* Add SpanRuler component Add a `SpanRuler` component similar to `EntityRuler` that saves a list of matched spans to `Doc.spans[spans_key]`. The matches from the token and phrase matchers are deduplicated and sorted before assignment but are not otherwise filtered. * Update spacy/pipeline/span_ruler.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix cast * Add self.key property * Use number of patterns as length * Remove patterns kwarg from init * Update spacy/tests/pipeline/test_span_ruler.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Add options for spans filter and setting to ents * Add `spans_filter` option as a registered function' * Make `spans_key` optional and if `None`, set to `doc.ents` instead of `doc.spans[spans_key]`. * Update and generalize tests * Add test for setting doc.ents, fix key property type * Fix typing * Allow independent doc.spans and doc.ents * If `spans_key` is set, set `doc.spans` with `spans_filter`. * If `annotate_ents` is set, set `doc.ents` with `ents_fitler`. * Use `util.filter_spans` by default as `ents_filter`. * Use a custom warning if the filter does not work for `doc.ents`. * Enable use of SpanC.id in Span * Support id in SpanRuler as Span.id * Update types * `id` can only be provided as string (already by `PatternType` definition) * Update all uses of Span.id/ent_id in Doc * Rename Span id kwarg to span_id * Update types and docs * Add ents filter to mimic EntityRuler overwrite_ents * Refactor `ents_filter` to take `entities, spans` args for more filtering options * Give registered filters more descriptive names * Allow registered `filter_spans` filter (`spacy.first_longest_spans_filter.v1`) to take any number of `Iterable[Span]` objects as args so it can be used for spans filter or ents filter * Implement future entity ruler as span ruler Implement a compatible `entity_ruler` as `future_entity_ruler` using `SpanRuler` as the underlying component: * Add `sort_key` and `sort_reverse` to allow the sorting behavior to be customized. (Necessary for the same sorting/filtering as in `EntityRuler`.) * Implement `overwrite_overlapping_ents_filter` and `preserve_existing_ents_filter` to support `EntityRuler.overwrite_ents` settings. * Add `remove_by_id` to support `EntityRuler.remove` functionality. * Refactor `entity_ruler` tests to parametrize all tests to test both `entity_ruler` and `future_entity_ruler` * Implement `SpanRuler.token_patterns` and `SpanRuler.phrase_patterns` properties. Additional changes: * Move all config settings to top-level attributes to avoid duplicating settings in the config vs. `span_ruler/cfg`. (Also avoids a lot of casting.) * Format * Fix filter make method name * Refactor to use same error for removing by label or ID * Also provide existing spans to spans filter * Support ids property * Remove token_patterns and phrase_patterns * Update docstrings * Add span ruler docs * Fix types * Apply suggestions from code review Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Move sorting into filters * Check for all tokens in seen tokens in entity ruler filters * Remove registered sort key * Set Token.ent_id in a backwards-compatible way in Doc.set_ents * Remove sort options from API docs * Update docstrings * Rename entity ruler filters * Fix and parameterize scoring * Add id to Span API docs * Fix typo in API docs * Include explicit labeled=True for scorer Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
17 KiB
title | tag | source | new | teaser | api_string_name | api_trainable |
---|---|---|---|---|---|---|
SpanRuler | class | spacy/pipeline/span_ruler.py | 3.3 | Pipeline component for rule-based span and named entity recognition | span_ruler | false |
The span ruler lets you add spans to Doc.spans
and/or
Doc.ents
using token-based rules or exact phrase matches. For
usage examples, see the docs on
rule-based span matching.
Assigned Attributes
Matches will be saved to Doc.spans[spans_key]
as a
SpanGroup
and/or to Doc.ents
, where the annotation is
saved in the Token.ent_type
and Token.ent_iob
fields.
Location | Value |
---|---|
Doc.spans[spans_key] |
The annotated spans. |
Doc.ents |
The annotated spans. |
Token.ent_iob |
An enum encoding of the IOB part of the named entity tag. |
Token.ent_iob_ |
The IOB part of the named entity tag. |
Token.ent_type |
The label part of the named entity tag (hash). |
Token.ent_type_ |
The label part of the named entity tag. |
Config and implementation
The default config is defined by the pipeline component factory and describes
how the component should be configured. You can override its settings via the
config
argument on nlp.add_pipe
or in your
config.cfg
.
Example
config = { "spans_key": "my_spans", "validate": True, "overwrite": False, } nlp.add_pipe("span_ruler", config=config)
Setting | Description |
---|---|
spans_key |
The spans key to save the spans under. If None , no spans are saved. Defaults to "ruler" . |
spans_filter |
The optional method to filter spans before they are assigned to doc.spans. Defaults to None . |
annotate_ents |
Whether to save spans to doc.ents. Defaults to False . |
ents_filter |
The method to filter spans before they are assigned to doc.ents. Defaults to util.filter_chain_spans . |
phrase_matcher_attr |
Token attribute to match on, passed to the internal PhraseMatcher as attr . Defaults to None . |
validate |
Whether patterns should be validated, passed to Matcher and PhraseMatcher as validate . Defaults to False . |
overwrite |
Whether to remove any existing spans under Doc.spans[spans key] if spans_key is set, or to remove any ents under Doc.ents if annotate_ents is set. Defaults to True . |
scorer |
The scoring method. Defaults to Scorer.score_spans for Doc.spans[spans_key] with overlapping spans allowed. |
%%GITHUB_SPACY/spacy/pipeline/span_ruler.py
SpanRuler.__init__
Initialize the span ruler. If patterns are supplied here, they need to be a list
of dictionaries with a "label"
and "pattern"
key. A pattern can either be a
token pattern (list) or a phrase pattern (string). For example:
{"label": "ORG", "pattern": "Apple"}
.
Example
# Construction via add_pipe ruler = nlp.add_pipe("span_ruler") # Construction from class from spacy.pipeline import SpanRuler ruler = SpanRuler(nlp, overwrite=True)
Name | Description |
---|---|
nlp |
The shared nlp object to pass the vocab to the matchers and process phrase patterns. |
name |
Instance name of the current pipeline component. Typically passed in automatically from the factory when the component is added. Used to disable the current span ruler while creating phrase patterns with the nlp object. |
keyword-only | |
spans_key |
The spans key to save the spans under. If None , no spans are saved. Defaults to "ruler" . |
spans_filter |
The optional method to filter spans before they are assigned to doc.spans. Defaults to None . |
annotate_ents |
Whether to save spans to doc.ents. Defaults to False . |
ents_filter |
The method to filter spans before they are assigned to doc.ents. Defaults to util.filter_chain_spans . |
phrase_matcher_attr |
Token attribute to match on, passed to the internal PhraseMatcher as attr . Defaults to None . |
validate |
Whether patterns should be validated, passed to Matcher and PhraseMatcher as validate . Defaults to False . |
overwrite |
Whether to remove any existing spans under Doc.spans[spans key] if spans_key is set, or to remove any ents under Doc.ents if annotate_ents is set. Defaults to True . |
scorer |
The scoring method. Defaults to Scorer.score_spans for Doc.spans[spans_key] with overlapping spans allowed. |
SpanRuler.initialize
Initialize the component with data and used before training to load in rules
from a pattern file. This method
is typically called by Language.initialize
and
lets you customize arguments it receives via the
[initialize.components]
block in the
config. Any existing patterns are removed on initialization.
Example
span_ruler = nlp.add_pipe("span_ruler") span_ruler.initialize(lambda: [], nlp=nlp, patterns=patterns)
### config.cfg [initialize.components.span_ruler] [initialize.components.span_ruler.patterns] @readers = "srsly.read_jsonl.v1" path = "corpus/span_ruler_patterns.jsonl
Name | Description |
---|---|
get_examples |
Function that returns gold-standard annotations in the form of Example objects. Not used by the SpanRuler . |
keyword-only | |
nlp |
The current nlp object. Defaults to None . |
patterns |
The list of patterns. Defaults to None . |
SpanRuler._\len__
The number of all patterns added to the span ruler.
Example
ruler = nlp.add_pipe("span_ruler") assert len(ruler) == 0 ruler.add_patterns([{"label": "ORG", "pattern": "Apple"}]) assert len(ruler) == 1
Name | Description |
---|---|
RETURNS | The number of patterns. |
SpanRuler.__contains__
Whether a label is present in the patterns.
Example
ruler = nlp.add_pipe("span_ruler") ruler.add_patterns([{"label": "ORG", "pattern": "Apple"}]) assert "ORG" in ruler assert not "PERSON" in ruler
Name | Description |
---|---|
label |
The label to check. |
RETURNS | Whether the span ruler contains the label. |
SpanRuler.__call__
Find matches in the Doc
and add them to doc.spans[span_key]
and/or
doc.ents
. Typically, this happens automatically after the component has been
added to the pipeline using nlp.add_pipe
. If the
span ruler was initialized with overwrite=True
, existing spans and entities
will be removed.
Example
ruler = nlp.add_pipe("span_ruler") ruler.add_patterns([{"label": "ORG", "pattern": "Apple"}]) doc = nlp("A text about Apple.") spans = [(span.text, span.label_) for span in doc.spans["ruler"]] assert spans == [("Apple", "ORG")]
Name | Description |
---|---|
doc |
The Doc object to process, e.g. the Doc in the pipeline. |
RETURNS | The modified Doc with added spans/entities. |
SpanRuler.add_patterns
Add patterns to the span ruler. A pattern can either be a token pattern (list of dicts) or a phrase pattern (string). For more details, see the usage guide on rule-based matching.
Example
patterns = [ {"label": "ORG", "pattern": "Apple"}, {"label": "GPE", "pattern": [{"lower": "san"}, {"lower": "francisco"}]} ] ruler = nlp.add_pipe("span_ruler") ruler.add_patterns(patterns)
Name | Description |
---|---|
patterns |
The patterns to add. |
SpanRuler.remove
Remove patterns by label from the span ruler. A ValueError
is raised if the
label does not exist in any patterns.
Example
patterns = [{"label": "ORG", "pattern": "Apple", "id": "apple"}] ruler = nlp.add_pipe("span_ruler") ruler.add_patterns(patterns) ruler.remove("ORG")
Name | Description |
---|---|
label |
The label of the pattern rule. |
SpanRuler.remove_by_id
Remove patterns by ID from the span ruler. A ValueError
is raised if the ID
does not exist in any patterns.
Example
patterns = [{"label": "ORG", "pattern": "Apple", "id": "apple"}] ruler = nlp.add_pipe("span_ruler") ruler.add_patterns(patterns) ruler.remove_by_id("apple")
Name | Description |
---|---|
pattern_id |
The ID of the pattern rule. |
SpanRuler.clear
Remove all patterns the span ruler.
Example
patterns = [{"label": "ORG", "pattern": "Apple", "id": "apple"}] ruler = nlp.add_pipe("span_ruler") ruler.add_patterns(patterns) ruler.clear()
SpanRuler.to_disk
Save the span ruler patterns to a directory. The patterns will be saved as newline-delimited JSON (JSONL).
Example
ruler = nlp.add_pipe("span_ruler") ruler.to_disk("/path/to/span_ruler")
Name | Description |
---|---|
path |
A path to a directory, which will be created if it doesn't exist. Paths may be either strings or Path -like objects. |
SpanRuler.from_disk
Load the span ruler from a path.
Example
ruler = nlp.add_pipe("span_ruler") ruler.from_disk("/path/to/span_ruler")
Name | Description |
---|---|
path |
A path to a directory. Paths may be either strings or Path -like objects. |
RETURNS | The modified SpanRuler object. |
SpanRuler.to_bytes
Serialize the span ruler to a bytestring.
Example
ruler = nlp.add_pipe("span_ruler") ruler_bytes = ruler.to_bytes()
Name | Description |
---|---|
RETURNS | The serialized patterns. |
SpanRuler.from_bytes
Load the pipe from a bytestring. Modifies the object in place and returns it.
Example
ruler_bytes = ruler.to_bytes() ruler = nlp.add_pipe("span_ruler") ruler.from_bytes(ruler_bytes)
Name | Description |
---|---|
bytes_data |
The bytestring to load. |
RETURNS | The modified SpanRuler object. |
SpanRuler.labels
All labels present in the match patterns.
Name | Description |
---|---|
RETURNS | The string labels. |
SpanRuler.ids
All IDs present in the id
property of the match patterns.
Name | Description |
---|---|
RETURNS | The string IDs. |
SpanRuler.patterns
All patterns that were added to the span ruler.
Name | Description |
---|---|
RETURNS | The original patterns, one dictionary per pattern. |
Attributes
Name | Description |
---|---|
key |
The spans key that spans are saved under. |
matcher |
The underlying matcher used to process token patterns. |
phrase_matcher |
The underlying phrase matcher used to process phrase patterns. |