Commit Graph

68 Commits

Author SHA1 Message Date
Ines Montani
70abcca60e Update Thinc pin 2020-07-11 17:02:54 +02:00
Ines Montani
9e48ea48a1 Update Thinc pin 2020-07-10 23:34:57 +02:00
Ines Montani
a3667394b4 Integrate with latest Thinc and config overrides 2020-07-10 19:47:05 +02:00
Matthew Honnibal
cc477be952
Improve gold-standard alignment (#5711)
* Remove previous alignment

* Implement better alignment, using ragged data structure

* Use pytokenizations for alignment

* Fixes

* Fixes

* Fix overlapping entities in alignment

* Fix align split_sents

* Update test

* Commit align.py

* Try to appease setuptools

* Fix flake8

* use realistic entities for testing

* Update tests for better alignment

* Improve alignment heuristic

Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2020-07-06 17:39:31 +02:00
Ines Montani
2d9ca0cd8b Make Thinc version consistent 2020-07-04 14:39:34 +02:00
Matthew Honnibal
2bd1bf81f1
Refactor pretrain and support character-based objective for v3 (#5706)
* Start adding character-based stuff

* Start adding character-based objective

* Start adding character-based stuff

* Start adding character-based objective

* Remove outdated comment

* Update pretraining models

* Add/fix character-based multi-task models

* Refactor pretrain and support character-based objective

* Update pretrain config

* Remove unused

* Fix flake8 errors

* Clean up imports

* Format

* Format

* Update Thinc version

* Raise error if vectors objective but no vectors
2020-07-03 17:57:28 +02:00
Sebastián Ramírez
b0f425971e Remove shellingham from dependencies 2020-07-01 21:47:50 +02:00
Sebastián Ramírez
764499246e 🔧 Update spacy CLI script entrypoint to support completion 2020-07-01 20:21:05 +02:00
Sebastián Ramírez
b02db67247 Add shellingham for automatic shell detection
and update Typer pinning
2020-07-01 20:20:04 +02:00
Matthew Honnibal
7c9178d503 Update requirements 2020-06-28 23:56:45 +02:00
Ines Montani
01c394eb23 Update to latest Typer and remove hacks 2020-06-25 12:27:19 +02:00
Ines Montani
83b4aa05c9
Merge pull request #5626 from explosion/feature/typer 2020-06-22 06:29:03 -07:00
Ines Montani
3f2f5f9cb3 Remove ml_datasets from install dependencies 2020-06-22 12:14:51 +02:00
Ines Montani
ea9fd3abcd Replace plac with typer [ci skip] 2020-06-22 12:04:41 +02:00
Ines Montani
95cc9d657d Update srsly pin [ci skip] 2020-06-22 11:57:46 +02:00
Ines Montani
e0c16c0577 Update wasabi pin 2020-06-21 22:25:34 +02:00
Ines Montani
52728d8fa3 Merge branch 'develop' into master-tmp 2020-06-20 15:52:00 +02:00
adrianeboyd
009119fa66
Requirements/setup for Japanese (#5553)
* Add sudachipy and sudachidict_core to Makefile

* Switch ja requirements from fugashi to sudachipy
2020-06-06 00:22:18 +02:00
Ines Montani
810fce3bb1 Merge branch 'develop' into master-tmp 2020-06-03 14:36:59 +02:00
Ines Montani
bed62991ad Tidy up requirements 2020-05-30 14:59:55 +02:00
Adriane Boyd
736f3cb5af Bump version and deps for v2.3.0
* spacy to v2.3.0
* thinc to v7.4.1
* spacy-lookups-data to v0.3.2
2020-05-25 12:03:49 +02:00
Ines Montani
6e6db6afb6 Better model compatibility and validation 2020-05-22 15:42:46 +02:00
Ines Montani
24f72c669c Merge branch 'develop' into master-tmp 2020-05-21 18:39:06 +02:00
Sofie Van Landeghem
7f5715a081
Various fixes to NEL functionality, Example class etc (#5460)
* setting KB in the EL constructor, similar to how the model is passed on

* removing wikipedia example files - moved to projects

* throw an error when nlp.update is called with 2 positional arguments

* rewriting the config logic in create pipe to accomodate for other objects (e.g. KB) in the config

* update config files with new parameters

* avoid training pipeline components that don't have a model (like sentencizer)

* various small fixes + UX improvements

* small fixes

* set thinc to 8.0.0a9 everywhere

* remove outdated comment
2020-05-20 11:41:12 +02:00
Matthew Honnibal
a2830c3ef5 Use thinc 8.0.0a9 2020-05-19 16:23:11 +02:00
svlandeg
6fb6a8518c bump to 3.0.0.dev7 and thinc to 8.0.0a8 2020-05-15 13:25:54 +02:00
adrianeboyd
f49e2810e6
Add Polish lemmatizer (#5413)
* Add Polish lemmatizer

Contributed by @ryszardtuora

* Add missing import
2020-05-14 18:23:19 +02:00
svlandeg
9fe1e23512 update to thinc 8.0.0a6 2020-05-12 13:51:25 +02:00
adrianeboyd
90ce34db42
Add cuda101 and cuda102 options to setup (#5377)
* Add cuda101 and cuda102 options to setup

* Update cudaNNN options in docs
2020-04-29 12:51:12 +02:00
Michael
5b5528ff2e
Add !=3.4.* to python_requires (#5344)
Missed in 80d554f2e2
2020-04-27 22:02:09 +02:00
Tom Milligan
e904958115
Limit to cupy-cuda v8, so as not to pull in v9 automatically. (#5194) 2020-03-29 13:52:08 +02:00
Ines Montani
46568f40a7 Merge branch 'master' into tmp/sync 2020-03-26 13:38:14 +01:00
Sofie Van Landeghem
218e1706ac
Bugfix linking vectors (#5196)
* restore call to _load_vectors

* bump to thinc 8.0.0a3

* bump to 3.0.0.dev4
2020-03-25 10:20:11 +01:00
Adriane Boyd
4d655b1d45 Require srsly >=1.0.2 2020-03-04 13:50:37 +01:00
Sofie Van Landeghem
06f0a8daa0
Default settings to configurations (#4995)
* fix grad_clip naming

* cleaning up pretrained_vectors out of cfg

* further refactoring Model init's

* move Model building out of pipes

* further refactor to require a model config when creating a pipe

* small fixes

* making cfg in nn_parser more consistent

* fixing nr_class for parser

* fixing nn_parser's nO

* fix printing of loss

* architectures in own file per type, consistent naming

* convenience methods default_tagger_config and default_tok2vec_config

* let create_pipe access default config if available for that component

* default_parser_config

* move defaults to separate folder

* allow reading nlp from package or dir with argument 'name'

* architecture spacy.VocabVectors.v1 to read static vectors from file

* cleanup

* default configs for nel, textcat, morphologizer, tensorizer

* fix imports

* fixing unit tests

* fixes and clean up

* fixing defaults, nO, fix unit tests

* restore parser IO

* fix IO

* 'fix' serialization test

* add *.cfg to manifest

* fix example configs with additional arguments

* replace Morpohologizer with Tagger

* add IO bit when testing overfitting of tagger (currently failing)

* fix IO - don't initialize when reading from disk

* expand overfitting tests to also check IO goes OK

* remove dropout from HashEmbed to fix Tagger performance

* add defaults for sentrec

* update thinc

* always pass a Model instance to a Pipe

* fix piped_added statement

* remove obsolete W029

* remove obsolete errors

* restore byte checking tests (work again)

* clean up test

* further test cleanup

* convert from config to Model in create_pipe

* bring back error when component is not initialized

* cleanup

* remove calls for nlp2.begin_training

* use thinc.api in imports

* allow setting charembed's nM and nC

* fix for hardcoded nM/nC + unit test

* formatting fixes

* trigger build
2020-02-27 18:42:27 +01:00
Ines Montani
ed9358420e Merge branch 'master' into pr/5060 2020-02-26 12:51:29 +01:00
svlandeg
62406a9513 update from thinc 7.4.0.dev2 to 7.4.0 2020-02-26 10:30:35 +01:00
svlandeg
d848a68340 thinc 7.4.0.dev2 2020-02-25 12:07:42 +01:00
Santiago Castro
54d8665ff7
Add missing comma in a dependency specification
Conda is complaining that it can't parse that line otherwise.
2020-02-24 16:15:28 -05:00
Ines Montani
de11ea753a Merge branch 'master' into develop 2020-02-18 14:47:23 +01:00
Ines Montani
2ed49404e3
Improve setup.py and call into Cython directly (#4952)
* Improve setup.py and call into Cython directly

* Add numpy to setup_requires

* Improve clean helper

* Update setup.cfg

* Try if it builds without pyproject.toml

* Update MANIFEST.in
2020-02-11 17:46:18 -05:00
adrianeboyd
5d8cb60e43
Update lower pin for srsly to 1.0.1 (#4976) 2020-02-10 20:30:54 -05:00
Matthew Honnibal
9df0b1360d Fix ml_datasets 2020-01-30 10:35:18 +01:00
Matthew Honnibal
0c5c8c37ee Depend on tqdm 2020-01-30 10:26:03 +01:00
Matthew Honnibal
d031440de2
Update setup.cfg 2020-01-29 17:35:46 +01:00
Sofie Van Landeghem
569cc98982
Update spaCy for thinc 8.0.0 (#4920)
* Add load_from_config function

* Add train_from_config script

* Merge configs and expose via spacy.config

* Fix script

* Suggest create_evaluation_callback

* Hard-code for NER

* Fix errors

* Register command

* Add TODO

* Update train-from-config todos

* Fix imports

* Allow delayed setting of parser model nr_class

* Get train-from-config working

* Tidy up and fix scores and printing

* Hide traceback if cancelled

* Fix weighted score formatting

* Fix score formatting

* Make output_path optional

* Add Tok2Vec component

* Tidy up and add tok2vec_tensors

* Add option to copy docs in nlp.update

* Copy docs in nlp.update

* Adjust nlp.update() for set_annotations

* Don't shuffle pipes in nlp.update, decruft

* Support set_annotations arg in component update

* Support set_annotations in parser update

* Add get_gradients method

* Add get_gradients to parser

* Update errors.py

* Fix problems caused by merge

* Add _link_components method in nlp

* Add concept of 'listeners' and ControlledModel

* Support optional attributes arg in ControlledModel

* Try having tok2vec component in pipeline

* Fix tok2vec component

* Fix config

* Fix tok2vec

* Update for Example

* Update for Example

* Update config

* Add eg2doc util

* Update and add schemas/types

* Update schemas

* Fix nlp.update

* Fix tagger

* Remove hacks from train-from-config

* Remove hard-coded config str

* Calculate loss in tok2vec component

* Tidy up and use function signatures instead of models

* Support union types for registry models

* Minor cleaning in Language.update

* Make ControlledModel specifically Tok2VecListener

* Fix train_from_config

* Fix tok2vec

* Tidy up

* Add function for bilstm tok2vec

* Fix type

* Fix syntax

* Fix pytorch optimizer

* Add example configs

* Update for thinc describe changes

* Update for Thinc changes

* Update for dropout/sgd changes

* Update for dropout/sgd changes

* Unhack gradient update

* Work on refactoring _ml

* Remove _ml.py module

* WIP upgrade cli scripts for thinc

* Move some _ml stuff to util

* Import link_vectors from util

* Update train_from_config

* Import from util

* Import from util

* Temporarily add ml.component_models module

* Move ml methods

* Move typedefs

* Update load vectors

* Update gitignore

* Move imports

* Add PrecomputableAffine

* Fix imports

* Fix imports

* Fix imports

* Fix missing imports

* Update CLI scripts

* Update spacy.language

* Add stubs for building the models

* Update model definition

* Update create_default_optimizer

* Fix import

* Fix comment

* Update imports in tests

* Update imports in spacy.cli

* Fix import

* fix obsolete thinc imports

* update srsly pin

* from thinc to ml_datasets for example data such as imdb

* update ml_datasets pin

* using STATE.vectors

* small fix

* fix Sentencizer.pipe

* black formatting

* rename Affine to Linear as in thinc

* set validate explicitely to True

* rename with_square_sequences to with_list2padded

* rename with_flatten to with_list2array

* chaining layernorm

* small fixes

* revert Optimizer import

* build_nel_encoder with new thinc style

* fixes using model's get and set methods

* Tok2Vec in component models, various fixes

* fix up legacy tok2vec code

* add model initialize calls

* add in build_tagger_model

* small fixes

* setting model dims

* fixes for ParserModel

* various small fixes

* initialize thinc Models

* fixes

* consistent naming of window_size

* fixes, removing set_dropout

* work around Iterable issue

* remove legacy tok2vec

* util fix

* fix forward function of tok2vec listener

* more fixes

* trying to fix PrecomputableAffine (not succesful yet)

* alloc instead of allocate

* add morphologizer

* rename residual

* rename fixes

* Fix predict function

* Update parser and parser model

* fixing few more tests

* Fix precomputable affine

* Update component model

* Update parser model

* Move backprop padding to own function, for test

* Update test

* Fix p. affine

* Update NEL

* build_bow_text_classifier and extract_ngrams

* Fix parser init

* Fix test add label

* add build_simple_cnn_text_classifier

* Fix parser init

* Set gpu off by default in example

* Fix tok2vec listener

* Fix parser model

* Small fixes

* small fix for PyTorchLSTM parameters

* revert my_compounding hack (iterable fixed now)

* fix biLSTM

* Fix uniqued

* PyTorchRNNWrapper fix

* small fixes

* use helper function to calculate cosine loss

* small fixes for build_simple_cnn_text_classifier

* putting dropout default at 0.0 to ensure the layer gets built

* using thinc util's set_dropout_rate

* moving layer normalization inside of maxout definition to optimize dropout

* temp debugging in NEL

* fixed NEL model by using init defaults !

* fixing after set_dropout_rate refactor

* proper fix

* fix test_update_doc after refactoring optimizers in thinc

* Add CharacterEmbed layer

* Construct tagger Model

* Add missing import

* Remove unused stuff

* Work on textcat

* fix test (again :)) after optimizer refactor

* fixes to allow reading Tagger from_disk without overwriting dimensions

* don't build the tok2vec prematuraly

* fix CharachterEmbed init

* CharacterEmbed fixes

* Fix CharacterEmbed architecture

* fix imports

* renames from latest thinc update

* one more rename

* add initialize calls where appropriate

* fix parser initialization

* Update Thinc version

* Fix errors, auto-format and tidy up imports

* Fix validation

* fix if bias is cupy array

* revert for now

* ensure it's a numpy array before running bp in ParserStepModel

* no reason to call require_gpu twice

* use CupyOps.to_numpy instead of cupy directly

* fix initialize of ParserModel

* remove unnecessary import

* fixes for CosineDistance

* fix device renaming

* use refactored loss functions (Thinc PR 251)

* overfitting test for tagger

* experimental settings for the tagger: avoid zero-init and subword normalization

* clean up tagger overfitting test

* use previous default value for nP

* remove toy config

* bringing layernorm back (had a bug - fixed in thinc)

* revert setting nP explicitly

* remove setting default in constructor

* restore values as they used to be

* add overfitting test for NER

* add overfitting test for dep parser

* add overfitting test for textcat

* fixing init for linear (previously affine)

* larger eps window for textcat

* ensure doc is not None

* Require newer thinc

* Make float check vaguer

* Slop the textcat overfit test more

* Fix textcat test

* Fix exclusive classes for textcat

* fix after renaming of alloc methods

* fixing renames and mandatory arguments (staticvectors WIP)

* upgrade to thinc==8.0.0.dev3

* refer to vocab.vectors directly instead of its name

* rename alpha to learn_rate

* adding hashembed and staticvectors dropout

* upgrade to thinc 8.0.0.dev4

* add name back to avoid warning W020

* thinc dev4

* update srsly

* using thinc 8.0.0a0 !

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
Co-authored-by: Ines Montani <ines@ines.io>
2020-01-29 17:06:46 +01:00
Ines Montani
c22f075509 Update pydantic version pin [ci skip] 2019-12-25 17:29:53 +01:00
Ines Montani
33a2682d60
Add better schemas and validation using Pydantic (#4831)
* Remove unicode declarations

* Remove Python 3.5 and 2.7 from CI

* Don't require pathlib

* Replace compat helpers

* Remove OrderedDict

* Use f-strings

* Set Cython compiler language level

* Fix typo

* Re-add OrderedDict for Table

* Update setup.cfg

* Revert CONTRIBUTING.md

* Add better schemas and validation using Pydantic

* Revert lookups.md

* Remove unused import

* Update spacy/schemas.py

Co-Authored-By: Sebastián Ramírez <tiangolo@gmail.com>

* Various small fixes

* Fix docstring

Co-authored-by: Sebastián Ramírez <tiangolo@gmail.com>
2019-12-25 12:39:49 +01:00
Ines Montani
db55577c45
Drop Python 2.7 and 3.5 (#4828)
* Remove unicode declarations

* Remove Python 3.5 and 2.7 from CI

* Don't require pathlib

* Replace compat helpers

* Remove OrderedDict

* Use f-strings

* Set Cython compiler language level

* Fix typo

* Re-add OrderedDict for Table

* Update setup.cfg

* Revert CONTRIBUTING.md

* Revert lookups.md

* Revert top-level.md

* Small adjustments and docs [ci skip]
2019-12-22 01:53:56 +01:00
Matthew Honnibal
0a3175d46f Require thinc v7.4.0.dev0 2019-12-10 00:47:51 +01:00