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* Store activations in Doc when `store_activations` is enabled This change adds the new `activations` attribute to `Doc`. This attribute can be used by trainable pipes to store their activations, probabilities, and guesses for downstream users. As an example, this change modifies the `tagger` and `senter` pipes to add an `store_activations` option. When this option is enabled, the probabilities and guesses are stored in `set_annotations`. * Change type of `store_activations` to `Union[bool, List[str]]` When the value is: - A bool: all activations are stored when set to `True`. - A List[str]: the activations named in the list are stored * Formatting fixes in Tagger * Support store_activations in spancat and morphologizer * Make Doc.activations type visible to MyPy * textcat/textcat_multilabel: add store_activations option * trainable_lemmatizer/entity_linker: add store_activations option * parser/ner: do not currently support returning activations * Extend tagger and senter tests So that they, like the other tests, also check that we get no activations if no activations were requested. * Document `Doc.activations` and `store_activations` in the relevant pipes * Start errors/warnings at higher numbers to avoid merge conflicts Between the master and v4 branches. * Add `store_activations` to docstrings. * Replace store_activations setter by set_store_activations method Setters that take a different type than what the getter returns are still problematic for MyPy. Replace the setter by a method, so that type inference works everywhere. * Use dict comprehension suggested by @svlandeg * Revert "Use dict comprehension suggested by @svlandeg" This reverts commit6e7b958f70
. * EntityLinker: add type annotations to _add_activations * _store_activations: make kwarg-only, remove doc_scores_lens arg * set_annotations: add type annotations * Apply suggestions from code review Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * TextCat.predict: return dict * Make the `TrainablePipe.store_activations` property a bool This means that we can also bring back `store_activations` setter. * Remove `TrainablePipe.activations` We do not need to enumerate the activations anymore since `store_activations` is `bool`. * Add type annotations for activations in predict/set_annotations * Rename `TrainablePipe.store_activations` to `save_activations` * Error E1400 is not used anymore This error was used when activations were still `Union[bool, List[str]]`. * Change wording in API docs after store -> save change * docs: tag (save_)activations as new in spaCy 4.0 * Fix copied line in morphologizer activations test * Don't train in any test_save_activations test * Rename activations - "probs" -> "probabilities" - "guesses" -> "label_ids", except in the edit tree lemmatizer, where "guesses" -> "tree_ids". * Remove unused W400 warning. This warning was used when we still allowed the user to specify which activations to save. * Formatting fixes Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Replace "kb_ids" by a constant * spancat: replace a cast by an assertion * Fix EOF spacing * Fix comments in test_save_activations tests * Do not set RNG seed in activation saving tests * Revert "spancat: replace a cast by an assertion" This reverts commit0bd5730d16
. Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
208 lines
7.1 KiB
Cython
208 lines
7.1 KiB
Cython
# cython: infer_types=True, profile=True, binding=True
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from typing import Dict, Iterable, Optional, Callable, List, Union
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from itertools import islice
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import srsly
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from thinc.api import Model, SequenceCategoricalCrossentropy, Config
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from thinc.types import Floats2d, Ints1d
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from ..tokens.doc cimport Doc
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from .tagger import ActivationsT, Tagger
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from ..language import Language
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from ..errors import Errors
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from ..scorer import Scorer
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from ..training import validate_examples, validate_get_examples
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from ..util import registry
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from .. import util
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# See #9050
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BACKWARD_OVERWRITE = False
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default_model_config = """
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[model]
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@architectures = "spacy.Tagger.v2"
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[model.tok2vec]
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@architectures = "spacy.HashEmbedCNN.v2"
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pretrained_vectors = null
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width = 12
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depth = 1
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embed_size = 2000
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window_size = 1
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maxout_pieces = 2
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subword_features = true
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"""
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DEFAULT_SENTER_MODEL = Config().from_str(default_model_config)["model"]
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@Language.factory(
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"senter",
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assigns=["token.is_sent_start"],
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default_config={
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"model": DEFAULT_SENTER_MODEL,
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"overwrite": False,
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"scorer": {"@scorers": "spacy.senter_scorer.v1"},
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"save_activations": False,
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},
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default_score_weights={"sents_f": 1.0, "sents_p": 0.0, "sents_r": 0.0},
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)
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def make_senter(nlp: Language,
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name: str,
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model: Model,
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overwrite: bool,
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scorer: Optional[Callable],
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save_activations: bool):
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return SentenceRecognizer(nlp.vocab, model, name, overwrite=overwrite, scorer=scorer, save_activations=save_activations)
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def senter_score(examples, **kwargs):
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def has_sents(doc):
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return doc.has_annotation("SENT_START")
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results = Scorer.score_spans(examples, "sents", has_annotation=has_sents, **kwargs)
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del results["sents_per_type"]
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return results
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@registry.scorers("spacy.senter_scorer.v1")
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def make_senter_scorer():
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return senter_score
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class SentenceRecognizer(Tagger):
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"""Pipeline component for sentence segmentation.
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DOCS: https://spacy.io/api/sentencerecognizer
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"""
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def __init__(
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self,
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vocab,
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model,
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name="senter",
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*,
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overwrite=BACKWARD_OVERWRITE,
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scorer=senter_score,
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save_activations: bool = False,
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):
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"""Initialize a sentence recognizer.
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vocab (Vocab): The shared vocabulary.
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model (thinc.api.Model): The Thinc Model powering the pipeline component.
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name (str): The component instance name, used to add entries to the
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losses during training.
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scorer (Optional[Callable]): The scoring method. Defaults to
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Scorer.score_spans for the attribute "sents".
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save_activations (bool): save model activations in Doc when annotating.
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DOCS: https://spacy.io/api/sentencerecognizer#init
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"""
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self.vocab = vocab
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self.model = model
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self.name = name
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self._rehearsal_model = None
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self.cfg = {"overwrite": overwrite}
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self.scorer = scorer
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self.save_activations = save_activations
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@property
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def labels(self):
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"""RETURNS (Tuple[str]): The labels."""
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# labels are numbered by index internally, so this matches GoldParse
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# and Example where the sentence-initial tag is 1 and other positions
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# are 0
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return tuple(["I", "S"])
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@property
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def hide_labels(self):
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return True
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@property
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def label_data(self):
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return None
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def set_annotations(self, docs: Iterable[Doc], activations: ActivationsT):
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"""Modify a batch of documents, using pre-computed scores.
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docs (Iterable[Doc]): The documents to modify.
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activations (ActivationsT): The activations used for setting annotations, produced by SentenceRecognizer.predict.
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DOCS: https://spacy.io/api/sentencerecognizer#set_annotations
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"""
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batch_tag_ids = activations["label_ids"]
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if isinstance(docs, Doc):
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docs = [docs]
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cdef Doc doc
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cdef bint overwrite = self.cfg["overwrite"]
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for i, doc in enumerate(docs):
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if self.save_activations:
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doc.activations[self.name] = {}
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for act_name, acts in activations.items():
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doc.activations[self.name][act_name] = acts[i]
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doc_tag_ids = batch_tag_ids[i]
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if hasattr(doc_tag_ids, "get"):
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doc_tag_ids = doc_tag_ids.get()
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for j, tag_id in enumerate(doc_tag_ids):
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if doc.c[j].sent_start == 0 or overwrite:
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if tag_id == 1:
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doc.c[j].sent_start = 1
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else:
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doc.c[j].sent_start = -1
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def get_loss(self, examples, scores):
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"""Find the loss and gradient of loss for the batch of documents and
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their predicted scores.
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examples (Iterable[Examples]): The batch of examples.
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scores: Scores representing the model's predictions.
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RETURNS (Tuple[float, float]): The loss and the gradient.
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DOCS: https://spacy.io/api/sentencerecognizer#get_loss
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"""
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validate_examples(examples, "SentenceRecognizer.get_loss")
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labels = self.labels
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loss_func = SequenceCategoricalCrossentropy(names=labels, normalize=False)
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truths = []
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for eg in examples:
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eg_truth = []
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for x in eg.get_aligned("SENT_START"):
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if x is None:
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eg_truth.append(None)
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elif x == 1:
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eg_truth.append(labels[1])
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else:
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# anything other than 1: 0, -1, -1 as uint64
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eg_truth.append(labels[0])
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truths.append(eg_truth)
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d_scores, loss = loss_func(scores, truths)
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if self.model.ops.xp.isnan(loss):
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raise ValueError(Errors.E910.format(name=self.name))
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return float(loss), d_scores
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def initialize(self, get_examples, *, nlp=None):
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"""Initialize the pipe for training, using a representative set
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of data examples.
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get_examples (Callable[[], Iterable[Example]]): Function that
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returns a representative sample of gold-standard Example objects.
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nlp (Language): The current nlp object the component is part of.
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DOCS: https://spacy.io/api/sentencerecognizer#initialize
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"""
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validate_get_examples(get_examples, "SentenceRecognizer.initialize")
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util.check_lexeme_norms(self.vocab, "senter")
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doc_sample = []
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label_sample = []
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assert self.labels, Errors.E924.format(name=self.name)
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for example in islice(get_examples(), 10):
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doc_sample.append(example.x)
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gold_tags = example.get_aligned("SENT_START")
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gold_array = [[1.0 if tag == gold_tag else 0.0 for tag in self.labels] for gold_tag in gold_tags]
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label_sample.append(self.model.ops.asarray(gold_array, dtype="float32"))
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assert len(doc_sample) > 0, Errors.E923.format(name=self.name)
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assert len(label_sample) > 0, Errors.E923.format(name=self.name)
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self.model.initialize(X=doc_sample, Y=label_sample)
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def add_label(self, label, values=None):
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raise NotImplementedError
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