Commit Graph

2475 Commits

Author SHA1 Message Date
Raphael Mitsch
6f9e2ca81f
Ignore overrides for pipe names in config argument (#10779)
* Pipe name override in config: added check with warning, added removal of name override from config, extended tests.

* Pipoe name override in config: added pytest UserWarning.

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-05-12 11:46:08 +02:00
Adriane Boyd
b65d652881
Override SpanGroups.setdefault to provide default SpanGroup (#10772)
* Fix mistake in SpanGroup API docs

* Restrict SpanGroups.setdefault to SpanGroup only

* Refactor to support default span iterable
2022-05-12 10:06:25 +02:00
Raphael Mitsch
2904359685
Allow assets to be optional in spacy project (#10714)
* Allow assets to be optional in spacy project: draft for optional flag/download_all options.

* Allow assets to be optional in spacy project: added OPTIONAL_DEFAULT reflecting default asset optionality.

* Allow assets to be optional in spacy project: renamed --all to --extra.

* Allow assets to be optional in spacy project: included optional flag in project config test.

* Allow assets to be optional in spacy project: added documentation.

* Allow assets to be optional in spacy project: fixing deprecated --all reference.

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Allow assets to be optional in spacy project: fixed project_assets() docstring.

* Allow assets to be optional in spacy project: adjusted wording in justification of optional assets.

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Allow assets to be optional in spacy project: switched to  as keyword in project.yml. Updated docs.

* Allow assets to be optional in spacy project: updated comment.

* Allow assets to be optional in spacy project: replacing 'optional' with 'extra' in output.

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Allow assets to be optional in spacy project: replacing 'optional' with 'extra' in docstring..

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Allow assets to be optional in spacy project: replacing 'optional' with 'extra' in test..

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Allow assets to be optional in spacy project: replacing 'optional' with 'extra' in test.

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Allow assets to be optional in spacy project: renamed OPTIONAL_DEFAULT to EXTRA_DEFAULT.

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-05-10 10:40:11 +02:00
Sofie Van Landeghem
1543558d08
Add test for old architectures (#10751)
* add v1 and v2 tests for tok2vec architectures

* textcat architectures are not "layers"

* test older textcat architectures

* test older parser architecture
2022-05-10 08:24:42 +02:00
Adriane Boyd
10377fb945
Set version to v3.3.0 (#10614)
* Set version to v3.3.0

* Revert "Temporarily skip tests that require models/compat"

This reverts commit e422101e00.
2022-04-28 13:07:49 +02:00
harmbuisman
c066fb8a4e
#10672: fixes displacy output for manual unsorted entities (#10673)
* #10672: fixes displacy output for manual unsorted entities

* #10672: removed unused import

* fix prettier formatting

Co-authored-by: Harm Buisman <h.buisman@iknl.nl>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-04-27 09:51:58 +02:00
Sofie Van Landeghem
b3717ba53a
removing print statements from the test suite (#10712) 2022-04-27 09:14:25 +02:00
Adriane Boyd
455f089c9b
Support exclude in Doc.from_docs (#10689)
* Support exclude in Doc.from_docs

* Update API docs

* Add new tag to docs
2022-04-25 18:19:03 +02:00
Adriane Boyd
0e71bd973f
Return doc offsets in Matcher on spans (#10576)
The returned match offsets were only adjusted for `as_spans`, not
generally. Because the `on_match` callbacks are always applied to the
doc, the `Matcher` matches on spans should consistently use the doc
offsets.
2022-04-15 15:34:58 +02:00
Joachim Fainberg
4e1716223c
displaCy: Avoid increasing levels for identical arcs (#10639)
* Test for arc levels for identical arcs

Also moves the test in order with the other numbered tests.

* displaCy: filter identical arcs

Avoid increased levels due to identical arcs by first
filtering any identical arcs.

* Sort keys before filtering

Manual entry with keys out of order would previously become
different tuples and therefore not filtered correctly.

Co-authored-by: Joachim Fainberg <joachimfainberg@Joachims-MBP.lan>
2022-04-14 16:48:00 +02:00
Madeesh Kannan
9ba3e1cb2f
Basic tests for the Tamil language (#10629)
* Add basic tests for Tamil (ta)

* Add comment
Remove superfluous condition

* Remove superfluous call to `pipe`
Instantiate new tokenizer for special case
2022-04-07 14:47:37 +02:00
Joachim Fainberg
b91255a454
displacy: avoid overlapping arcs in manual mode (#10534)
* Added test for overlapping arcs

* Provide distinct levels to overlapping arcs

* Update return type hint for get_levels

* Improved formatting spacy/displacy/render.py

Co-authored-by: Ines Montani <ines@ines.io>

Co-authored-by: Joachim Fainberg <joachimfainberg@Joachims-MacBook-Pro.local>
Co-authored-by: Ines Montani <ines@ines.io>
2022-04-05 09:08:02 +02:00
Adriane Boyd
849bef2de6
Merge pull request #10596 from adrianeboyd/chore/v3.3.0.dev0
Set version to v3.3.0.dev0
2022-04-04 09:18:07 +02:00
Adriane Boyd
e422101e00 Temporarily skip tests that require models/compat 2022-04-01 11:09:28 +02:00
Adriane Boyd
ca54de27bb
Support more internal methods for SpanGroup (#10476)
* Added new convenience cython functions to SpanGroup to avoid unnecessary allocation/deallocation of objects

* Replaced sorting in has_overlap with C++ for efficiency. Also, added a test for has_overlap

* Added a method to efficiently merge SpanGroups

* Added __delitem__, __add__ and __iadd__. Also, allowed to pass span lists to merge function. Replaced extend() body with call to merge

* Renamed merge to concat and added missing things to documentation

* Added operator+ and operator += in the documentation

* Added a test for Doc deallocation

* Update spacy/tokens/span_group.pyx

* Updated SpanGroup tests to use new span list comparison function rather than assert_span_list_equal, eliminating the need to have a separate assert_not_equal fnction

* Fixed typos in SpanGroup documentation

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Minor changes requested by Sofie: rearranged import statements. Added new=3.2.1 tag to SpanGroup.__setitem__ documentation

* SpanGroup: moved repetitive list index check/adjustment in a separate function

* Turn off formatting that hurts readability spacy/tests/doc/test_span_group.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Remove formatting that hurts readability spacy/tests/doc/test_span_group.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Turn off formatting that hurts readability in spacy/tests/doc/test_span_group.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Support more internal methods for SpanGroup

Add support for:

* `__setitem__`
* `__delitem__`
* `__iadd__`: for `SpanGroup` or `Iterable[Span]`
* `__add__`: for `SpanGroup` only

Adapted from #9698 with the scope limited to the magic methods.

* Use v3.3 as new version in docs

* Add new tag to SpanGroup.copy in API docs

* Remove duplicate import

* Apply suggestions from code review

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Remaining suggestions and formatting

Co-authored-by: nrodnova <nrodnova@hotmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Natalia Rodnova <4512370+nrodnova@users.noreply.github.com>
2022-04-01 09:56:26 +02:00
Daniël de Kok
c90dd6f265
Alignment: use a simplified ragged type for performance (#10319)
* Alignment: use a simplified ragged type for performance

This introduces the AlignmentArray type, which is a simplified version
of Ragged that performs better on the simple(r) indexing performed for
alignment.

* AlignmentArray: raise an error when using unsupported index

* AlignmentArray: move error messages to Errors

* AlignmentArray: remove simlified ... with simplifications

* AlignmentArray: fix typo that broke a[n:n] indexing
2022-04-01 09:02:06 +02:00
Yunus Atahan
36d3af3013
Fixed typo in Turkish lang. (#10582)
* added failing test case for the issue.

* Fixed typo.

* fixed typo in test.

* added corrected typo word into test_tr_lex_attrs_capitals as param. Test passes. Also tried and confirmed that test is failing after fixing the typo in the test case I wrote. Deleted the test case for typo.

Co-authored-by: Yunus Atahan <yunus.atahan@trmotor.local>
2022-03-30 13:16:08 +02:00
Adriane Boyd
f98b41c390
Add vector deduplication (#10551)
* Add vector deduplication

* Add `Vocab.deduplicate_vectors()`
* Always run deduplication in `spacy init vectors`
* Clean up a few vector-related error messages and docs examples

* Always unique with numpy

* Fix types
2022-03-30 08:54:23 +02:00
Adriane Boyd
85778dfcf4
Add edit tree lemmatizer (#10231)
* Add edit tree lemmatizer

Co-authored-by: Daniël de Kok <me@danieldk.eu>

* Hide edit tree lemmatizer labels

* Use relative imports

* Switch to single quotes in error message

* Type annotation fixes

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Reformat edit_tree_lemmatizer with black

* EditTreeLemmatizer.predict: take Iterable

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Validate edit trees during deserialization

This change also changes the serialized representation. Rather than
mirroring the deep C structure, we use a simple flat union of the match
and substitution node types.

* Move edit_trees to _edit_tree_internals

* Fix invalid edit tree format error message

* edit_tree_lemmatizer: remove outdated TODO comment

* Rename factory name to trainable_lemmatizer

* Ignore type instead of casting truths to List[Union[Ints1d, Floats2d, List[int], List[str]]] for thinc v8.0.14

* Switch to Tagger.v2

* Add documentation for EditTreeLemmatizer

* docs: Fix 3.2 -> 3.3 somewhere

* trainable_lemmatizer documentation fixes

* docs: EditTreeLemmatizer is in edit_tree_lemmatizer.py

Co-authored-by: Daniël de Kok <me@danieldk.eu>
Co-authored-by: Daniël de Kok <me@github.danieldk.eu>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-03-28 11:13:50 +02:00
github-actions[bot]
98ed941c39
Auto-format code with black (#10550)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2022-03-28 10:44:46 +02:00
Adriane Boyd
3711af74e5
Add tokenizer option to allow Matcher handling for all rules (#10452)
* Add tokenizer option to allow Matcher handling for all rules

Add tokenizer option `with_faster_rules_heuristics` that determines
whether the special cases applied by the internal `Matcher` are filtered
by whether they contain affixes or space. If `True` (default), the rules
are filtered to prioritize speed over rare edge cases. If `False`, all
rules are included in the final `Matcher`-based pass over the doc.

* Reset all caches when reloading special cases

* Revert "Reset all caches when reloading special cases"

This reverts commit 4ef6bd171d.

* Initialize max_length properly

* Add new tag to API docs

* Rename to faster heuristics
2022-03-24 13:21:32 +01:00
Adriane Boyd
e908a67829
Handle unknown tags in KoreanTokenizer tag map (#10536) 2022-03-24 11:25:36 +01:00
github-actions[bot]
bf1cf77a5b
Auto-format code with black (#10518)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2022-03-21 09:21:24 +01:00
Lj Miranda
a79cd3542b
Add displacy support for overlapping Spans (#10332)
* Fix docstring for EntityRenderer

* Add warning in displacy if doc.spans are empty

* Implement parse_spans converter

One notable change here is that the default spans_key is sc, and
it's set by the user through the options.

* Implement SpanRenderer

Here, I implemented a SpanRenderer that looks similar to the
EntityRenderer except for some templates.  The spans_key, by default, is
set to sc, but can be configured in the options (see parse_spans). The
way I rendered these spans is per-token, i.e., I first check if each
token (1) belongs to a given span type and (2) a starting token of a
given span type. Once I have this information, I render them into the
markup.

* Fix mypy issues on typing

* Add tests for displacy spans support

* Update colors from RGB to hex

Co-authored-by: Ines Montani <ines@ines.io>

* Remove unnecessary CSS properties

* Add documentation for website

* Remove unnecesasry scripts

* Update wording on the documentation

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Put typing dependency on top of file

* Put back z-index so that spans overlap properly

* Make warning more explicit for spans_key

Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-03-16 18:14:34 +01:00
Daniël de Kok
e5debc68e4
Tagger: use unnormalized probabilities for inference (#10197)
* Tagger: use unnormalized probabilities for inference

Using unnormalized softmax avoids use of the relatively expensive exp function,
which can significantly speed up non-transformer models (e.g. I got a speedup
of 27% on a German tagging + parsing pipeline).

* Add spacy.Tagger.v2 with configurable normalization

Normalization of probabilities is disabled by default to improve
performance.

* Update documentation, models, and tests to spacy.Tagger.v2

* Move Tagger.v1 to spacy-legacy

* docs/architectures: run prettier

* Unnormalized softmax is now a Softmax_v2 option

* Require thinc 8.0.14 and spacy-legacy 3.0.9
2022-03-15 14:15:31 +01:00
Edward
2eef47dd26
Save span candidates produced by spancat suggesters (#10413)
* Add save_candidates attribute

* Change spancat api

* Add unit test

* reimplement method to produce a list of doc

* Add method to docs

* Add new version tag

* Add intended use to docstring

* prettier formatting
2022-03-14 16:46:58 +01:00
Edward
b68bf43f5b
Add spans to doc.to_json (#10073)
* Add spans to to_json

* adjustments to_json

* Change docstring

* change doc key naming

* Update spacy/tokens/doc.pyx

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-03-14 15:47:57 +01:00
github-actions[bot]
1bbf232074
Auto-format code with black (#10479)
* Auto-format code with black

* Update spacy/lang/hsb/lex_attrs.py

Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-03-11 12:20:23 +01:00
Adriane Boyd
297dd82c86
Fix initial special cases for Tokenizer.explain (#10460)
Add the missing initial check for special cases to `Tokenizer.explain`
to align with `Tokenizer._tokenize_affixes`.
2022-03-11 10:50:47 +01:00
jnphilipp
5ca0dbae76
Add Lower Sorbian support. (#10431)
* Add support basic support for lower sorbian.

* Add some test for dsb.

* Update spacy/lang/dsb/examples.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-03-07 16:57:14 +01:00
Paul O'Leary McCann
61ba5450ff
Fix get_matching_ents (#10451)
* Fix get_matching_ents

Not sure what happened here - the code prior to this commit simply does
not work. It's already covered by entity linker tests, which were
succeeding in the NEL PR, but couldn't possibly succeed on master.

* Fix test

Test was indented inside another test and so doesn't seem to have been
running properly.
2022-03-07 16:56:57 +01:00
jnphilipp
7ed7908716
Add Upper Sorbian support. (#10432)
* Add support basic support for upper sorbian.

* Add tokenizer exceptions and tests.

* Update spacy/lang/hsb/examples.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-03-07 16:20:39 +01:00
Paul O'Leary McCann
91acc3ea75
Fix entity linker batching (#9669)
* Partial fix of entity linker batching

* Add import

* Better name

* Add `use_gold_ents` option, docs

* Change to v2, create stub v1, update docs etc.

* Fix error type

Honestly no idea what the right type to use here is.
ConfigValidationError seems wrong. Maybe a NotImplementedError?

* Make mypy happy

* Add hacky fix for init issue

* Add legacy pipeline entity linker

* Fix references to class name

* Add __init__.py for legacy

* Attempted fix for loss issue

* Remove placeholder V1

* formatting

* slightly more interesting train data

* Handle batches with no usable examples

This adds a test for batches that have docs but not entities, and a
check in the component that detects such cases and skips the update step
as thought the batch were empty.

* Remove todo about data verification

Check for empty data was moved further up so this should be OK now - the
case in question shouldn't be possible.

* Fix gradient calculation

The model doesn't know which entities are not in the kb, so it generates
embeddings for the context of all of them.

However, the loss does know which entities aren't in the kb, and it
ignores them, as there's no sensible gradient.

This has the issue that the gradient will not be calculated for some of
the input embeddings, which causes a dimension mismatch in backprop.
That should have caused a clear error, but with numpyops it was causing
nans to happen, which is another problem that should be addressed
separately.

This commit changes the loss to give a zero gradient for entities not in
the kb.

* add failing test for v1 EL legacy architecture

* Add nasty but simple working check for legacy arch

* Clarify why init hack works the way it does

* Clarify use_gold_ents use case

* Fix use gold ents related handling

* Add tests for no gold ents and fix other tests

* Use aligned ents function (not working)

This doesn't actually work because the "aligned" ents are gold-only. But
if I have a different function that returns the intersection, *then*
this will work as desired.

* Use proper matching ent check

This changes the process when gold ents are not used so that the
intersection of ents in the pred and gold is used.

* Move get_matching_ents to Example

* Use model attribute to check for legacy arch

* Rename flag

* bump spacy-legacy to lower 3.0.9

Co-authored-by: svlandeg <svlandeg@github.com>
2022-03-04 09:17:36 +01:00
Adriane Boyd
8e93fa8507
Fix Vectors.n_keys for floret vectors (#10394)
Fix `Vectors.n_keys` for floret vectors to match docstring description
and avoid W007 warnings in similarity methods.
2022-03-01 09:21:25 +01:00
github-actions[bot]
d637b34e2f
Auto-format code with black (#10377)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2022-02-25 10:00:21 +01:00
Adriane Boyd
b16da378bb
Re-remove universe tests from test suite (#10357) 2022-02-23 21:08:56 +01:00
kadarakos
249b97184d
Bugfixes and test for rehearse (#10347)
* fixing argument order for rehearse

* rehearse test for ner and tagger

* rehearse bugfix

* added test for parser

* test for multilabel textcat

* rehearse fix

* remove debug line

* Update spacy/tests/training/test_rehearse.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/tests/training/test_rehearse.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Kádár Ákos <akos@onyx.uvt.nl>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-02-23 16:10:05 +01:00
Daniël de Kok
78a8bec4d0
Make core projectivization functions cdef nogil (#10241)
* Make core projectivization methods cdef nogil

While profiling the parser, I noticed that relatively a lot of time is
spent in projectivization. This change rewrites the functions in the
core loops as cdef nogil for efficiency.

In C++-land, we use vector in place of Python lists and absent heads
are represented as -1 in place of None.

* _heads_to_c: add assertion

Validation should be performed by the caller, but this assertion ensures that
we are not reading/writing out of bounds with incorrect input.
2022-02-21 15:02:21 +01:00
Adriane Boyd
30030176ee
Update Korean defaults for Tokenizer (#10322)
Update Korean defaults for `Tokenizer` for tokenization following UD
Korean Kaist.
2022-02-21 10:26:19 +01:00
Adriane Boyd
f32ee2e533
Fix NER check in CoNLL-U converter (#10302)
* Fix NER check in CoNLL-U converter

Leave ents unset if no NER annotation is found in the MISC column.

* Revert to global rather than per-sentence NER check

* Update spacy/training/converters/conllu_to_docs.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-02-21 10:24:52 +01:00
Peter Baumgartner
3358fb9bdd
Miscellaneous Minor SpanGroups/DocBin Improvements (#10250)
* MultiHashEmbed vector docs correction

* doc copy span test

* ignore empty lists in DocBin.span_groups

* serialized empty list const + SpanGroups.is_empty

* add conditional deserial on from_bytes

* clean up + reorganize

* rm test

* add constant as class attribute

* rename to _EMPTY_BYTES

* Update spacy/tests/doc/test_span.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-02-21 10:24:15 +01:00
Adriane Boyd
f4c74764b8
Fix Tok2Vec for empty batches (#10324)
* Add test for tok2vec with vectors and empty docs

* Add shortcut for empty batch in Tok2Vec.predict

* Avoid types
2022-02-21 10:22:36 +01:00
github-actions[bot]
6de84c8757
Auto-format code with black (#10333)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2022-02-21 09:15:42 +01:00
Adriane Boyd
28ba31e793
Add whitespace and combined augmenters (#10170)
Add whitespace augmenter that inserts a single whitespace token into a
doc containing annotation used in core trained pipelines.

Add a combined augmenter that handles lowercasing, orth variants and
whitespace augmentation.
2022-02-17 15:54:09 +01:00
Sofie Van Landeghem
a16b14e591
Merge branch 'master' into copy/develop 2022-02-16 14:04:59 +01:00
github-actions[bot]
5adedb8587
Auto-format code with black (#10260)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2022-02-11 14:23:01 +01:00
Peter Baumgartner
ee662ec381
Raise error in spacy package when model name is not a valid python identifier (#10192)
* MultiHashEmbed vector docs correction

* raise error for invalid identifier as model name

* more succinct error message

* update success message

* permitted package name + double underscore

* clarify package name error

* clarify underscore run message

* tweak language + simplify underscore run

* cleanup underscore run warning

* spacing correction

* Update spacy/tests/test_cli.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-02-10 08:15:23 +01:00
Antti Ajanki
e9c26f2ee9
Add a noun chunker for Finnish (#10214)
with test cases
2022-02-08 08:44:11 +01:00
Sofie Van Landeghem
deb143fa70
Token sent attributes more consistent (#10164)
* remove duplicate line

* add sent start/end token attributes to the docs

* let has_annotation work with IS_SENT_END

* elif instead of if

* add has_annotation test for sent attributes

* fix typo

* remove duplicate is_sent_start entry in docs
2022-02-08 08:35:37 +01:00
Adriane Boyd
63e1e4e8f6
Fix debug data check for ents that cross sents (#10188)
* Fix debug data check for ents that cross sents

* Use aligned sent starts to have the same indices for the NER and sent
start annotation
* Add a temporary, insufficient hack for the case where a
sentence-initial reference token is split into multiple tokens in the
predicted doc, since `Example.get_aligned("SENT_START")` currently
aligns `True` to all the split tokens.

* Improve test example

* Use Example.get_aligned_sent_starts

* Add test for crossing entity
2022-02-07 08:53:30 +01:00
github-actions[bot]
91ccacea12
Auto-format code with black (#10209)
* Auto-format code with black

* add black requirement to dev dependencies and pin to 22.x

* ignore black dependency for comparison with setup.cfg

Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
Co-authored-by: svlandeg <svlandeg@github.com>
2022-02-06 16:30:30 +01:00
Sofie Van Landeghem
14513f82da
Merge pull request #10215 from explosion/master
update develop
2022-02-06 13:45:41 +01:00
Adriane Boyd
0668a449ba
Add Pipe.hide_labels to omit labels from pipeline meta (#10175) 2022-02-05 17:59:24 +01:00
Adriane Boyd
fef896ce49
Allow Example to align whitespace annotation (#10189)
Remove exception for whitespace tokens in `Example.get_aligned` so that
annotation on whitespace tokens is aligned in the same way as for
non-whitespace tokens.
2022-02-03 17:01:53 +01:00
Adriane Boyd
4f441dfa24
Fix infix as prefix in Tokenizer.explain (#10140)
* Fix infix as prefix in Tokenizer.explain

Update `Tokenizer.explain` to align with the `Tokenizer` algorithm:

* skip infix matches that are prefixes in the current substring

* Update tokenizer pseudocode in docs
2022-01-28 17:00:54 +01:00
github-actions[bot]
6d4db5c3c7
Auto-format code with black (#10106)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2022-01-21 10:01:10 +01:00
Sofie Van Landeghem
4465fe0306
Merge branch 'develop' into feature/master_copy 2022-01-20 13:36:17 +01:00
Duygu Altinok
47a2916801
Intify IOB (#9738)
* added iob to int

* added tests

* added iob strings

* added error

* blacked attrs

* Update spacy/tests/lang/test_attrs.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update spacy/attrs.pyx

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* added iob strings as global

* minor refinement with iob

* removed iob strings from token

* changed to uppercase

* cleaned and went back to master version

* imported iob from attrs

* Update and format errors

* Support and test both str and int ENT_IOB key

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-01-20 13:19:38 +01:00
Duygu Altinok
268ddf8a06
Add ENT_IOB key to Matcher (#9649)
* added new field

* added exception for IOb strings

* minor refinement to schema

* removed field

* fixed typo

* imported numeriacla val

* changed the code bit

* cosmetics

* added test for matcher

* set ents of moc docs

* added invalid pattern

* minor update to documentation

* blacked matcher

* added pattern validation

* add IOB vals to schema

* changed into test

* mypy compat

* cleaned left over

* added compat import

* changed type

* added compat import

* changed literal a bit

* went back to old

* made explicit type

* Update spacy/schemas.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update spacy/schemas.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update spacy/schemas.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-01-20 13:18:39 +01:00
Adriane Boyd
a55212fca0
Determine labels by factory name in debug data (#10079)
* Determine labels by factory name in debug data

For all components, return labels for all components with the
corresponding factory name rather than for only the default name.

For `spancat`, return labels as a dict keyed by `spans_key`.

* Refactor for typing

* Add test

* Use assert instead of cast, removed unneeded arg

* Mark test as slow
2022-01-20 11:42:52 +01:00
Richard Hudson
e9c6314539
Bugfix for similarity return types (#10051) 2022-01-20 11:40:46 +01:00
Daniël de Kok
50d2a2c930
User fewer Vector internals (#9879)
* Use Vectors.shape rather than Vectors.data.shape

* Use Vectors.size rather than Vectors.data.size

* Add Vectors.to_ops to move data between different ops

* Add documentation for Vector.to_ops
2022-01-18 17:14:35 +01:00
Adriane Boyd
4dfd559e55
Fix spaces in Doc.from_docs for empty docs (#10052)
Fix spaces in `Doc.from_docs(ensure_whitespace=True)` for cases where an
doc ending in whitespace is followed by an empty doc.
2022-01-18 17:12:42 +01:00
Paul O'Leary McCann
c28e33637b
Mark flaky spancat test so it doesn't fail the build (#10075)
* Mark flaky spancat test so it doesn't fail the build

* Skip, don't run and ignore
2022-01-18 09:36:28 +01:00
Natalia Rodnova
47ea6704f1
Span richcmp fix (#9956)
* Corrected Span's __richcmp__ implementation to take end, label and kb_id in consideration

* Updated test

* Updated test

* Removed formatting from a test for readability sake

* Use same tuples for all comparisons

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-01-17 11:17:49 +01:00
Adriane Boyd
add52935ff
Revert "Bump sudachipy version (#9917)" (#10071)
This reverts commit 58bdd8607b.
2022-01-17 10:38:37 +01:00
Paul O'Leary McCann
58bdd8607b
Bump sudachipy version (#9917)
* Edited Slovenian stop words list (#9707)

* Noun chunks for Italian (#9662)

* added it vocab

* copied portuguese

* added possessive determiner

* added conjed Nps

* added nmoded Nps

* test misc

* more examples

* fixed typo

* fixed parenth

* fixed comma

* comma fix

* added syntax iters

* fix some index problems

* fixed index

* corrected heads for test case

* fixed tets case

* fixed determiner gender

* cleaned left over

* added example with apostophe

* French NP review (#9667)

* adapted from pt

* added basic tests

* added fr vocab

* fixed noun chunks

* more examples

* typo fix

* changed naming

* changed the naming

* typo fix

* Add Japanese kana characters to default exceptions (fix #9693) (#9742)

This includes the main kana, or phonetic characters, used in Japanese.

There are some supplemental kana blocks in Unicode outside the BMP that
could also be included, but because their actual use is rare I omitted
them for now, but maybe they should be added. The omitted blocks are:

- Kana Supplement
- Kana Extended (A and B)
- Small Kana Extension

* Remove NER words from stop words in Norwegian (#9820)

Default stop words in Norwegian bokmål (nb) in Spacy contain important entities, e.g. France, Germany, Russia, Sweden and USA, police district, important units of time, e.g. months and days of the week, and organisations.

Nobody expects their presence among the default stop words. There is a danger of users complying with the general recommendation of filtering out stop words, while being unaware of filtering out important entities from their data.

See explanation in https://github.com/explosion/spaCy/issues/3052#issuecomment-986756711 and comment https://github.com/explosion/spaCy/issues/3052#issuecomment-986951831

* Bump sudachipy version

* Update sudachipy versions

* Bump versions

Bumping to the most recent dictionary just to keep thing current.
Bumping sudachipy to 5.2 because older versions don't support recent
dictionaries.

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Richard Hudson <richard@explosion.ai>
Co-authored-by: Duygu Altinok <duygu@explosion.ai>
Co-authored-by: Haakon Meland Eriksen <haakon.eriksen@far.no>
2022-01-17 08:16:22 +01:00
jsnfly
176a90edee
Fix texcat loss scaling (#9904) (#10002)
* add failing test for issue 9904

* remove division by batch size and summation before applying the mean

Co-authored-by: jonas <jsnfly@gmx.de>
2022-01-13 09:03:23 +01:00
Daniël de Kok
75f7c15187
Span/SpanGroup: wrap SpanC in shared_ptr (#9869)
* Span/SpanGroup: wrap SpanC in shared_ptr

When a Span that was retrieved from a SpanGroup was modified, these
changes were not reflected in the SpanGroup because the underlying
SpanC struct was copied.

This change applies the solution proposed by @nrodnova, to wrap SpanC in
a shared_ptr. This makes a SpanGroup and Spans derived from it share the
same SpanC. So, changes made through a Span are visible in the SpanGroup
as well.

Fixes #9556

* Test that a SpanGroup is modified through its Spans

* SpanGroup.push_back: remove nogil

Modifying std::vector is not thread-safe.

* C++ >= 11 does not allow const T in vector<T>

* Add Span.span_c as a shorthand for Span.c.get

Since this method is cdef'ed, it is only visible from Cython, so we
avoid using raw pointers in Python

Replace existing uses of span.c.get() to use this new method.

* Fix formatting

* Style fix: pointer types

* SpanGroup.to_bytes: reduce number of shared_ptr::get calls

* Mark SpanGroup modification test with issue

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-01-12 13:38:52 +01:00
Florian Cäsar
86e71e7b19
Fix Scorer.score_cats for missing labels (#9443)
* Fix Scorer.score_cats for missing labels

* Add test case for Scorer.score_cats missing labels

* semantic nitpick

* black formatting

* adjust test to give different results depending on multi_label setting

* fix loss function according to whether or not missing values are supported

* add note to docs

* small fixes

* make mypy happy

* Update spacy/pipeline/textcat.py

Co-authored-by: Florian Cäsar <florian.caesar@pm.me>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <svlandeg@github.com>
2021-12-29 11:04:39 +01:00
Duygu Altinok
7ec1452f5f
added ellided forms (#9878)
* added ellided forms

* rearranged a bit

* rearranged a bit

* added stopword tests

* blacked tests file
2021-12-23 13:41:01 +01:00
Sofie Van Landeghem
7847839003
Merge pull request #9891 from explosion/master
Update develop with master
2021-12-17 14:01:27 +01:00
Duygu Altinok
b56b9e7f31
Entity ruler remove pattern (#9685)
* added ruler coe

* added error for none existing pattern

* changed error to warning

* changed error to warning

* added basic tests

* fixed place

* added test files

* went back to error

* went back to pattern error

* minor change to docs

* changed style

* changed doc

* changed error slightly

* added remove to phrasem api

* error key already existed

* phrase matcher match code to api

* blacked tests

* moved comments before expr

* corrected error no

* Update website/docs/api/entityruler.md

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update website/docs/api/entityruler.md

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-12-06 15:32:49 +01:00
Natalia Rodnova
472740d613
Added sents property to Span for Spans spanning over several sentences (#9699)
* Added sents property to Span class that returns a generator of sentences the Span belongs to

* Added description to Span.sents property

* Update test_span to clarify the difference between span.sent and span.sents

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/tests/doc/test_span.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Fix documentation typos in spacy/tokens/span.pyx

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update Span.sents doc string in spacy/tokens/span.pyx

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Parametrized test_span_spans

* Corrected Span.sents to check for span-level hook first. Also, made Span.sent respect doc-level sents hook if no span-level hook is provided

* Corrected Span ocumentation copy/paste issue

* Put back accidentally deleted lines

* Fixed formatting in span.pyx

* Moved check for SENT_START annotation after user hooks in Span.sents

* add version where the property was introduced

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-12-06 09:58:01 +01:00
Lj Miranda
7d50804644
Migrate regression tests into the main test suite (#9655)
* Migrate regressions 1-1000

* Move serialize test to correct file

* Remove tests that won't work in v3

* Migrate regressions 1000-1500

Removed regression test 1250 because v3 doesn't support the old LEX
scheme anymore.

* Add missing imports in serializer tests

* Migrate tests 1500-2000

* Migrate regressions from 2000-2500

* Migrate regressions from 2501-3000

* Migrate regressions from 3000-3501

* Migrate regressions from 3501-4000

* Migrate regressions from 4001-4500

* Migrate regressions from 4501-5000

* Migrate regressions from 5001-5501

* Migrate regressions from 5501 to 7000

* Migrate regressions from 7001 to 8000

* Migrate remaining regression tests

* Fixing missing imports

* Update docs with new system [ci skip]

* Update CONTRIBUTING.md

- Fix formatting
- Update wording

* Remove lemmatizer tests in el lang

* Move a few tests into the general tokenizer

* Separate Doc and DocBin tests
2021-12-04 20:34:48 +01:00
Sofie Van Landeghem
58e29776bd
Merge pull request #9777 from explosion/master
Update develop with master
2021-11-30 14:01:23 +01:00
Duygu Altinok
29f28d1f3e
French NP review (#9667)
* adapted from pt

* added basic tests

* added fr vocab

* fixed noun chunks

* more examples

* typo fix

* changed naming

* changed the naming

* typo fix
2021-11-30 12:19:07 +01:00
Narayan Acharya
1be8a4dab3
Displacy serve entity linking support without manual=True support. (#9748)
* Add support for kb_id to be displayed via displacy.serve. The current support is only limited to the manual option in displacy.render

* Commit to check pre-commit hooks are run.

* Update spacy/displacy/__init__.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Changes as per suggestions on the PR.

* Update website/docs/api/top-level.md

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update website/docs/api/top-level.md

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* tag option as new from 3.2.1 onwards

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2021-11-29 17:13:26 +01:00
Paul O'Leary McCann
ac05de2c6c
Fix Language-specific factory handling in package command (#9674)
* Use internal names for factories

If a component factory is registered like `@French.factory(...)` instead
of `@Language.factory(...)`, the name in the factories registry will be
prefixed with the language code. However in the nlp.config object the
factory will be listed without the language code. The `add_pipe` code
has fallback logic to handle this, but packaging code and the registry
itself don't.

This change makes it so that the factory name in nlp.config is the
language-specific form. It's not clear if this will break anything else,
but it does seem to fix the inconsistency and resolve the specific user
issue that brought this to our attention.

* Change approach to use fallback in package lookup

This adds fallback logic to the package lookup, so it doesn't have to
touch the way the config is built. It seems to fix the tests too.

* Remove unecessary line

* Add test

Thsi also adds an assert that seems to have been forgotten.
2021-11-29 08:31:02 +01:00
Richard Hudson
7b134b8fbd
New tests for a number of alpha languages (#9703)
* Added Slovak

* Added Slovenian tests

* Added Estonian tests

* Added Croatian tests

* Added Latvian tests

* Added Icelandic tests

* Added Afrikaans tests

* Added language-independent tests

* Added Kannada tests

* Tidied up

* Added Albanian tests

* Formatted with black

* Added failing tests for anomalies

* Update spacy/tests/lang/af/test_text.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Estonian tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Croatian tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Icelandic tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Latvian tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Slovak tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Slovenian tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-11-28 21:59:23 +01:00
Natalia Rodnova
a4c43e5c57
Allow Matcher to match on ENT_ID and ENT_KB_ID (#9688)
* Added ENT_ID and ENT_KB_ID into the list of the attributes that Matcher matches on

* Added ENT_ID and ENT_KB_ID to TEST_PATTERNS in test_pattern_validation.py. Disabled tests that I added before

* Update website/docs/api/matcher.md

* Format

* Remove skipped tests

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-11-24 10:37:10 +01:00
Duygu Altinok
25bd9f9d48
Noun chunks for Italian (#9662)
* added it vocab

* copied portuguese

* added possessive determiner

* added conjed Nps

* added nmoded Nps

* test misc

* more examples

* fixed typo

* fixed parenth

* fixed comma

* comma fix

* added syntax iters

* fix some index problems

* fixed index

* corrected heads for test case

* fixed tets case

* fixed determiner gender

* cleaned left over

* added example with apostophe
2021-11-23 16:29:25 +01:00
Duygu Altinok
a7d7e80adb
EntityRuler improve disk load error message (#9658)
* added error string

* added serialization test

* added more to if statements

* wrote file to tempdir

* added tempdir

* changed parameter a bit

* Update spacy/tests/pipeline/test_entity_ruler.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-11-23 16:26:05 +01:00
Adriane Boyd
9ac6d4991e
Add doc_cleaner component (#9659)
* Add doc_cleaner component

* Fix types

* Fix loop

* Rephrase method description
2021-11-23 15:33:33 +01:00
Adriane Boyd
c9baf9d196
Fix spancat for empty docs and zero suggestions (#9654)
* Fix spancat for empty docs and zero suggestions

* Use ops.xp.zeros in test
2021-11-15 12:40:55 +01:00
Sofie Van Landeghem
c97f29c593
Merge pull request #9629 from ljvmiranda921/chore/migrate-regressions
Migrate regression and other tests to the new pytest marker
2021-11-08 09:07:38 +01:00
Lj Miranda
909177589d Remove utility script 2021-11-06 06:35:58 +08:00
Adriane Boyd
0fc3dee772
Merge pull request #9596 from adrianeboyd/tests/reenable-v3.2.0-tests
Reenable tests for v3.2.0
2021-11-05 10:54:30 +01:00
Adriane Boyd
e6f91b6f27
Format (#9630) 2021-11-05 09:56:26 +01:00
Lj Miranda
8e7deaf210 Add missing imports in some regression tests
- test_issue7001-8000.py
- test_issue8190.py
2021-11-05 11:47:59 +08:00
Lj Miranda
addeb34bc4 Decorate regression tests
Even if the issue number is already in the file, I still
decorated them just to follow the convention found in test_issue8168.py
2021-11-05 11:47:44 +08:00
Lj Miranda
91dec2c76e Decorate non-regression tests 2021-11-05 11:47:33 +08:00
Lj Miranda
199943deb4 Add simple script to add pytest marks 2021-11-05 11:47:28 +08:00
Duygu Altinok
f0e8c9fe58
Spanish noun chunks review (#9537)
* updated syntax iters

* formatted the code

* added prepositional objects

* code clean up

* eliminated left attached adp

* added es vocab

* added basic tests

* fixed typo

* fixed typo

* list to set

* fixed doc name

* added code for conj

* more tests

* differentiated adjectives and flat

* fixed typo

* added compounds

* more compounds

* tests for compounds

* tests for nominal modifiers

* fixed typo

* fixed typo

* formatted file

* reformatted tests

* fixed typo

* fixed punct typo

* formatted after changes

* added indirect object

* added full sentence examples

* added longer full sentence examples

* fixed sentence length of test

* added passive subj

* added test case by Damian
2021-11-05 00:46:36 +01:00
Duygu Altinok
6e6650307d
Portuguese noun chunks review (#9559)
* added tests

* added pt vocab

* transferred spanish

* added syntax iters

* fixed parenthesis

* added nmod example

* added relative pron

* fixed rel pron

* added rel subclause

* corrected typo

* added more NP chains

* long sentence

* fixed typo

* fixed typo

* fixed typo

* corrected heads

* added passive subj

* added pass subj

* added passive obj

* refinement to rights

* went back to odl

* fixed test

* fixed typo

* fixed typo

* formatted

* Format

* Format test cases

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-11-04 23:55:49 +01:00
Adriane Boyd
07dea324f6 Merge remote-tracking branch 'upstream/develop' into chore/switch-to-master-v3.2.0 2021-11-03 15:32:18 +01:00
Bram Vanroy
cab9209c3d
use metaclass to decorate errors (#9593) 2021-11-03 15:29:32 +01:00
Adriane Boyd
db0d8c56d0
Add test for Language.pipe as_tuples with custom error handlers (#9608)
* make nlp.pipe() return None docs when no exceptions are (re-)raised during error handling

* Remove changes other than as_tuples test

* Only check warning count for one process

* Fix types

* Format

Co-authored-by: Xi Bai <xi.bai.ed@gmail.com>
2021-11-03 10:57:34 +01:00
Adriane Boyd
6eee024ff6
Pickle Doc._context (#9603) 2021-11-03 09:14:29 +01:00
Adriane Boyd
4d5db737e9 Revert "Temporarily skip compat tests (#9594)"
This reverts commit 667572adca.
2021-11-02 14:24:06 +01:00