spaCy/website/docs/api/entityruler.md
Adriane Boyd a322d6d5f2
Add SpanRuler component (#9880)
* Add SpanRuler component

Add a `SpanRuler` component similar to `EntityRuler` that saves a list
of matched spans to `Doc.spans[spans_key]`. The matches from the token
and phrase matchers are deduplicated and sorted before assignment but
are not otherwise filtered.

* Update spacy/pipeline/span_ruler.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Fix cast

* Add self.key property

* Use number of patterns as length

* Remove patterns kwarg from init

* Update spacy/tests/pipeline/test_span_ruler.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Add options for spans filter and setting to ents

* Add `spans_filter` option as a registered function'
* Make `spans_key` optional and if `None`, set to `doc.ents` instead of
`doc.spans[spans_key]`.

* Update and generalize tests

* Add test for setting doc.ents, fix key property type

* Fix typing

* Allow independent doc.spans and doc.ents

* If `spans_key` is set, set `doc.spans` with `spans_filter`.
* If `annotate_ents` is set, set `doc.ents` with `ents_fitler`.
  * Use `util.filter_spans` by default as `ents_filter`.
  * Use a custom warning if the filter does not work for `doc.ents`.

* Enable use of SpanC.id in Span

* Support id in SpanRuler as Span.id

* Update types

* `id` can only be provided as string (already by `PatternType`
definition)

* Update all uses of Span.id/ent_id in Doc

* Rename Span id kwarg to span_id

* Update types and docs

* Add ents filter to mimic EntityRuler overwrite_ents

* Refactor `ents_filter` to take `entities, spans` args for more
  filtering options
* Give registered filters more descriptive names
* Allow registered `filter_spans` filter
  (`spacy.first_longest_spans_filter.v1`) to take any number of
  `Iterable[Span]` objects as args so it can be used for spans filter
  or ents filter

* Implement future entity ruler as span ruler

Implement a compatible `entity_ruler` as `future_entity_ruler` using
`SpanRuler` as the underlying component:
* Add `sort_key` and `sort_reverse` to allow the sorting behavior to be
  customized. (Necessary for the same sorting/filtering as in
  `EntityRuler`.)
* Implement `overwrite_overlapping_ents_filter` and
  `preserve_existing_ents_filter` to support
  `EntityRuler.overwrite_ents` settings.
* Add `remove_by_id` to support `EntityRuler.remove` functionality.
* Refactor `entity_ruler` tests to parametrize all tests to test both
  `entity_ruler` and `future_entity_ruler`
* Implement `SpanRuler.token_patterns` and `SpanRuler.phrase_patterns`
  properties.

Additional changes:

* Move all config settings to top-level attributes to avoid duplicating
  settings in the config vs. `span_ruler/cfg`. (Also avoids a lot of
  casting.)

* Format

* Fix filter make method name

* Refactor to use same error for removing by label or ID

* Also provide existing spans to spans filter

* Support ids property

* Remove token_patterns and phrase_patterns

* Update docstrings

* Add span ruler docs

* Fix types

* Apply suggestions from code review

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Move sorting into filters

* Check for all tokens in seen tokens in entity ruler filters

* Remove registered sort key

* Set Token.ent_id in a backwards-compatible way in Doc.set_ents

* Remove sort options from API docs

* Update docstrings

* Rename entity ruler filters

* Fix and parameterize scoring

* Add id to Span API docs

* Fix typo in API docs

* Include explicit labeled=True for scorer

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-06-02 13:12:53 +02:00

17 KiB

title tag source new teaser api_string_name api_trainable
EntityRuler class spacy/pipeline/entityruler.py 2.1 Pipeline component for rule-based named entity recognition entity_ruler false

The entity ruler lets you add spans to the Doc.ents using token-based rules or exact phrase matches. It can be combined with the statistical EntityRecognizer to boost accuracy, or used on its own to implement a purely rule-based entity recognition system. For usage examples, see the docs on rule-based entity recognition.

Assigned Attributes

This component assigns predictions basically the same way as the EntityRecognizer.

Predictions can be accessed under Doc.ents as a tuple. Each label will also be reflected in each underlying token, where it is saved in the Token.ent_type and Token.ent_iob fields. Note that by definition each token can only have one label.

When setting Doc.ents to create training data, all the spans must be valid and non-overlapping, or an error will be thrown.

Location Value
Doc.ents The annotated spans. Tuple[Span]
Token.ent_iob An enum encoding of the IOB part of the named entity tag. int
Token.ent_iob_ The IOB part of the named entity tag. str
Token.ent_type The label part of the named entity tag (hash). int
Token.ent_type_ The label part of the named entity tag. str

Config and implementation

The default config is defined by the pipeline component factory and describes how the component should be configured. You can override its settings via the config argument on nlp.add_pipe or in your config.cfg for training.

Example

config = {
   "phrase_matcher_attr": None,
   "validate": True,
   "overwrite_ents": False,
   "ent_id_sep": "||",
}
nlp.add_pipe("entity_ruler", config=config)
Setting Description
phrase_matcher_attr Optional attribute name match on for the internal PhraseMatcher, e.g. LOWER to match on the lowercase token text. Defaults to None. Optional[Union[int, str]]
validate Whether patterns should be validated (passed to the Matcher and PhraseMatcher). Defaults to False. bool
overwrite_ents If existing entities are present, e.g. entities added by the model, overwrite them by matches if necessary. Defaults to False. bool
ent_id_sep Separator used internally for entity IDs. Defaults to "||". str
scorer The scoring method. Defaults to spacy.scorer.get_ner_prf. Optional[Callable]
%%GITHUB_SPACY/spacy/pipeline/entityruler.py

EntityRuler.__init__

Initialize the entity ruler. If patterns are supplied here, they need to be a list of dictionaries with a "label" and "pattern" key. A pattern can either be a token pattern (list) or a phrase pattern (string). For example: {"label": "ORG", "pattern": "Apple"}.

Example

# Construction via add_pipe
ruler = nlp.add_pipe("entity_ruler")

# Construction from class
from spacy.pipeline import EntityRuler
ruler = EntityRuler(nlp, overwrite_ents=True)
Name Description
nlp The shared nlp object to pass the vocab to the matchers and process phrase patterns. Language
name 3 Instance name of the current pipeline component. Typically passed in automatically from the factory when the component is added. Used to disable the current entity ruler while creating phrase patterns with the nlp object. str
keyword-only
phrase_matcher_attr Optional attribute name match on for the internal PhraseMatcher, e.g. LOWER to match on the lowercase token text. Defaults to None. Optional[Union[int, str]]
validate Whether patterns should be validated, passed to Matcher and PhraseMatcher as validate. Defaults to False. bool
overwrite_ents If existing entities are present, e.g. entities added by the model, overwrite them by matches if necessary. Defaults to False. bool
ent_id_sep Separator used internally for entity IDs. Defaults to "||". str
patterns Optional patterns to load in on initialization. Optional[List[Dict[str, Union[str, List[dict]]]]]

EntityRuler.initialize

Initialize the component with data and used before training to load in rules from a pattern file. This method is typically called by Language.initialize and lets you customize arguments it receives via the [initialize.components] block in the config.

Example

entity_ruler = nlp.add_pipe("entity_ruler")
entity_ruler.initialize(lambda: [], nlp=nlp, patterns=patterns)
### config.cfg
[initialize.components.entity_ruler]

[initialize.components.entity_ruler.patterns]
@readers = "srsly.read_jsonl.v1"
path = "corpus/entity_ruler_patterns.jsonl
Name Description
get_examples Function that returns gold-standard annotations in the form of Example objects. Not used by the EntityRuler. Callable], Iterable[Example
keyword-only
nlp The current nlp object. Defaults to None. Optional[Language]
patterns The list of patterns. Defaults to None. Optional[Sequence[Dict[str, Union[str, List[Dict[str, Any]]]]]]

EntityRuler._\len__

The number of all patterns added to the entity ruler.

Example

ruler = nlp.add_pipe("entity_ruler")
assert len(ruler) == 0
ruler.add_patterns([{"label": "ORG", "pattern": "Apple"}])
assert len(ruler) == 1
Name Description
RETURNS The number of patterns. int

EntityRuler.__contains__

Whether a label is present in the patterns.

Example

ruler = nlp.add_pipe("entity_ruler")
ruler.add_patterns([{"label": "ORG", "pattern": "Apple"}])
assert "ORG" in ruler
assert not "PERSON" in ruler
Name Description
label The label to check. str
RETURNS Whether the entity ruler contains the label. bool

EntityRuler.__call__

Find matches in the Doc and add them to the doc.ents. Typically, this happens automatically after the component has been added to the pipeline using nlp.add_pipe. If the entity ruler was initialized with overwrite_ents=True, existing entities will be replaced if they overlap with the matches. When matches overlap in a Doc, the entity ruler prioritizes longer patterns over shorter, and if equal the match occuring first in the Doc is chosen.

Example

ruler = nlp.add_pipe("entity_ruler")
ruler.add_patterns([{"label": "ORG", "pattern": "Apple"}])

doc = nlp("A text about Apple.")
ents = [(ent.text, ent.label_) for ent in doc.ents]
assert ents == [("Apple", "ORG")]
Name Description
doc The Doc object to process, e.g. the Doc in the pipeline. Doc
RETURNS The modified Doc with added entities, if available. Doc

EntityRuler.add_patterns

Add patterns to the entity ruler. A pattern can either be a token pattern (list of dicts) or a phrase pattern (string). For more details, see the usage guide on rule-based matching.

Example

patterns = [
    {"label": "ORG", "pattern": "Apple"},
    {"label": "GPE", "pattern": [{"lower": "san"}, {"lower": "francisco"}]}
]
ruler = nlp.add_pipe("entity_ruler")
ruler.add_patterns(patterns)
Name Description
patterns The patterns to add. List[Dict[str, Union[str, List[dict]]]]

EntityRuler.remove

Remove a pattern by its ID from the entity ruler. A ValueError is raised if the ID does not exist.

Example

patterns = [{"label": "ORG", "pattern": "Apple", "id": "apple"}]
ruler = nlp.add_pipe("entity_ruler")
ruler.add_patterns(patterns)
ruler.remove("apple")
Name Description
id The ID of the pattern rule. str

EntityRuler.to_disk

Save the entity ruler patterns to a directory. The patterns will be saved as newline-delimited JSON (JSONL). If a file with the suffix .jsonl is provided, only the patterns are saved as JSONL. If a directory name is provided, a patterns.jsonl and cfg file with the component configuration is exported.

Example

ruler = nlp.add_pipe("entity_ruler")
ruler.to_disk("/path/to/patterns.jsonl")  # saves patterns only
ruler.to_disk("/path/to/entity_ruler")    # saves patterns and config
Name Description
path A path to a JSONL file or directory, which will be created if it doesn't exist. Paths may be either strings or Path-like objects. Union[str, Path]

EntityRuler.from_disk

Load the entity ruler from a path. Expects either a file containing newline-delimited JSON (JSONL) with one entry per line, or a directory containing a patterns.jsonl file and a cfg file with the component configuration.

Example

ruler = nlp.add_pipe("entity_ruler")
ruler.from_disk("/path/to/patterns.jsonl")  # loads patterns only
ruler.from_disk("/path/to/entity_ruler")    # loads patterns and config
Name Description
path A path to a JSONL file or directory. Paths may be either strings or Path-like objects. Union[str, Path]
RETURNS The modified EntityRuler object. EntityRuler

EntityRuler.to_bytes

Serialize the entity ruler patterns to a bytestring.

Example

ruler = nlp.add_pipe("entity_ruler")
ruler_bytes = ruler.to_bytes()
Name Description
RETURNS The serialized patterns. bytes

EntityRuler.from_bytes

Load the pipe from a bytestring. Modifies the object in place and returns it.

Example

ruler_bytes = ruler.to_bytes()
ruler = nlp.add_pipe("entity_ruler")
ruler.from_bytes(ruler_bytes)
Name Description
bytes_data The bytestring to load. bytes
RETURNS The modified EntityRuler object. EntityRuler

EntityRuler.labels

All labels present in the match patterns.

Name Description
RETURNS The string labels. Tuple[str, ...]

EntityRuler.ent_ids

All entity IDs present in the id properties of the match patterns.

Name Description
RETURNS The string IDs. Tuple[str, ...]

EntityRuler.patterns

Get all patterns that were added to the entity ruler.

Name Description
RETURNS The original patterns, one dictionary per pattern. List[Dict[str, Union[str, dict]]]

Attributes

Name Description
matcher The underlying matcher used to process token patterns. Matcher
phrase_matcher The underlying phrase matcher used to process phrase patterns. PhraseMatcher
token_patterns The token patterns present in the entity ruler, keyed by label. Dict[str, List[Dict[str, Union[str, List[dict]]]]
phrase_patterns The phrase patterns present in the entity ruler, keyed by label. Dict[str, List[Doc]]