Commit Graph

478 Commits

Author SHA1 Message Date
Matthew Honnibal
1a65c5b7af Update develop from master 2019-09-08 18:21:41 +02:00
adrianeboyd
aec755d3a3 Modify retokenizer to use span root attributes (#4219)
* Modify retokenizer to use span root attributes

* tag/pos/morph are set to root tag/pos/morph

* lemma and norm are reset and end up as orth (not ideal, but better
than orth of first token)

* Also handle individual merge case

* Add test

* Attempt to handle ent_iob and ent_type in merges

* Fix check for whether B-ENT should become I-ENT

* Move IOB consistency check to after attrs

Move all IOB consistency checks after attrs are set and simplify to
check entire document, modifying I to B at the beginning of the document
or if the entity type of the previous token isn't the same.

* Move IOB consistency check for single merge

Move IOB consistency check after the token array is compressed for the
single merge case.

* Update spacy/tokens/_retokenize.pyx

Co-Authored-By: Matthew Honnibal <honnibal+gh@gmail.com>

* Remove single vs. multiple merge distinction

Remove original single-instance `_merge()` and use `_bulk_merge()` (now
renamed `_merge()`) for all merges.

* Add out-of-bound check in previous entity check
2019-09-08 13:04:49 +02:00
Matthew Honnibal
c308cf3e3e
Merge branch 'master' into feature/lemmatizer 2019-08-25 13:52:27 +02:00
Sofie Van Landeghem
73b38c33e4 Small retokenizer fix (#4174) 2019-08-22 12:23:54 +02:00
Sofie Van Landeghem
01c5980187 Serialize POS attribute when doc.is_tagged (#4092)
* fix and unit test for issue 3959

* additional unit test for manifestation of the same (resolved) bug
2019-08-21 21:59:30 +02:00
Matthew Honnibal
bcd08f20af Merge changes from master 2019-08-21 14:18:52 +02:00
Sofie Van Landeghem
0ba1b5eebc CLI scripts for entity linking (wikipedia & generic) (#4091)
* document token ent_kb_id

* document span kb_id

* update pipeline documentation

* prior and context weights as bool's instead

* entitylinker api documentation

* drop for both models

* finish entitylinker documentation

* small fixes

* documentation for KB

* candidate documentation

* links to api pages in code

* small fix

* frequency examples as counts for consistency

* consistent documentation about tensors returned by predict

* add entity linking to usage 101

* add entity linking infobox and KB section to 101

* entity-linking in linguistic features

* small typo corrections

* training example and docs for entity_linker

* predefined nlp and kb

* revert back to similarity encodings for simplicity (for now)

* set prior probabilities to 0 when excluded

* code clean up

* bugfix: deleting kb ID from tokens when entities were removed

* refactor train el example to use either model or vocab

* pretrain_kb example for example kb generation

* add to training docs for KB + EL example scripts

* small fixes

* error numbering

* ensure the language of vocab and nlp stay consistent across serialization

* equality with =

* avoid conflict in errors file

* add error 151

* final adjustements to the train scripts - consistency

* update of goldparse documentation

* small corrections

* push commit

* turn kb_creator into CLI script (wip)

* proper parameters for training entity vectors

* wikidata pipeline split up into two executable scripts

* remove context_width

* move wikidata scripts in bin directory, remove old dummy script

* refine KB script with logs and preprocessing options

* small edits

* small improvements to logging of EL CLI script
2019-08-13 15:38:59 +02:00
Sofie Van Landeghem
963ea5e8d0 Update lemma and vector information after splitting a token (#4097)
* fixing vector and lemma attributes after retokenizer.split

* fixing unit test with mockup tensor

* xp instead of numpy
2019-08-08 15:09:44 +02:00
Sofie Van Landeghem
ad09b0d6f3 fetch norm from lex if necessary for matching (#4080) 2019-08-05 23:51:04 +02:00
Matthew Honnibal
944a66c326 Add span.tensor and token.tensor attributes 2019-08-01 18:30:50 +02:00
Ines Montani
d5bce35fb1 Fix bug in Span.similarity when called via hook 2019-07-27 15:33:27 +02:00
Ines Montani
109b5e1798 Fix bug in Token.similarity when called via hook 2019-07-27 15:26:01 +02:00
Sofie Van Landeghem
ba02957c80 Fix dependency copy for as_doc (#3969)
* failing unit test for issue 3962

* attempt to fix Issue #3962

* create artificial unit test example

* using length instead of self.length

* sp

* reformat with black

* find better ancestor within span and use generic 'dep'

* attach to span.root if there is no appropriate ancestor

* comment span text

* clean up ancestor code

* reconstruct dep tree to keep same number of sentences
2019-07-23 18:28:54 +02:00
Ines Montani
673c864a06
Fix doc.count_by functionality (#3950)
Fix doc.count_by functionality
2019-07-11 13:44:00 +02:00
svlandeg
349107daa3 cleanup 2019-07-11 13:09:22 +02:00
svlandeg
0f0f07318a counter instead of preshcounter 2019-07-11 13:05:53 +02:00
Matthew Honnibal
0491a8e7c8 Reformat 2019-07-11 11:49:36 +02:00
Matthew Honnibal
bd3c3f342b Fix _serialize 2019-07-11 11:48:55 +02:00
svlandeg
e080412385 tracked the bug down to PreshCounter.inc - still unclear what goes wrong 2019-07-11 01:53:06 +02:00
Matthew Honnibal
b94c5443d9 Rename Binder->DocBox, and improve it. 2019-07-10 19:37:20 +02:00
Matthew Honnibal
3d18600c05 Return True from doc.is_... when no ambiguity
* Make doc.is_sentenced return True if len(doc) < 2.

* Make doc.is_nered return True if len(doc) == 0, for consistency.

Closes #3934
2019-07-10 19:21:42 +02:00
Ines Montani
6ba5ddbd5f
Merge pull request #3864 from svlandeg/feature/nel-wiki
Entity linking using Wikipedia & Wikidata
2019-07-10 11:25:41 +02:00
Björn Böing
205c73a589 Update tokenizer and doc init example (#3939)
* Fix Doc.to_json hyperlink

* Update tokenizer and doc init examples

* Change "matchin rules" to "punctuation rules"

* Auto-format
2019-07-10 10:16:48 +02:00
svlandeg
8608685543 ensure Span.as_doc keeps the entity links + unit test 2019-06-25 15:28:51 +02:00
Ines Montani
8baff1c7c0
💫 Improve introspection of custom extension attributes (#3729)
* Add custom __dir__ to Underscore (see #3707)

* Make sure custom extension methods keep their docstrings (see #3707)

* Improve tests

* Prepend note on partial to docstring (see #3707)

* Remove print statement

* Handle cases where docstring is None
2019-05-12 00:53:11 +02:00
Sofie
a4a6bfa4e1
Merge branch 'master' into feature/el-framework 2019-03-26 11:00:02 +01:00
Ines Montani
06bf130890 💫 Add better and serializable sentencizer (#3471)
* Add better serializable sentencizer component

* Replace default factory

* Add tests

* Tidy up

* Pass test

* Update docs
2019-03-23 15:45:02 +01:00
svlandeg
5b1cd49222 error msg and unit tests for setting kb_id on span 2019-03-22 12:05:35 +01:00
svlandeg
feb71e15fd hash the entity name 2019-03-22 11:36:44 +01:00
svlandeg
735fc2a735 annotate kb_id through ents in doc 2019-03-22 11:36:44 +01:00
svlandeg
d849eb2455 adding kb_id as field to token, el as nlp pipeline component 2019-03-22 11:34:46 +01:00
Matthew Honnibal
72889a16d5 Fix similarity calculation if vectors are on GPU (#3440) 2019-03-20 12:09:59 +01:00
Ines Montani
278e9d2eb0 Merge branch 'master' into feature/lemmatizer 2019-03-16 13:44:22 +01:00
Sofie
c45ed32c74 label in span not writable anymore (#3408)
* label in span not writable anymore

* more explicit unit test and error message for readonly label

* bit more explanation (view)

* error msg tailored to specific case

* fix None case
2019-03-15 00:46:45 +01:00
Matthew Honnibal
b0b990e405 Fix token.conjuncts (closes #795) (#3392)
* Implement conjuncts method

* Add span.conjuncts property

* Un-xfail token.conjuncts tests

* Update docs for token.conjuncts and span.conjuncts

* Fix merge error in token.conjuncts
2019-03-11 17:05:45 +01:00
Ines Montani
47e9c274ef Tidy up property code style (#3391)
Use decorator if properties only have a getter and existing syntax if there's getter and setter
2019-03-11 15:59:09 +01:00
Ines Montani
ebcf2bb1c3 Add Doc.lang and Doc.lang_ 2019-03-11 14:21:40 +01:00
Ines Montani
7c05ca01e8 💫 Support mutable default values for extension attributes (#3389)
* Support mutable default values in extensions

* Update documentation
2019-03-11 12:50:44 +01:00
Matthew Honnibal
80b94313b6 💫 Fix interaction of lemmatizer and tokenizer exceptions (#3388)
Closes #2203. Closes #3268.

Lemmas set from outside the `Morphology` class were being overwritten. The result was especially confusing when deserialising, as it meant some lemmas could change when storing and retrieving a `Doc` object.

This PR applies two fixes:

1) When we go to set the lemma in the `Morphology` class, first check whether a lemma is already set. If so, don't overwrite.
2) When we load with `doc.from_array()`, take care to apply the `TAG` field first. This allows other fields to overwrite the `TAG` implied properties, if they're provided explicitly (e.g. the `LEMMA`).

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
2019-03-11 01:31:21 +01:00
Ines Montani
7ba3a5d95c 💫 Make serialization methods consistent (#3385)
* Make serialization methods consistent

exclude keyword argument instead of random named keyword arguments and deprecation handling

* Update docs and add section on serialization fields
2019-03-10 19:16:45 +01:00
Matthew Honnibal
d6eaa71afc Handle scalar values in doc.from_array() 2019-03-10 16:54:03 +01:00
Matthew Honnibal
4e80fc41ad Make doc.from_array() consistent with doc.to_array(). Closes #3382 2019-03-10 15:50:48 +01:00
Ines Montani
0426689db8 💫 Improve Doc.to_json and add Doc.is_nered (#3381)
* Use default return instead of else

* Add Doc.is_nered to indicate if entities have been set

* Add properties in Doc.to_json if they were set, not if they're available

This way, if a processed Doc exports "pos": None, it means that the tag was explicitly unset. If it exports "ents": [], it means that entity annotations are available but that this document doesn't contain any entities. Before, this would have been unclear and problematic for training.
2019-03-10 15:24:34 +01:00
Matthew Honnibal
41a3016019 Refactor morphologizer class map 2019-03-09 20:55:33 +01:00
Matthew Honnibal
bba5f57f91 Add method to export utf8 array to Doc 2019-03-09 11:50:27 +00:00
Matthew Honnibal
4cf897e8e1 Update from develop 2019-03-08 16:56:54 +01:00
Ines Montani
296446a1c8
Tidy up and improve docs and docstrings (#3370)
<!--- Provide a general summary of your changes in the title. -->

## Description
* tidy up and adjust Cython code to code style
* improve docstrings and make calling `help()` nicer
* add URLs to new docs pages to docstrings wherever possible, mostly to user-facing objects
* fix various typos and inconsistencies in docs

### Types of change
enhancement, docs

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
2019-03-08 11:42:26 +01:00
Matthew Honnibal
9dceb97570 Extend morphanalysis API 2019-03-08 01:38:34 +01:00
Matthew Honnibal
3300e3d7ab Implement more MorphAnalysis API 2019-03-08 00:09:16 +01:00
Matthew Honnibal
a40d73cb2a Build out morphological analysis API 2019-03-07 21:59:25 +01:00