Commit Graph

2447 Commits

Author SHA1 Message Date
github-actions[bot]
1bbf232074
Auto-format code with black (#10479)
* Auto-format code with black

* Update spacy/lang/hsb/lex_attrs.py

Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-03-11 12:20:23 +01:00
Adriane Boyd
297dd82c86
Fix initial special cases for Tokenizer.explain (#10460)
Add the missing initial check for special cases to `Tokenizer.explain`
to align with `Tokenizer._tokenize_affixes`.
2022-03-11 10:50:47 +01:00
jnphilipp
5ca0dbae76
Add Lower Sorbian support. (#10431)
* Add support basic support for lower sorbian.

* Add some test for dsb.

* Update spacy/lang/dsb/examples.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-03-07 16:57:14 +01:00
Paul O'Leary McCann
61ba5450ff
Fix get_matching_ents (#10451)
* Fix get_matching_ents

Not sure what happened here - the code prior to this commit simply does
not work. It's already covered by entity linker tests, which were
succeeding in the NEL PR, but couldn't possibly succeed on master.

* Fix test

Test was indented inside another test and so doesn't seem to have been
running properly.
2022-03-07 16:56:57 +01:00
jnphilipp
7ed7908716
Add Upper Sorbian support. (#10432)
* Add support basic support for upper sorbian.

* Add tokenizer exceptions and tests.

* Update spacy/lang/hsb/examples.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-03-07 16:20:39 +01:00
Paul O'Leary McCann
91acc3ea75
Fix entity linker batching (#9669)
* Partial fix of entity linker batching

* Add import

* Better name

* Add `use_gold_ents` option, docs

* Change to v2, create stub v1, update docs etc.

* Fix error type

Honestly no idea what the right type to use here is.
ConfigValidationError seems wrong. Maybe a NotImplementedError?

* Make mypy happy

* Add hacky fix for init issue

* Add legacy pipeline entity linker

* Fix references to class name

* Add __init__.py for legacy

* Attempted fix for loss issue

* Remove placeholder V1

* formatting

* slightly more interesting train data

* Handle batches with no usable examples

This adds a test for batches that have docs but not entities, and a
check in the component that detects such cases and skips the update step
as thought the batch were empty.

* Remove todo about data verification

Check for empty data was moved further up so this should be OK now - the
case in question shouldn't be possible.

* Fix gradient calculation

The model doesn't know which entities are not in the kb, so it generates
embeddings for the context of all of them.

However, the loss does know which entities aren't in the kb, and it
ignores them, as there's no sensible gradient.

This has the issue that the gradient will not be calculated for some of
the input embeddings, which causes a dimension mismatch in backprop.
That should have caused a clear error, but with numpyops it was causing
nans to happen, which is another problem that should be addressed
separately.

This commit changes the loss to give a zero gradient for entities not in
the kb.

* add failing test for v1 EL legacy architecture

* Add nasty but simple working check for legacy arch

* Clarify why init hack works the way it does

* Clarify use_gold_ents use case

* Fix use gold ents related handling

* Add tests for no gold ents and fix other tests

* Use aligned ents function (not working)

This doesn't actually work because the "aligned" ents are gold-only. But
if I have a different function that returns the intersection, *then*
this will work as desired.

* Use proper matching ent check

This changes the process when gold ents are not used so that the
intersection of ents in the pred and gold is used.

* Move get_matching_ents to Example

* Use model attribute to check for legacy arch

* Rename flag

* bump spacy-legacy to lower 3.0.9

Co-authored-by: svlandeg <svlandeg@github.com>
2022-03-04 09:17:36 +01:00
Adriane Boyd
8e93fa8507
Fix Vectors.n_keys for floret vectors (#10394)
Fix `Vectors.n_keys` for floret vectors to match docstring description
and avoid W007 warnings in similarity methods.
2022-03-01 09:21:25 +01:00
github-actions[bot]
d637b34e2f
Auto-format code with black (#10377)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2022-02-25 10:00:21 +01:00
Adriane Boyd
b16da378bb
Re-remove universe tests from test suite (#10357) 2022-02-23 21:08:56 +01:00
kadarakos
249b97184d
Bugfixes and test for rehearse (#10347)
* fixing argument order for rehearse

* rehearse test for ner and tagger

* rehearse bugfix

* added test for parser

* test for multilabel textcat

* rehearse fix

* remove debug line

* Update spacy/tests/training/test_rehearse.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/tests/training/test_rehearse.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Kádár Ákos <akos@onyx.uvt.nl>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-02-23 16:10:05 +01:00
Daniël de Kok
78a8bec4d0
Make core projectivization functions cdef nogil (#10241)
* Make core projectivization methods cdef nogil

While profiling the parser, I noticed that relatively a lot of time is
spent in projectivization. This change rewrites the functions in the
core loops as cdef nogil for efficiency.

In C++-land, we use vector in place of Python lists and absent heads
are represented as -1 in place of None.

* _heads_to_c: add assertion

Validation should be performed by the caller, but this assertion ensures that
we are not reading/writing out of bounds with incorrect input.
2022-02-21 15:02:21 +01:00
Adriane Boyd
30030176ee
Update Korean defaults for Tokenizer (#10322)
Update Korean defaults for `Tokenizer` for tokenization following UD
Korean Kaist.
2022-02-21 10:26:19 +01:00
Adriane Boyd
f32ee2e533
Fix NER check in CoNLL-U converter (#10302)
* Fix NER check in CoNLL-U converter

Leave ents unset if no NER annotation is found in the MISC column.

* Revert to global rather than per-sentence NER check

* Update spacy/training/converters/conllu_to_docs.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-02-21 10:24:52 +01:00
Peter Baumgartner
3358fb9bdd
Miscellaneous Minor SpanGroups/DocBin Improvements (#10250)
* MultiHashEmbed vector docs correction

* doc copy span test

* ignore empty lists in DocBin.span_groups

* serialized empty list const + SpanGroups.is_empty

* add conditional deserial on from_bytes

* clean up + reorganize

* rm test

* add constant as class attribute

* rename to _EMPTY_BYTES

* Update spacy/tests/doc/test_span.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-02-21 10:24:15 +01:00
Adriane Boyd
f4c74764b8
Fix Tok2Vec for empty batches (#10324)
* Add test for tok2vec with vectors and empty docs

* Add shortcut for empty batch in Tok2Vec.predict

* Avoid types
2022-02-21 10:22:36 +01:00
github-actions[bot]
6de84c8757
Auto-format code with black (#10333)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2022-02-21 09:15:42 +01:00
Adriane Boyd
28ba31e793
Add whitespace and combined augmenters (#10170)
Add whitespace augmenter that inserts a single whitespace token into a
doc containing annotation used in core trained pipelines.

Add a combined augmenter that handles lowercasing, orth variants and
whitespace augmentation.
2022-02-17 15:54:09 +01:00
Sofie Van Landeghem
a16b14e591
Merge branch 'master' into copy/develop 2022-02-16 14:04:59 +01:00
github-actions[bot]
5adedb8587
Auto-format code with black (#10260)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2022-02-11 14:23:01 +01:00
Peter Baumgartner
ee662ec381
Raise error in spacy package when model name is not a valid python identifier (#10192)
* MultiHashEmbed vector docs correction

* raise error for invalid identifier as model name

* more succinct error message

* update success message

* permitted package name + double underscore

* clarify package name error

* clarify underscore run message

* tweak language + simplify underscore run

* cleanup underscore run warning

* spacing correction

* Update spacy/tests/test_cli.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-02-10 08:15:23 +01:00
Antti Ajanki
e9c26f2ee9
Add a noun chunker for Finnish (#10214)
with test cases
2022-02-08 08:44:11 +01:00
Sofie Van Landeghem
deb143fa70
Token sent attributes more consistent (#10164)
* remove duplicate line

* add sent start/end token attributes to the docs

* let has_annotation work with IS_SENT_END

* elif instead of if

* add has_annotation test for sent attributes

* fix typo

* remove duplicate is_sent_start entry in docs
2022-02-08 08:35:37 +01:00
Adriane Boyd
63e1e4e8f6
Fix debug data check for ents that cross sents (#10188)
* Fix debug data check for ents that cross sents

* Use aligned sent starts to have the same indices for the NER and sent
start annotation
* Add a temporary, insufficient hack for the case where a
sentence-initial reference token is split into multiple tokens in the
predicted doc, since `Example.get_aligned("SENT_START")` currently
aligns `True` to all the split tokens.

* Improve test example

* Use Example.get_aligned_sent_starts

* Add test for crossing entity
2022-02-07 08:53:30 +01:00
github-actions[bot]
91ccacea12
Auto-format code with black (#10209)
* Auto-format code with black

* add black requirement to dev dependencies and pin to 22.x

* ignore black dependency for comparison with setup.cfg

Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
Co-authored-by: svlandeg <svlandeg@github.com>
2022-02-06 16:30:30 +01:00
Sofie Van Landeghem
14513f82da
Merge pull request #10215 from explosion/master
update develop
2022-02-06 13:45:41 +01:00
Adriane Boyd
0668a449ba
Add Pipe.hide_labels to omit labels from pipeline meta (#10175) 2022-02-05 17:59:24 +01:00
Adriane Boyd
fef896ce49
Allow Example to align whitespace annotation (#10189)
Remove exception for whitespace tokens in `Example.get_aligned` so that
annotation on whitespace tokens is aligned in the same way as for
non-whitespace tokens.
2022-02-03 17:01:53 +01:00
Adriane Boyd
4f441dfa24
Fix infix as prefix in Tokenizer.explain (#10140)
* Fix infix as prefix in Tokenizer.explain

Update `Tokenizer.explain` to align with the `Tokenizer` algorithm:

* skip infix matches that are prefixes in the current substring

* Update tokenizer pseudocode in docs
2022-01-28 17:00:54 +01:00
github-actions[bot]
6d4db5c3c7
Auto-format code with black (#10106)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2022-01-21 10:01:10 +01:00
Sofie Van Landeghem
4465fe0306
Merge branch 'develop' into feature/master_copy 2022-01-20 13:36:17 +01:00
Duygu Altinok
47a2916801
Intify IOB (#9738)
* added iob to int

* added tests

* added iob strings

* added error

* blacked attrs

* Update spacy/tests/lang/test_attrs.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update spacy/attrs.pyx

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* added iob strings as global

* minor refinement with iob

* removed iob strings from token

* changed to uppercase

* cleaned and went back to master version

* imported iob from attrs

* Update and format errors

* Support and test both str and int ENT_IOB key

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-01-20 13:19:38 +01:00
Duygu Altinok
268ddf8a06
Add ENT_IOB key to Matcher (#9649)
* added new field

* added exception for IOb strings

* minor refinement to schema

* removed field

* fixed typo

* imported numeriacla val

* changed the code bit

* cosmetics

* added test for matcher

* set ents of moc docs

* added invalid pattern

* minor update to documentation

* blacked matcher

* added pattern validation

* add IOB vals to schema

* changed into test

* mypy compat

* cleaned left over

* added compat import

* changed type

* added compat import

* changed literal a bit

* went back to old

* made explicit type

* Update spacy/schemas.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update spacy/schemas.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update spacy/schemas.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-01-20 13:18:39 +01:00
Adriane Boyd
a55212fca0
Determine labels by factory name in debug data (#10079)
* Determine labels by factory name in debug data

For all components, return labels for all components with the
corresponding factory name rather than for only the default name.

For `spancat`, return labels as a dict keyed by `spans_key`.

* Refactor for typing

* Add test

* Use assert instead of cast, removed unneeded arg

* Mark test as slow
2022-01-20 11:42:52 +01:00
Richard Hudson
e9c6314539
Bugfix for similarity return types (#10051) 2022-01-20 11:40:46 +01:00
Daniël de Kok
50d2a2c930
User fewer Vector internals (#9879)
* Use Vectors.shape rather than Vectors.data.shape

* Use Vectors.size rather than Vectors.data.size

* Add Vectors.to_ops to move data between different ops

* Add documentation for Vector.to_ops
2022-01-18 17:14:35 +01:00
Adriane Boyd
4dfd559e55
Fix spaces in Doc.from_docs for empty docs (#10052)
Fix spaces in `Doc.from_docs(ensure_whitespace=True)` for cases where an
doc ending in whitespace is followed by an empty doc.
2022-01-18 17:12:42 +01:00
Paul O'Leary McCann
c28e33637b
Mark flaky spancat test so it doesn't fail the build (#10075)
* Mark flaky spancat test so it doesn't fail the build

* Skip, don't run and ignore
2022-01-18 09:36:28 +01:00
Natalia Rodnova
47ea6704f1
Span richcmp fix (#9956)
* Corrected Span's __richcmp__ implementation to take end, label and kb_id in consideration

* Updated test

* Updated test

* Removed formatting from a test for readability sake

* Use same tuples for all comparisons

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-01-17 11:17:49 +01:00
Adriane Boyd
add52935ff
Revert "Bump sudachipy version (#9917)" (#10071)
This reverts commit 58bdd8607b.
2022-01-17 10:38:37 +01:00
Paul O'Leary McCann
58bdd8607b
Bump sudachipy version (#9917)
* Edited Slovenian stop words list (#9707)

* Noun chunks for Italian (#9662)

* added it vocab

* copied portuguese

* added possessive determiner

* added conjed Nps

* added nmoded Nps

* test misc

* more examples

* fixed typo

* fixed parenth

* fixed comma

* comma fix

* added syntax iters

* fix some index problems

* fixed index

* corrected heads for test case

* fixed tets case

* fixed determiner gender

* cleaned left over

* added example with apostophe

* French NP review (#9667)

* adapted from pt

* added basic tests

* added fr vocab

* fixed noun chunks

* more examples

* typo fix

* changed naming

* changed the naming

* typo fix

* Add Japanese kana characters to default exceptions (fix #9693) (#9742)

This includes the main kana, or phonetic characters, used in Japanese.

There are some supplemental kana blocks in Unicode outside the BMP that
could also be included, but because their actual use is rare I omitted
them for now, but maybe they should be added. The omitted blocks are:

- Kana Supplement
- Kana Extended (A and B)
- Small Kana Extension

* Remove NER words from stop words in Norwegian (#9820)

Default stop words in Norwegian bokmål (nb) in Spacy contain important entities, e.g. France, Germany, Russia, Sweden and USA, police district, important units of time, e.g. months and days of the week, and organisations.

Nobody expects their presence among the default stop words. There is a danger of users complying with the general recommendation of filtering out stop words, while being unaware of filtering out important entities from their data.

See explanation in https://github.com/explosion/spaCy/issues/3052#issuecomment-986756711 and comment https://github.com/explosion/spaCy/issues/3052#issuecomment-986951831

* Bump sudachipy version

* Update sudachipy versions

* Bump versions

Bumping to the most recent dictionary just to keep thing current.
Bumping sudachipy to 5.2 because older versions don't support recent
dictionaries.

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Richard Hudson <richard@explosion.ai>
Co-authored-by: Duygu Altinok <duygu@explosion.ai>
Co-authored-by: Haakon Meland Eriksen <haakon.eriksen@far.no>
2022-01-17 08:16:22 +01:00
jsnfly
176a90edee
Fix texcat loss scaling (#9904) (#10002)
* add failing test for issue 9904

* remove division by batch size and summation before applying the mean

Co-authored-by: jonas <jsnfly@gmx.de>
2022-01-13 09:03:23 +01:00
Florian Cäsar
86e71e7b19
Fix Scorer.score_cats for missing labels (#9443)
* Fix Scorer.score_cats for missing labels

* Add test case for Scorer.score_cats missing labels

* semantic nitpick

* black formatting

* adjust test to give different results depending on multi_label setting

* fix loss function according to whether or not missing values are supported

* add note to docs

* small fixes

* make mypy happy

* Update spacy/pipeline/textcat.py

Co-authored-by: Florian Cäsar <florian.caesar@pm.me>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <svlandeg@github.com>
2021-12-29 11:04:39 +01:00
Duygu Altinok
7ec1452f5f
added ellided forms (#9878)
* added ellided forms

* rearranged a bit

* rearranged a bit

* added stopword tests

* blacked tests file
2021-12-23 13:41:01 +01:00
Sofie Van Landeghem
7847839003
Merge pull request #9891 from explosion/master
Update develop with master
2021-12-17 14:01:27 +01:00
Duygu Altinok
b56b9e7f31
Entity ruler remove pattern (#9685)
* added ruler coe

* added error for none existing pattern

* changed error to warning

* changed error to warning

* added basic tests

* fixed place

* added test files

* went back to error

* went back to pattern error

* minor change to docs

* changed style

* changed doc

* changed error slightly

* added remove to phrasem api

* error key already existed

* phrase matcher match code to api

* blacked tests

* moved comments before expr

* corrected error no

* Update website/docs/api/entityruler.md

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update website/docs/api/entityruler.md

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-12-06 15:32:49 +01:00
Natalia Rodnova
472740d613
Added sents property to Span for Spans spanning over several sentences (#9699)
* Added sents property to Span class that returns a generator of sentences the Span belongs to

* Added description to Span.sents property

* Update test_span to clarify the difference between span.sent and span.sents

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/tests/doc/test_span.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Fix documentation typos in spacy/tokens/span.pyx

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update Span.sents doc string in spacy/tokens/span.pyx

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Parametrized test_span_spans

* Corrected Span.sents to check for span-level hook first. Also, made Span.sent respect doc-level sents hook if no span-level hook is provided

* Corrected Span ocumentation copy/paste issue

* Put back accidentally deleted lines

* Fixed formatting in span.pyx

* Moved check for SENT_START annotation after user hooks in Span.sents

* add version where the property was introduced

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-12-06 09:58:01 +01:00
Lj Miranda
7d50804644
Migrate regression tests into the main test suite (#9655)
* Migrate regressions 1-1000

* Move serialize test to correct file

* Remove tests that won't work in v3

* Migrate regressions 1000-1500

Removed regression test 1250 because v3 doesn't support the old LEX
scheme anymore.

* Add missing imports in serializer tests

* Migrate tests 1500-2000

* Migrate regressions from 2000-2500

* Migrate regressions from 2501-3000

* Migrate regressions from 3000-3501

* Migrate regressions from 3501-4000

* Migrate regressions from 4001-4500

* Migrate regressions from 4501-5000

* Migrate regressions from 5001-5501

* Migrate regressions from 5501 to 7000

* Migrate regressions from 7001 to 8000

* Migrate remaining regression tests

* Fixing missing imports

* Update docs with new system [ci skip]

* Update CONTRIBUTING.md

- Fix formatting
- Update wording

* Remove lemmatizer tests in el lang

* Move a few tests into the general tokenizer

* Separate Doc and DocBin tests
2021-12-04 20:34:48 +01:00
Sofie Van Landeghem
58e29776bd
Merge pull request #9777 from explosion/master
Update develop with master
2021-11-30 14:01:23 +01:00
Duygu Altinok
29f28d1f3e
French NP review (#9667)
* adapted from pt

* added basic tests

* added fr vocab

* fixed noun chunks

* more examples

* typo fix

* changed naming

* changed the naming

* typo fix
2021-11-30 12:19:07 +01:00
Narayan Acharya
1be8a4dab3
Displacy serve entity linking support without manual=True support. (#9748)
* Add support for kb_id to be displayed via displacy.serve. The current support is only limited to the manual option in displacy.render

* Commit to check pre-commit hooks are run.

* Update spacy/displacy/__init__.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Changes as per suggestions on the PR.

* Update website/docs/api/top-level.md

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update website/docs/api/top-level.md

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* tag option as new from 3.2.1 onwards

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2021-11-29 17:13:26 +01:00
Paul O'Leary McCann
ac05de2c6c
Fix Language-specific factory handling in package command (#9674)
* Use internal names for factories

If a component factory is registered like `@French.factory(...)` instead
of `@Language.factory(...)`, the name in the factories registry will be
prefixed with the language code. However in the nlp.config object the
factory will be listed without the language code. The `add_pipe` code
has fallback logic to handle this, but packaging code and the registry
itself don't.

This change makes it so that the factory name in nlp.config is the
language-specific form. It's not clear if this will break anything else,
but it does seem to fix the inconsistency and resolve the specific user
issue that brought this to our attention.

* Change approach to use fallback in package lookup

This adds fallback logic to the package lookup, so it doesn't have to
touch the way the config is built. It seems to fix the tests too.

* Remove unecessary line

* Add test

Thsi also adds an assert that seems to have been forgotten.
2021-11-29 08:31:02 +01:00
Richard Hudson
7b134b8fbd
New tests for a number of alpha languages (#9703)
* Added Slovak

* Added Slovenian tests

* Added Estonian tests

* Added Croatian tests

* Added Latvian tests

* Added Icelandic tests

* Added Afrikaans tests

* Added language-independent tests

* Added Kannada tests

* Tidied up

* Added Albanian tests

* Formatted with black

* Added failing tests for anomalies

* Update spacy/tests/lang/af/test_text.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Estonian tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Croatian tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Icelandic tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Latvian tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Slovak tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Slovenian tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-11-28 21:59:23 +01:00
Natalia Rodnova
a4c43e5c57
Allow Matcher to match on ENT_ID and ENT_KB_ID (#9688)
* Added ENT_ID and ENT_KB_ID into the list of the attributes that Matcher matches on

* Added ENT_ID and ENT_KB_ID to TEST_PATTERNS in test_pattern_validation.py. Disabled tests that I added before

* Update website/docs/api/matcher.md

* Format

* Remove skipped tests

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-11-24 10:37:10 +01:00
Duygu Altinok
25bd9f9d48
Noun chunks for Italian (#9662)
* added it vocab

* copied portuguese

* added possessive determiner

* added conjed Nps

* added nmoded Nps

* test misc

* more examples

* fixed typo

* fixed parenth

* fixed comma

* comma fix

* added syntax iters

* fix some index problems

* fixed index

* corrected heads for test case

* fixed tets case

* fixed determiner gender

* cleaned left over

* added example with apostophe
2021-11-23 16:29:25 +01:00
Duygu Altinok
a7d7e80adb
EntityRuler improve disk load error message (#9658)
* added error string

* added serialization test

* added more to if statements

* wrote file to tempdir

* added tempdir

* changed parameter a bit

* Update spacy/tests/pipeline/test_entity_ruler.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-11-23 16:26:05 +01:00
Adriane Boyd
9ac6d4991e
Add doc_cleaner component (#9659)
* Add doc_cleaner component

* Fix types

* Fix loop

* Rephrase method description
2021-11-23 15:33:33 +01:00
Adriane Boyd
c9baf9d196
Fix spancat for empty docs and zero suggestions (#9654)
* Fix spancat for empty docs and zero suggestions

* Use ops.xp.zeros in test
2021-11-15 12:40:55 +01:00
Sofie Van Landeghem
c97f29c593
Merge pull request #9629 from ljvmiranda921/chore/migrate-regressions
Migrate regression and other tests to the new pytest marker
2021-11-08 09:07:38 +01:00
Lj Miranda
909177589d Remove utility script 2021-11-06 06:35:58 +08:00
Adriane Boyd
0fc3dee772
Merge pull request #9596 from adrianeboyd/tests/reenable-v3.2.0-tests
Reenable tests for v3.2.0
2021-11-05 10:54:30 +01:00
Adriane Boyd
e6f91b6f27
Format (#9630) 2021-11-05 09:56:26 +01:00
Lj Miranda
8e7deaf210 Add missing imports in some regression tests
- test_issue7001-8000.py
- test_issue8190.py
2021-11-05 11:47:59 +08:00
Lj Miranda
addeb34bc4 Decorate regression tests
Even if the issue number is already in the file, I still
decorated them just to follow the convention found in test_issue8168.py
2021-11-05 11:47:44 +08:00
Lj Miranda
91dec2c76e Decorate non-regression tests 2021-11-05 11:47:33 +08:00
Lj Miranda
199943deb4 Add simple script to add pytest marks 2021-11-05 11:47:28 +08:00
Duygu Altinok
f0e8c9fe58
Spanish noun chunks review (#9537)
* updated syntax iters

* formatted the code

* added prepositional objects

* code clean up

* eliminated left attached adp

* added es vocab

* added basic tests

* fixed typo

* fixed typo

* list to set

* fixed doc name

* added code for conj

* more tests

* differentiated adjectives and flat

* fixed typo

* added compounds

* more compounds

* tests for compounds

* tests for nominal modifiers

* fixed typo

* fixed typo

* formatted file

* reformatted tests

* fixed typo

* fixed punct typo

* formatted after changes

* added indirect object

* added full sentence examples

* added longer full sentence examples

* fixed sentence length of test

* added passive subj

* added test case by Damian
2021-11-05 00:46:36 +01:00
Duygu Altinok
6e6650307d
Portuguese noun chunks review (#9559)
* added tests

* added pt vocab

* transferred spanish

* added syntax iters

* fixed parenthesis

* added nmod example

* added relative pron

* fixed rel pron

* added rel subclause

* corrected typo

* added more NP chains

* long sentence

* fixed typo

* fixed typo

* fixed typo

* corrected heads

* added passive subj

* added pass subj

* added passive obj

* refinement to rights

* went back to odl

* fixed test

* fixed typo

* fixed typo

* formatted

* Format

* Format test cases

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-11-04 23:55:49 +01:00
Adriane Boyd
07dea324f6 Merge remote-tracking branch 'upstream/develop' into chore/switch-to-master-v3.2.0 2021-11-03 15:32:18 +01:00
Bram Vanroy
cab9209c3d
use metaclass to decorate errors (#9593) 2021-11-03 15:29:32 +01:00
Adriane Boyd
db0d8c56d0
Add test for Language.pipe as_tuples with custom error handlers (#9608)
* make nlp.pipe() return None docs when no exceptions are (re-)raised during error handling

* Remove changes other than as_tuples test

* Only check warning count for one process

* Fix types

* Format

Co-authored-by: Xi Bai <xi.bai.ed@gmail.com>
2021-11-03 10:57:34 +01:00
Adriane Boyd
6eee024ff6
Pickle Doc._context (#9603) 2021-11-03 09:14:29 +01:00
Adriane Boyd
4d5db737e9 Revert "Temporarily skip compat tests (#9594)"
This reverts commit 667572adca.
2021-11-02 14:24:06 +01:00
Adriane Boyd
667572adca
Temporarily skip compat tests (#9594) 2021-11-02 14:10:48 +01:00
Lj Miranda
f1bc655a38
Add initial Tagalog (tl) tests (#9582)
* Add tl_tokenizer to test fixtures

* Add tagalog tests
2021-11-02 08:35:49 +01:00
Adriane Boyd
2d430958e1 Merge remote-tracking branch 'upstream/master' into chore/update-develop-from-master-v3.2-3 2021-10-29 12:18:15 +02:00
Adriane Boyd
5477453ea3
Docs for thinc-apple-ops (#9549)
* Docs for thinc-apple-ops

* Ignore thinc-apple-ops in reqs tests

* Fix install quickstart

* Add cupy cuda 113, 114 extras

* Remove draft section

Co-authored-by: Ines Montani <ines@ines.io>
2021-10-29 10:35:31 +02:00
Adriane Boyd
12974bf4d9
Add micro PRF for morph scoring (#9546)
* Add micro PRF for morph scoring

For pipelines where morph features are added by more than one component
and a reference training corpus may not contain all features, a micro
PRF score is more flexible than a simple accuracy score. An example is
the reading and inflection features added by the Japanese tokenizer.

* Use `morph_micro_f` as the default morph score for Japanese
morphologizers.

* Update docstring

* Fix typo in docstring

* Update Scorer API docs

* Fix results type

* Organize score list by attribute prefix
2021-10-29 10:29:29 +02:00
Adriane Boyd
c053f158c5
Add support for floret vectors (#8909)
* Add support for fasttext-bloom hash-only vectors

Overview:

* Extend `Vectors` to have two modes: `default` and `ngram`
  * `default` is the default mode and equivalent to the current
    `Vectors`
  * `ngram` supports the hash-only ngram tables from `fasttext-bloom`
* Extend `spacy.StaticVectors.v2` to handle both modes with no changes
  for `default` vectors
* Extend `spacy init vectors` to support ngram tables

The `ngram` mode **only** supports vector tables produced by this
fork of fastText, which adds an option to represent all vectors using
only the ngram buckets table and which uses the exact same ngram
generation algorithm and hash function (`MurmurHash3_x64_128`).
`fasttext-bloom` produces an additional `.hashvec` table, which can be
loaded by `spacy init vectors --fasttext-bloom-vectors`.

https://github.com/adrianeboyd/fastText/tree/feature/bloom

Implementation details:

* `Vectors` now includes the `StringStore` as `Vectors.strings` so that
  the API can stay consistent for both `default` (which can look up from
  `str` or `int`) and `ngram` (which requires `str` to calculate the
  ngrams).

* In ngram mode `Vectors` uses a default `Vectors` object as a cache
  since the ngram vectors lookups are relatively expensive.

  * The default cache size is the same size as the provided ngram vector
    table.

  * Once the cache is full, no more entries are added. The user is
    responsible for managing the cache in cases where the initial
    documents are not representative of the texts.

  * The cache can be resized by setting `Vectors.ngram_cache_size` or
    cleared with `vectors._ngram_cache.clear()`.

* The API ends up a bit split between methods for `default` and for
  `ngram`, so functions that only make sense for `default` or `ngram`
  include warnings with custom messages suggesting alternatives where
  possible.

* `Vocab.vectors` becomes a property so that the string stores can be
  synced when assigning vectors to a vocab.

* `Vectors` serializes its own config settings as `vectors.cfg`.

* The `Vectors` serialization methods have added support for `exclude`
  so that the `Vocab` can exclude the `Vectors` strings while serializing.

Removed:

* The `minn` and `maxn` options and related code from
  `Vocab.get_vector`, which does not work in a meaningful way for default
  vector tables.

* The unused `GlobalRegistry` in `Vectors`.

* Refactor to use reduce_mean

Refactor to use reduce_mean and remove the ngram vectors cache.

* Rename to floret

* Rename to floret in error messages

* Use --vectors-mode in CLI, vector init

* Fix vectors mode in init

* Remove unused var

* Minor API and docstrings adjustments

* Rename `--vectors-mode` to `--mode` in `init vectors` CLI
* Rename `Vectors.get_floret_vectors` to `Vectors.get_batch` and support
  both modes.
* Minor updates to Vectors docstrings.

* Update API docs for Vectors and init vectors CLI

* Update types for StaticVectors
2021-10-27 14:08:31 +02:00
Adriane Boyd
0c97ed2746
Rename ja morph features to Inflection and Reading (#9520)
* Rename ja morph features to Inflection and Reading
2021-10-27 13:13:03 +02:00
Adriane Boyd
2ea9b58006
Ignore prefix in suffix matches (#9155)
* Ignore prefix in suffix matches

Ignore the currently matched prefix when looking for suffix matches in
the tokenizer. Otherwise a lookbehind in the suffix pattern may match
incorrectly due the presence of the prefix in the token string.

* Move °[cfkCFK]. to a tokenizer exception

* Adjust exceptions for same tokenization as v3.1

* Also update test accordingly

* Continue to split . after °CFK if ° is not a prefix

* Exclude new ° exceptions for pl

* Switch back to default tokenization of "° C ."

* Revert "Exclude new ° exceptions for pl"

This reverts commit 952013a5b4.

* Add exceptions for °C for hu
2021-10-27 13:02:25 +02:00
Adriane Boyd
386dcada1c
Address random results in slow readers tests (#9544)
* Set random seed for dataset shuffling
* Use more dev examples for non-zero scores
2021-10-26 16:53:10 +02:00
Adriane Boyd
a803af9dfa Merge remote-tracking branch 'upstream/master' into chore/update-develop-from-master-v3.2-1 2021-10-26 11:53:50 +02:00
github-actions[bot]
b0b115ff39
Auto-format code with black (#9530)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2021-10-22 13:03:10 +02:00
Daniël de Kok
f31ac6fd4f
Print a warning when multiprocessing is used on a GPU (#9475)
* Raise an error when multiprocessing is used on a GPU

As reported in #5507, a confusing exception is thrown when
multiprocessing is used with a GPU model and the `fork` multiprocessing
start method:

cupy.cuda.runtime.CUDARuntimeError: cudaErrorInitializationError: initialization error

This change checks whether one of the models uses the GPU when
multiprocessing is used. If so, raise a friendly error message.

Even though multiprocessing can work on a GPU with the `spawn` method,
it quickly runs the GPU out-of-memory on real-world data. Also,
multiprocessing on a single GPU typically does not provide large
performance gains.

* Move GPU multiprocessing check to Language.pipe

* Warn rather than error when using multiprocessing with GPU models

* Improve GPU multiprocessing warning message.

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Reduce API assumptions

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update spacy/language.py

* Update spacy/language.py

* Test that warning is thrown with GPU + multiprocessing

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-10-21 16:14:23 +02:00
Sofie Van Landeghem
5a38f79f18
Custom component types in spacy.ty (#9469)
* add custom protocols in spacy.ty

* add a test for the new types in spacy.ty

* import Example when type checking

* some type fixes

* put Protocol in compat

* revert update check back to hasattr

* runtime_checkable in compat as well
2021-10-21 15:31:06 +02:00
Ines Montani
ad9f57cbbf Allow conftest.py to run twice for build envs 2021-10-19 15:13:25 +02:00
Sofie Van Landeghem
da578c3d3b
Fix kb.set_entities (#9463)
* avoid creating _vectors_table when also using c_add_vector

* write to self._vectors_table directly in set_entities
2021-10-19 09:39:17 +02:00
Adriane Boyd
271e8e7856
Skip compat table tests for prerelease versions (#9476) 2021-10-15 14:28:02 +02:00
github-actions[bot]
29e83f0819
Auto-format code with black (#9474)
* Auto-format code with black

* Update spacy/pipeline/pipe.pyi

Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-10-15 11:36:49 +02:00
Connor Brinton
657af5f91f
🏷 Add Mypy check to CI and ignore all existing Mypy errors (#9167)
* 🚨 Ignore all existing Mypy errors

* 🏗 Add Mypy check to CI

* Add types-mock and types-requests as dev requirements

* Add additional type ignore directives

* Add types packages to dev-only list in reqs test

* Add types-dataclasses for python 3.6

* Add ignore to pretrain

* 🏷 Improve type annotation on `run_command` helper

The `run_command` helper previously declared that it returned an
`Optional[subprocess.CompletedProcess]`, but it isn't actually possible
for the function to return `None`. These changes modify the type
annotation of the `run_command` helper and remove all now-unnecessary
`# type: ignore` directives.

* 🔧 Allow variable type redefinition in limited contexts

These changes modify how Mypy is configured to allow variables to have
their type automatically redefined under certain conditions. The Mypy
documentation contains the following example:

```python
def process(items: List[str]) -> None:
    # 'items' has type List[str]
    items = [item.split() for item in items]
    # 'items' now has type List[List[str]]
    ...
```

This configuration change is especially helpful in reducing the number
of `# type: ignore` directives needed to handle the common pattern of:
* Accepting a filepath as a string
* Overwriting the variable using `filepath = ensure_path(filepath)`

These changes enable redefinition and remove all `# type: ignore`
directives rendered redundant by this change.

* 🏷 Add type annotation to converters mapping

* 🚨 Fix Mypy error in convert CLI argument verification

* 🏷 Improve type annotation on `resolve_dot_names` helper

* 🏷 Add type annotations for `Vocab` attributes `strings` and `vectors`

* 🏷 Add type annotations for more `Vocab` attributes

* 🏷 Add loose type annotation for gold data compilation

* 🏷 Improve `_format_labels` type annotation

* 🏷 Fix `get_lang_class` type annotation

* 🏷 Loosen return type of `Language.evaluate`

* 🏷 Don't accept `Scorer` in `handle_scores_per_type`

* 🏷 Add `string_to_list` overloads

* 🏷 Fix non-Optional command-line options

* 🙈 Ignore redefinition of `wandb_logger` in `loggers.py`

*  Install `typing_extensions` in Python 3.8+

The `typing_extensions` package states that it should be used when
"writing code that must be compatible with multiple Python versions".
Since SpaCy needs to support multiple Python versions, it should be used
when newer `typing` module members are required. One example of this is
`Literal`, which is available starting with Python 3.8.

Previously SpaCy tried to import `Literal` from `typing`, falling back
to `typing_extensions` if the import failed. However, Mypy doesn't seem
to be able to understand what `Literal` means when the initial import
means. Therefore, these changes modify how `compat` imports `Literal` by
always importing it from `typing_extensions`.

These changes also modify how `typing_extensions` is installed, so that
it is a requirement for all Python versions, including those greater
than or equal to 3.8.

* 🏷 Improve type annotation for `Language.pipe`

These changes add a missing overload variant to the type signature of
`Language.pipe`. Additionally, the type signature is enhanced to allow
type checkers to differentiate between the two overload variants based
on the `as_tuple` parameter.

Fixes #8772

*  Don't install `typing-extensions` in Python 3.8+

After more detailed analysis of how to implement Python version-specific
type annotations using SpaCy, it has been determined that by branching
on a comparison against `sys.version_info` can be statically analyzed by
Mypy well enough to enable us to conditionally use
`typing_extensions.Literal`. This means that we no longer need to
install `typing_extensions` for Python versions greater than or equal to
3.8! 🎉

These changes revert previous changes installing `typing-extensions`
regardless of Python version and modify how we import the `Literal` type
to ensure that Mypy treats it properly.

* resolve mypy errors for Strict pydantic types

* refactor code to avoid missing return statement

* fix types of convert CLI command

* avoid list-set confustion in debug_data

* fix typo and formatting

* small fixes to avoid type ignores

* fix types in profile CLI command and make it more efficient

* type fixes in projects CLI

* put one ignore back

* type fixes for render

* fix render types - the sequel

* fix BaseDefault in language definitions

* fix type of noun_chunks iterator - yields tuple instead of span

* fix types in language-specific modules

* 🏷 Expand accepted inputs of `get_string_id`

`get_string_id` accepts either a string (in which case it returns its 
ID) or an ID (in which case it immediately returns the ID). These 
changes extend the type annotation of `get_string_id` to indicate that 
it can accept either strings or IDs.

* 🏷 Handle override types in `combine_score_weights`

The `combine_score_weights` function allows users to pass an `overrides` 
mapping to override data extracted from the `weights` argument. Since it 
allows `Optional` dictionary values, the return value may also include 
`Optional` dictionary values.

These changes update the type annotations for `combine_score_weights` to 
reflect this fact.

* 🏷 Fix tokenizer serialization method signatures in `DummyTokenizer`

* 🏷 Fix redefinition of `wandb_logger`

These changes fix the redefinition of `wandb_logger` by giving a 
separate name to each `WandbLogger` version. For 
backwards-compatibility, `spacy.train` still exports `wandb_logger_v3` 
as `wandb_logger` for now.

* more fixes for typing in language

* type fixes in model definitions

* 🏷 Annotate `_RandomWords.probs` as `NDArray`

* 🏷 Annotate `tok2vec` layers to help Mypy

* 🐛 Fix `_RandomWords.probs` type annotations for Python 3.6

Also remove an import that I forgot to move to the top of the module 😅

* more fixes for matchers and other pipeline components

* quick fix for entity linker

* fixing types for spancat, textcat, etc

* bugfix for tok2vec

* type annotations for scorer

* add runtime_checkable for Protocol

* type and import fixes in tests

* mypy fixes for training utilities

* few fixes in util

* fix import

* 🐵 Remove unused `# type: ignore` directives

* 🏷 Annotate `Language._components`

* 🏷 Annotate `spacy.pipeline.Pipe`

* add doc as property to span.pyi

* small fixes and cleanup

* explicit type annotations instead of via comment

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: svlandeg <svlandeg@github.com>
2021-10-14 15:21:40 +02:00
Adriane Boyd
d98d525bc8 Merge remote-tracking branch 'upstream/master' into chore/update-develop-from-master-v3.1-3 2021-10-14 09:41:46 +02:00
Paul O'Leary McCann
a3b7519aba
Fix JA Morph Values (#9449)
* Don't set empty / weird values in morph

* Update tests to handy empty morph values

* Fix everything

* Replace potentially problematic characters

* Fix test
2021-10-14 09:21:36 +02:00
Ines Montani
c48564688f
Merge pull request #9423 from explosion/tests/issue-marker 2021-10-13 16:53:40 +02:00
Jette16
78365452d3
Moved test for universe into .github folder (#9447)
* Moved universe-test into .github folder

* Cleaned code

* CHanged a file name
2021-10-13 14:13:06 +02:00
Sofie Van Landeghem
2e3d6b8b5a
Fix test for spancat (#9446)
* fix test for spancat

* increase tolerance for almost equal checks

* Update spacy/tests/test_models.py

* Update spacy/tests/test_models.py
2021-10-13 10:47:56 +02:00
Paul O'Leary McCann
efe5beefe0
Add test for case where parser overwrite annotations (#9406)
* Add test for case where parser overwrite annotations

* Move test to its own file

Also add note about how other tokens modify results.

* Fix xfail decorator
2021-10-11 14:57:45 +02:00
Ines Montani
1fa7c4e73b Support issue marker via pytest 2021-10-11 13:56:24 +02:00
Jette16
3b144a3a51 Add universe test (#9278)
* Added test for universe.json

* Added contributor agreement

* Ran black on test_universe_json.py
2021-10-11 11:08:46 +02:00
Paul O'Leary McCann
2a7e327310
Fix Dependency Matcher Ordering Issue (#9337)
* Fix inconsistency

This makes the failing test pass, so that behavior is consistent whether
patterns are added in one call or two.

The issue is that the hash for patterns depended on the index of the
pattern in the list of current patterns, not the list of total patterns,
so a second call would get identical match ids.

* Add illustrative test case

* Add failing test for remove case

Patterns are not removed from the internal matcher on calls to remove,
which causes spurious weird matches (or misses).

* Fix removal issue

Remove patterns from the internal matcher.

* Check that the single add call also gets no matches
2021-10-11 10:26:13 +02:00
Paul O'Leary McCann
113d53ab6c
Fix tests for changes to inflection structure (#9390) 2021-10-07 13:42:18 +02:00