spaCy/spacy/tests/pipeline/test_morphologizer.py
Daniël de Kok efdbb722c5
Store activations in Docs when save_activations is enabled (#11002)
* Store activations in Doc when `store_activations` is enabled

This change adds the new `activations` attribute to `Doc`. This
attribute can be used by trainable pipes to store their activations,
probabilities, and guesses for downstream users.

As an example, this change modifies the `tagger` and `senter` pipes to
add an `store_activations` option. When this option is enabled, the
probabilities and guesses are stored in `set_annotations`.

* Change type of `store_activations` to `Union[bool, List[str]]`

When the value is:

- A bool: all activations are stored when set to `True`.
- A List[str]: the activations named in the list are stored

* Formatting fixes in Tagger

* Support store_activations in spancat and morphologizer

* Make Doc.activations type visible to MyPy

* textcat/textcat_multilabel: add store_activations option

* trainable_lemmatizer/entity_linker: add store_activations option

* parser/ner: do not currently support returning activations

* Extend tagger and senter tests

So that they, like the other tests, also check that we get no
activations if no activations were requested.

* Document `Doc.activations` and `store_activations` in the relevant pipes

* Start errors/warnings at higher numbers to avoid merge conflicts

Between the master and v4 branches.

* Add `store_activations` to docstrings.

* Replace store_activations setter by set_store_activations method

Setters that take a different type than what the getter returns are still
problematic for MyPy. Replace the setter by a method, so that type inference
works everywhere.

* Use dict comprehension suggested by @svlandeg

* Revert "Use dict comprehension suggested by @svlandeg"

This reverts commit 6e7b958f70.

* EntityLinker: add type annotations to _add_activations

* _store_activations: make kwarg-only, remove doc_scores_lens arg

* set_annotations: add type annotations

* Apply suggestions from code review

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* TextCat.predict: return dict

* Make the `TrainablePipe.store_activations` property a bool

This means that we can also bring back `store_activations` setter.

* Remove `TrainablePipe.activations`

We do not need to enumerate the activations anymore since `store_activations` is
`bool`.

* Add type annotations for activations in predict/set_annotations

* Rename `TrainablePipe.store_activations` to `save_activations`

* Error E1400 is not used anymore

This error was used when activations were still `Union[bool, List[str]]`.

* Change wording in API docs after store -> save change

* docs: tag (save_)activations as new in spaCy 4.0

* Fix copied line in morphologizer activations test

* Don't train in any test_save_activations test

* Rename activations

- "probs" -> "probabilities"
- "guesses" -> "label_ids", except in the edit tree lemmatizer, where
  "guesses" -> "tree_ids".

* Remove unused W400 warning.

This warning was used when we still allowed the user to specify
which activations to save.

* Formatting fixes

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Replace "kb_ids" by a constant

* spancat: replace a cast by an assertion

* Fix EOF spacing

* Fix comments in test_save_activations tests

* Do not set RNG seed in activation saving tests

* Revert "spancat: replace a cast by an assertion"

This reverts commit 0bd5730d16.

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-09-13 09:51:12 +02:00

224 lines
7.8 KiB
Python

from typing import cast
import pytest
from numpy.testing import assert_equal
from spacy import util
from spacy.training import Example
from spacy.lang.en import English
from spacy.language import Language
from spacy.tests.util import make_tempdir
from spacy.morphology import Morphology
from spacy.pipeline import TrainablePipe
from spacy.attrs import MORPH
from spacy.tokens import Doc
def test_label_types():
nlp = Language()
morphologizer = nlp.add_pipe("morphologizer")
morphologizer.add_label("Feat=A")
with pytest.raises(ValueError):
morphologizer.add_label(9)
TRAIN_DATA = [
(
"I like green eggs",
{
"morphs": ["Feat=N", "Feat=V", "Feat=J", "Feat=N"],
"pos": ["NOUN", "VERB", "ADJ", "NOUN"],
},
),
# test combinations of morph+POS
("Eat blue ham", {"morphs": ["Feat=V", "", ""], "pos": ["", "ADJ", ""]}),
]
def test_no_label():
nlp = Language()
nlp.add_pipe("morphologizer")
with pytest.raises(ValueError):
nlp.initialize()
def test_implicit_label():
nlp = Language()
nlp.add_pipe("morphologizer")
train_examples = []
for t in TRAIN_DATA:
train_examples.append(Example.from_dict(nlp.make_doc(t[0]), t[1]))
nlp.initialize(get_examples=lambda: train_examples)
def test_no_resize():
nlp = Language()
morphologizer = nlp.add_pipe("morphologizer")
morphologizer.add_label("POS" + Morphology.FIELD_SEP + "NOUN")
morphologizer.add_label("POS" + Morphology.FIELD_SEP + "VERB")
nlp.initialize()
# this throws an error because the morphologizer can't be resized after initialization
with pytest.raises(ValueError):
morphologizer.add_label("POS" + Morphology.FIELD_SEP + "ADJ")
def test_initialize_examples():
nlp = Language()
morphologizer = nlp.add_pipe("morphologizer")
morphologizer.add_label("POS" + Morphology.FIELD_SEP + "NOUN")
train_examples = []
for t in TRAIN_DATA:
train_examples.append(Example.from_dict(nlp.make_doc(t[0]), t[1]))
# you shouldn't really call this more than once, but for testing it should be fine
nlp.initialize()
nlp.initialize(get_examples=lambda: train_examples)
with pytest.raises(TypeError):
nlp.initialize(get_examples=lambda: None)
with pytest.raises(TypeError):
nlp.initialize(get_examples=train_examples)
def test_overfitting_IO():
# Simple test to try and quickly overfit the morphologizer - ensuring the ML models work correctly
nlp = English()
nlp.add_pipe("morphologizer")
train_examples = []
for inst in TRAIN_DATA:
train_examples.append(Example.from_dict(nlp.make_doc(inst[0]), inst[1]))
optimizer = nlp.initialize(get_examples=lambda: train_examples)
for i in range(50):
losses = {}
nlp.update(train_examples, sgd=optimizer, losses=losses)
assert losses["morphologizer"] < 0.00001
# test the trained model
test_text = "I like blue ham"
doc = nlp(test_text)
gold_morphs = ["Feat=N", "Feat=V", "", ""]
gold_pos_tags = ["NOUN", "VERB", "ADJ", ""]
assert [str(t.morph) for t in doc] == gold_morphs
assert [t.pos_ for t in doc] == gold_pos_tags
# Also test the results are still the same after IO
with make_tempdir() as tmp_dir:
nlp.to_disk(tmp_dir)
nlp2 = util.load_model_from_path(tmp_dir)
doc2 = nlp2(test_text)
assert [str(t.morph) for t in doc2] == gold_morphs
assert [t.pos_ for t in doc2] == gold_pos_tags
# Make sure that running pipe twice, or comparing to call, always amounts to the same predictions
texts = [
"Just a sentence.",
"Then one more sentence about London.",
"Here is another one.",
"I like London.",
]
batch_deps_1 = [doc.to_array([MORPH]) for doc in nlp.pipe(texts)]
batch_deps_2 = [doc.to_array([MORPH]) for doc in nlp.pipe(texts)]
no_batch_deps = [doc.to_array([MORPH]) for doc in [nlp(text) for text in texts]]
assert_equal(batch_deps_1, batch_deps_2)
assert_equal(batch_deps_1, no_batch_deps)
# Test without POS
nlp.remove_pipe("morphologizer")
nlp.add_pipe("morphologizer")
for example in train_examples:
for token in example.reference:
token.pos_ = ""
optimizer = nlp.initialize(get_examples=lambda: train_examples)
for i in range(50):
losses = {}
nlp.update(train_examples, sgd=optimizer, losses=losses)
assert losses["morphologizer"] < 0.00001
# Test the trained model
test_text = "I like blue ham"
doc = nlp(test_text)
gold_morphs = ["Feat=N", "Feat=V", "", ""]
gold_pos_tags = ["", "", "", ""]
assert [str(t.morph) for t in doc] == gold_morphs
assert [t.pos_ for t in doc] == gold_pos_tags
# Test overwrite+extend settings
# (note that "" is unset, "_" is set and empty)
morphs = ["Feat=V", "Feat=N", "_"]
doc = Doc(nlp.vocab, words=["blue", "ham", "like"], morphs=morphs)
orig_morphs = [str(t.morph) for t in doc]
orig_pos_tags = [t.pos_ for t in doc]
morphologizer = nlp.get_pipe("morphologizer")
# don't overwrite or extend
morphologizer.cfg["overwrite"] = False
doc = morphologizer(doc)
assert [str(t.morph) for t in doc] == orig_morphs
assert [t.pos_ for t in doc] == orig_pos_tags
# overwrite and extend
morphologizer.cfg["overwrite"] = True
morphologizer.cfg["extend"] = True
doc = Doc(nlp.vocab, words=["I", "like"], morphs=["Feat=A|That=A|This=A", ""])
doc = morphologizer(doc)
assert [str(t.morph) for t in doc] == ["Feat=N|That=A|This=A", "Feat=V"]
# extend without overwriting
morphologizer.cfg["overwrite"] = False
morphologizer.cfg["extend"] = True
doc = Doc(nlp.vocab, words=["I", "like"], morphs=["Feat=A|That=A|This=A", "That=B"])
doc = morphologizer(doc)
assert [str(t.morph) for t in doc] == ["Feat=A|That=A|This=A", "Feat=V|That=B"]
# overwrite without extending
morphologizer.cfg["overwrite"] = True
morphologizer.cfg["extend"] = False
doc = Doc(nlp.vocab, words=["I", "like"], morphs=["Feat=A|That=A|This=A", ""])
doc = morphologizer(doc)
assert [str(t.morph) for t in doc] == ["Feat=N", "Feat=V"]
# Test with unset morph and partial POS
nlp.remove_pipe("morphologizer")
nlp.add_pipe("morphologizer")
for example in train_examples:
for token in example.reference:
if token.text == "ham":
token.pos_ = "NOUN"
else:
token.pos_ = ""
token.set_morph(None)
optimizer = nlp.initialize(get_examples=lambda: train_examples)
assert nlp.get_pipe("morphologizer").labels is not None
for i in range(50):
losses = {}
nlp.update(train_examples, sgd=optimizer, losses=losses)
assert losses["morphologizer"] < 0.00001
# Test the trained model
test_text = "I like blue ham"
doc = nlp(test_text)
gold_morphs = ["", "", "", ""]
gold_pos_tags = ["NOUN", "NOUN", "NOUN", "NOUN"]
assert [str(t.morph) for t in doc] == gold_morphs
assert [t.pos_ for t in doc] == gold_pos_tags
def test_save_activations():
nlp = English()
morphologizer = cast(TrainablePipe, nlp.add_pipe("morphologizer"))
train_examples = []
for inst in TRAIN_DATA:
train_examples.append(Example.from_dict(nlp.make_doc(inst[0]), inst[1]))
nlp.initialize(get_examples=lambda: train_examples)
doc = nlp("This is a test.")
assert "morphologizer" not in doc.activations
morphologizer.save_activations = True
doc = nlp("This is a test.")
assert "morphologizer" in doc.activations
assert set(doc.activations["morphologizer"].keys()) == {
"label_ids",
"probabilities",
}
assert doc.activations["morphologizer"]["probabilities"].shape == (5, 6)
assert doc.activations["morphologizer"]["label_ids"].shape == (5,)