* Add SpanRuler component Add a `SpanRuler` component similar to `EntityRuler` that saves a list of matched spans to `Doc.spans[spans_key]`. The matches from the token and phrase matchers are deduplicated and sorted before assignment but are not otherwise filtered. * Update spacy/pipeline/span_ruler.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix cast * Add self.key property * Use number of patterns as length * Remove patterns kwarg from init * Update spacy/tests/pipeline/test_span_ruler.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Add options for spans filter and setting to ents * Add `spans_filter` option as a registered function' * Make `spans_key` optional and if `None`, set to `doc.ents` instead of `doc.spans[spans_key]`. * Update and generalize tests * Add test for setting doc.ents, fix key property type * Fix typing * Allow independent doc.spans and doc.ents * If `spans_key` is set, set `doc.spans` with `spans_filter`. * If `annotate_ents` is set, set `doc.ents` with `ents_fitler`. * Use `util.filter_spans` by default as `ents_filter`. * Use a custom warning if the filter does not work for `doc.ents`. * Enable use of SpanC.id in Span * Support id in SpanRuler as Span.id * Update types * `id` can only be provided as string (already by `PatternType` definition) * Update all uses of Span.id/ent_id in Doc * Rename Span id kwarg to span_id * Update types and docs * Add ents filter to mimic EntityRuler overwrite_ents * Refactor `ents_filter` to take `entities, spans` args for more filtering options * Give registered filters more descriptive names * Allow registered `filter_spans` filter (`spacy.first_longest_spans_filter.v1`) to take any number of `Iterable[Span]` objects as args so it can be used for spans filter or ents filter * Implement future entity ruler as span ruler Implement a compatible `entity_ruler` as `future_entity_ruler` using `SpanRuler` as the underlying component: * Add `sort_key` and `sort_reverse` to allow the sorting behavior to be customized. (Necessary for the same sorting/filtering as in `EntityRuler`.) * Implement `overwrite_overlapping_ents_filter` and `preserve_existing_ents_filter` to support `EntityRuler.overwrite_ents` settings. * Add `remove_by_id` to support `EntityRuler.remove` functionality. * Refactor `entity_ruler` tests to parametrize all tests to test both `entity_ruler` and `future_entity_ruler` * Implement `SpanRuler.token_patterns` and `SpanRuler.phrase_patterns` properties. Additional changes: * Move all config settings to top-level attributes to avoid duplicating settings in the config vs. `span_ruler/cfg`. (Also avoids a lot of casting.) * Format * Fix filter make method name * Refactor to use same error for removing by label or ID * Also provide existing spans to spans filter * Support ids property * Remove token_patterns and phrase_patterns * Update docstrings * Add span ruler docs * Fix types * Apply suggestions from code review Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Move sorting into filters * Check for all tokens in seen tokens in entity ruler filters * Remove registered sort key * Set Token.ent_id in a backwards-compatible way in Doc.set_ents * Remove sort options from API docs * Update docstrings * Rename entity ruler filters * Fix and parameterize scoring * Add id to Span API docs * Fix typo in API docs * Include explicit labeled=True for scorer Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
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title | tag | source | new | teaser | api_string_name | api_trainable |
---|---|---|---|---|---|---|
EntityRuler | class | spacy/pipeline/entityruler.py | 2.1 | Pipeline component for rule-based named entity recognition | entity_ruler | false |
The entity ruler lets you add spans to the Doc.ents
using
token-based rules or exact phrase matches. It can be combined with the
statistical EntityRecognizer
to boost accuracy, or
used on its own to implement a purely rule-based entity recognition system. For
usage examples, see the docs on
rule-based entity recognition.
Assigned Attributes
This component assigns predictions basically the same way as the
EntityRecognizer
.
Predictions can be accessed under Doc.ents
as a tuple. Each label will also be
reflected in each underlying token, where it is saved in the Token.ent_type
and Token.ent_iob
fields. Note that by definition each token can only have one
label.
When setting Doc.ents
to create training data, all the spans must be valid and
non-overlapping, or an error will be thrown.
Location | Value |
---|---|
Doc.ents |
The annotated spans. |
Token.ent_iob |
An enum encoding of the IOB part of the named entity tag. |
Token.ent_iob_ |
The IOB part of the named entity tag. |
Token.ent_type |
The label part of the named entity tag (hash). |
Token.ent_type_ |
The label part of the named entity tag. |
Config and implementation
The default config is defined by the pipeline component factory and describes
how the component should be configured. You can override its settings via the
config
argument on nlp.add_pipe
or in your
config.cfg
for training.
Example
config = { "phrase_matcher_attr": None, "validate": True, "overwrite_ents": False, "ent_id_sep": "||", } nlp.add_pipe("entity_ruler", config=config)
Setting | Description |
---|---|
phrase_matcher_attr |
Optional attribute name match on for the internal PhraseMatcher , e.g. LOWER to match on the lowercase token text. Defaults to None . |
validate |
Whether patterns should be validated (passed to the Matcher and PhraseMatcher ). Defaults to False . |
overwrite_ents |
If existing entities are present, e.g. entities added by the model, overwrite them by matches if necessary. Defaults to False . |
ent_id_sep |
Separator used internally for entity IDs. Defaults to "||" . |
scorer |
The scoring method. Defaults to spacy.scorer.get_ner_prf . |
%%GITHUB_SPACY/spacy/pipeline/entityruler.py
EntityRuler.__init__
Initialize the entity ruler. If patterns are supplied here, they need to be a
list of dictionaries with a "label"
and "pattern"
key. A pattern can either
be a token pattern (list) or a phrase pattern (string). For example:
{"label": "ORG", "pattern": "Apple"}
.
Example
# Construction via add_pipe ruler = nlp.add_pipe("entity_ruler") # Construction from class from spacy.pipeline import EntityRuler ruler = EntityRuler(nlp, overwrite_ents=True)
Name | Description |
---|---|
nlp |
The shared nlp object to pass the vocab to the matchers and process phrase patterns. |
name 3 |
Instance name of the current pipeline component. Typically passed in automatically from the factory when the component is added. Used to disable the current entity ruler while creating phrase patterns with the nlp object. |
keyword-only | |
phrase_matcher_attr |
Optional attribute name match on for the internal PhraseMatcher , e.g. LOWER to match on the lowercase token text. Defaults to None . |
validate |
Whether patterns should be validated, passed to Matcher and PhraseMatcher as validate . Defaults to False . |
overwrite_ents |
If existing entities are present, e.g. entities added by the model, overwrite them by matches if necessary. Defaults to False . |
ent_id_sep |
Separator used internally for entity IDs. Defaults to "||" . |
patterns |
Optional patterns to load in on initialization. |
EntityRuler.initialize
Initialize the component with data and used before training to load in rules
from a pattern file. This method
is typically called by Language.initialize
and
lets you customize arguments it receives via the
[initialize.components]
block in the
config.
Example
entity_ruler = nlp.add_pipe("entity_ruler") entity_ruler.initialize(lambda: [], nlp=nlp, patterns=patterns)
### config.cfg [initialize.components.entity_ruler] [initialize.components.entity_ruler.patterns] @readers = "srsly.read_jsonl.v1" path = "corpus/entity_ruler_patterns.jsonl
Name | Description |
---|---|
get_examples |
Function that returns gold-standard annotations in the form of Example objects. Not used by the EntityRuler . |
keyword-only | |
nlp |
The current nlp object. Defaults to None . |
patterns |
The list of patterns. Defaults to None . |
EntityRuler._\len__
The number of all patterns added to the entity ruler.
Example
ruler = nlp.add_pipe("entity_ruler") assert len(ruler) == 0 ruler.add_patterns([{"label": "ORG", "pattern": "Apple"}]) assert len(ruler) == 1
Name | Description |
---|---|
RETURNS | The number of patterns. |
EntityRuler.__contains__
Whether a label is present in the patterns.
Example
ruler = nlp.add_pipe("entity_ruler") ruler.add_patterns([{"label": "ORG", "pattern": "Apple"}]) assert "ORG" in ruler assert not "PERSON" in ruler
Name | Description |
---|---|
label |
The label to check. |
RETURNS | Whether the entity ruler contains the label. |
EntityRuler.__call__
Find matches in the Doc
and add them to the doc.ents
. Typically, this
happens automatically after the component has been added to the pipeline using
nlp.add_pipe
. If the entity ruler was initialized
with overwrite_ents=True
, existing entities will be replaced if they overlap
with the matches. When matches overlap in a Doc, the entity ruler prioritizes
longer patterns over shorter, and if equal the match occuring first in the Doc
is chosen.
Example
ruler = nlp.add_pipe("entity_ruler") ruler.add_patterns([{"label": "ORG", "pattern": "Apple"}]) doc = nlp("A text about Apple.") ents = [(ent.text, ent.label_) for ent in doc.ents] assert ents == [("Apple", "ORG")]
Name | Description |
---|---|
doc |
The Doc object to process, e.g. the Doc in the pipeline. |
RETURNS | The modified Doc with added entities, if available. |
EntityRuler.add_patterns
Add patterns to the entity ruler. A pattern can either be a token pattern (list of dicts) or a phrase pattern (string). For more details, see the usage guide on rule-based matching.
Example
patterns = [ {"label": "ORG", "pattern": "Apple"}, {"label": "GPE", "pattern": [{"lower": "san"}, {"lower": "francisco"}]} ] ruler = nlp.add_pipe("entity_ruler") ruler.add_patterns(patterns)
Name | Description |
---|---|
patterns |
The patterns to add. |
EntityRuler.remove
Remove a pattern by its ID from the entity ruler. A ValueError
is raised if the ID does not exist.
Example
patterns = [{"label": "ORG", "pattern": "Apple", "id": "apple"}] ruler = nlp.add_pipe("entity_ruler") ruler.add_patterns(patterns) ruler.remove("apple")
Name | Description |
---|---|
id |
The ID of the pattern rule. |
EntityRuler.to_disk
Save the entity ruler patterns to a directory. The patterns will be saved as
newline-delimited JSON (JSONL). If a file with the suffix .jsonl
is provided,
only the patterns are saved as JSONL. If a directory name is provided, a
patterns.jsonl
and cfg
file with the component configuration is exported.
Example
ruler = nlp.add_pipe("entity_ruler") ruler.to_disk("/path/to/patterns.jsonl") # saves patterns only ruler.to_disk("/path/to/entity_ruler") # saves patterns and config
Name | Description |
---|---|
path |
A path to a JSONL file or directory, which will be created if it doesn't exist. Paths may be either strings or Path -like objects. |
EntityRuler.from_disk
Load the entity ruler from a path. Expects either a file containing
newline-delimited JSON (JSONL) with one entry per line, or a directory
containing a patterns.jsonl
file and a cfg
file with the component
configuration.
Example
ruler = nlp.add_pipe("entity_ruler") ruler.from_disk("/path/to/patterns.jsonl") # loads patterns only ruler.from_disk("/path/to/entity_ruler") # loads patterns and config
Name | Description |
---|---|
path |
A path to a JSONL file or directory. Paths may be either strings or Path -like objects. |
RETURNS | The modified EntityRuler object. |
EntityRuler.to_bytes
Serialize the entity ruler patterns to a bytestring.
Example
ruler = nlp.add_pipe("entity_ruler") ruler_bytes = ruler.to_bytes()
Name | Description |
---|---|
RETURNS | The serialized patterns. |
EntityRuler.from_bytes
Load the pipe from a bytestring. Modifies the object in place and returns it.
Example
ruler_bytes = ruler.to_bytes() ruler = nlp.add_pipe("entity_ruler") ruler.from_bytes(ruler_bytes)
Name | Description |
---|---|
bytes_data |
The bytestring to load. |
RETURNS | The modified EntityRuler object. |
EntityRuler.labels
All labels present in the match patterns.
Name | Description |
---|---|
RETURNS | The string labels. |
EntityRuler.ent_ids
All entity IDs present in the id
properties of the match patterns.
Name | Description |
---|---|
RETURNS | The string IDs. |
EntityRuler.patterns
Get all patterns that were added to the entity ruler.
Name | Description |
---|---|
RETURNS | The original patterns, one dictionary per pattern. |
Attributes
Name | Description |
---|---|
matcher |
The underlying matcher used to process token patterns. |
phrase_matcher |
The underlying phrase matcher used to process phrase patterns. |
token_patterns |
The token patterns present in the entity ruler, keyed by label. |
phrase_patterns |
The phrase patterns present in the entity ruler, keyed by label. |