||
- Interaction with `predict`, `get_loss` and `set_annotations`
|
||
- Initialization life-cycle with `begin_training`, correlation with add_label
|
||
Example: relation extraction component (implemented as project template)
|
||
Avoid duplication with usage/processing-pipelines#trainable-components ?
|
||
-->
|
||
|
||
<!-- ![Diagram of a pipeline component with its model](../images/layers-architectures.svg)
|
||
|
||
```python
|
||
def update(self, examples):
|
||
docs = [ex.predicted for ex in examples]
|
||
refs = [ex.reference for ex in examples]
|
||
predictions, backprop = self.model.begin_update(docs)
|
||
gradient = self.get_loss(predictions, refs)
|
||
backprop(gradient)
|
||
|
||
def __call__(self, doc):
|
||
predictions = self.model([doc])
|
||
self.set_annotations(predictions)
|
||
```
|
||
-->
|