Commit Graph

7330 Commits

Author SHA1 Message Date
Ines Montani
d51db72e46 Remove Python 2 marker 2020-07-20 15:01:36 +02:00
Ines Montani
644074b954 Merge branch 'develop' into master-tmp 2020-07-20 14:58:04 +02:00
Sofie Van Landeghem
c9da9605f7
Test suite clean up (#5781)
* step_through tests: skip instead of xfail

* test_empty_doc should be fixed with new Thinc version

* remove outdated test (there are other misaligned tests now)

* xfail reason

* fix test according to french exceptions

* clarified some skipped tests

* skip ukranian test instead of xfail

* skip instead of xfail

* skip + reason instead of xfail

* removed obsolete tests referring to removed "set_frozen" functionality

* fix test 999

* remove unused AlignmentError

* remove xfail where possible, skip otherwise

* increment thinc release for empty_doc test
2020-07-20 14:49:54 +02:00
Sofie Van Landeghem
1b2ec94382
Hyphen infix (#5770)
* infix split on hyphen when preceded by number

* clean up

* skip ukranian test instead of xfail
2020-07-20 14:48:51 +02:00
Adriane Boyd
ec819fc311
Provide default output for evaluate in CLI (#5784) 2020-07-20 14:42:46 +02:00
Ines Montani
cb65b36839
Merge pull request #5767 from adrianeboyd/feature/remove-tag-maps 2020-07-19 15:15:34 +02:00
Ines Montani
fa3c98f8b3 Update train.py 2020-07-19 13:40:47 +02:00
Ines Montani
796f6c52d1 Merge branch 'develop' into pr/5767 2020-07-19 13:37:46 +02:00
Adriane Boyd
39ebcd9ec9
Refactor Chinese tokenizer configuration (#5736)
* Refactor Chinese tokenizer configuration

Refactor `ChineseTokenizer` configuration so that it uses a single
`segmenter` setting to choose between character segmentation, jieba, and
pkuseg.

* replace `use_jieba`, `use_pkuseg`, `require_pkuseg` with the setting
`segmenter` with the supported values: `char`, `jieba`, `pkuseg`
* make the default segmenter plain character segmentation `char` (no
additional libraries required)

* Fix Chinese serialization test to use char default

* Warn if attempting to customize other segmenter

Add a warning if `Chinese.pkuseg_update_user_dict` is called when
another segmenter is selected.
2020-07-19 13:34:37 +02:00
Adriane Boyd
9ee1c54f40
Improve tag map initialization and updating (#5764)
* Improve tag map initialization and updating

Generalize tag map initialization and updating so that the tag map can
be loaded correctly prior to loading a `Corpus` with `spacy debug-data`
and `spacy train`.

* normalize provided tag map as necessary
* use the same method for initializing and updating the tag map

* Replace rather than update tag map

Replace rather than update tag map when loading a custom tag map.
Updating the tag map is problematic due to the sorted list of tag names
and the fact that the tag map will contain lingering/unwanted tags from
the default tag map.

* Update CLI scripts

* Reinitialize cache after loading new tag map

Reinitialize the cache with the right size after loading a new tag map.
2020-07-19 13:13:57 +02:00
Adriane Boyd
597bcc629e
Improve tag map initialization and updating (#5768)
* Improve tag map initialization and updating

Generalize tag map initialization and updating so that a provided tag
map can be loaded correctly in the CLI.

* normalize provided tag map as necessary
* use the same method for initializing and overwriting the tag map

* Reinitialize cache after loading new tag map

Reinitialize the cache with the right size after loading a new tag map.
2020-07-19 11:13:39 +02:00
Adriane Boyd
b81a89f0a9
Update morphologizer (#5766)
* update `Morphologizer.begin_training` for use with `Example`

* make init and begin_training more consistent

* add `Morphology.normalize_features` to normalize outside of
`Morphology.add`

* make sure `get_loss` doesn't create unknown labels when the POS and
morph alignments differ
2020-07-19 11:10:51 +02:00
Adriane Boyd
cd5af72c9a
Update pkuseg version (#5774)
* Update pkuseg version in Chinese tokenizer warnings
* Update pkuseg version in `Makefile`
* Remove warning about python3.8 wheels in docs
2020-07-19 11:09:49 +02:00
Adriane Boyd
50db3f0cdb Serialize morph rules with tagger
Serialize `morph_rules` with the tagger alongside the `tag_map`.

Use `Morphology.load_tag_map` and `Morphology.load_morph_exceptions` to
load these settings rather than reinitializing the morphology each time
they are changed.
2020-07-17 08:22:21 +02:00
Adriane Boyd
d106cf66dd Update Morphology to load exceptions as MORPH_RULES
Update `Morphology` to load exceptions in `Morphology.__init__` and
`Morphology.load_morph_exceptions` from the format used in `MORPH_RULES`
rather than the internal format with tuple keys.

* Rename to `Morphology.exc` to `Morphology._exc` for internal use with
tuple keys
* Add `Morphology.exc` as a property that converts the internal `_exc`
back to `MORPH_RULES` format, primarily for serialization
2020-07-16 21:16:49 +02:00
Adriane Boyd
d83e3c44c5 Remove corpus-specific morph rules
* Remove corpus-specific morph rules
* Add options similar to tag maps to provide them in the `train` and
`debug-data` CLIs
2020-07-15 19:44:18 +02:00
Adriane Boyd
2f981d5af1 Remove corpus-specific tag maps
Remove corpus-specific tag maps from the language data for languages
without custom tokenizers. For languages with custom word segmenters
that also provide tags (Japanese and Korean), the tag maps for the
custom tokenizers are kept as the default.

The default tag maps for languages without custom tokenizers are now the
default tag map from `lang/tag_map/py`, UPOS -> UPOS.
2020-07-15 15:58:29 +02:00
Adriane Boyd
5228920e2f
Clarify warning W030 for misaligned BILUO tags (#5761) 2020-07-14 14:09:48 +02:00
Adriane Boyd
a7a7e0d2a6
Add morph to morphology in Doc.from_array (#5762)
* Add morph to morphology in Doc.from_array

Add morphological analyses to morphology table in `Doc.from_array`.

* Use separate vocab in DocBin roundtrip test
2020-07-14 14:07:35 +02:00
Ines Montani
872938ec76
Merge pull request #5747 from explosion/feature/refactor-config-args 2020-07-14 00:00:22 +02:00
Sofie Van Landeghem
6f3bb6f77c
fix doc.to_utf8 on GPU (#5757) 2020-07-13 23:05:33 +02:00
Adriane Boyd
7ea2cc7650
Set version to 2.3.2 (#5756) 2020-07-13 14:55:56 +02:00
Mark Neumann
27a1cd3c63
fix meta serialization in train (#5751)
Co-authored-by: Mark Neumann <markng@allenai.org>
2020-07-12 22:06:46 +02:00
Ines Montani
ed55143c0d Merge branch 'develop' into compat/remove-object-subclass 2020-07-12 14:28:52 +02:00
Ines Montani
7906ddd56c Fix test 2020-07-12 14:28:34 +02:00
Ines Montani
5f6f4ff594 Remove object subclassing 2020-07-12 14:03:23 +02:00
Ines Montani
c96535e338 Update command docstrings and docs 2020-07-12 13:53:49 +02:00
Ines Montani
0ab483037c Make debug commands subcommands of spacy debug
Also handle backwards-compatibility so the old commands don't break
2020-07-12 13:53:41 +02:00
Ines Montani
8a67ddd6f1 Remove unused import 2020-07-12 12:32:24 +02:00
Ines Montani
d1d7fd5f5d Don't use file paths in schemas
It should be possible to validate top-level config with file paths that don't exist
2020-07-12 12:32:08 +02:00
Ines Montani
79346853aa Add debug-config command 2020-07-12 12:31:17 +02:00
Ines Montani
3a8632c3fb Hide command from public --help for now
Not sure we want this to be officially documented yet?
2020-07-11 19:21:22 +02:00
Ines Montani
5e683d03fe Allow extra args on pretrain and debug_data 2020-07-11 19:17:59 +02:00
Ines Montani
b7111da1d7 Update config and commands 2020-07-11 13:03:53 +02:00
Ines Montani
f99ce7fbfb Make validation errors more elegant 2020-07-10 23:34:17 +02:00
Ines Montani
7b5717cac3 Merge branch 'develop' into feature/refactor-config-args 2020-07-10 22:50:07 +02:00
Matthew Honnibal
743f7fb73a Set version to v3.0.0a4 2020-07-10 22:40:12 +02:00
Matthew Honnibal
b68216e263
Explicitly delete objects after parser.update to free GPU memory (#5748)
* Try explicitly deleting objects

* Refactor parser model backprop slightly

* Free parser data explicitly after rehearse and update
2020-07-10 22:35:20 +02:00
Ines Montani
fb6f6f584e Replace - with _ in command names
We might as well be nice if user accidentally types --training.use-gpu
2020-07-10 22:34:22 +02:00
Ines Montani
bfa8e11ffa Update and auto-format 2020-07-10 20:52:00 +02:00
Ines Montani
0389c34b81 Merge branch 'develop' into feature/refactor-config-args 2020-07-10 20:51:52 +02:00
Ines Montani
931250e1f5 Fix pipeline component schema 2020-07-10 20:32:53 +02:00
Ines Montani
9fe1fa88ad Fix typo 2020-07-10 20:32:37 +02:00
Ines Montani
defe1e7213 Pretty-print config validation errors 2020-07-10 20:01:20 +02:00
Sofie Van Landeghem
de6a32315c
debug-model script (#5749)
* adding debug-model to print the internals for debugging purposes

* expend debug-model script with 4 stages: before, init, train, predict

* avoid enforcing to have a seed in the train script

* small fixes
2020-07-10 19:47:53 +02:00
Ines Montani
a3667394b4 Integrate with latest Thinc and config overrides 2020-07-10 19:47:05 +02:00
Ines Montani
5cfc3edcaa Update CLI tests 2020-07-10 18:21:01 +02:00
Ines Montani
3583ea84d8 Update arg parsing 2020-07-10 18:20:52 +02:00
Ines Montani
73332ddb67 Update CLI commans to use one shared util file 2020-07-10 17:57:40 +02:00
Ines Montani
240e0a62ca Update with WIP 2020-07-10 13:31:27 +02:00
Ines Montani
a60562f208
Update project CLI hashes, directories, skipping (#5741)
* Update project CLI hashes, directories, skipping

* Improve clone success message

* Remove unused context args

* Move project-specific utils to project utils

The hashing/checksum functions may not end up being general-purpose functions and are more designed for the projects, so they shouldn't live in spacy.util

* Improve run help and add workflows

* Add note re: directory checksum speed

* Fix cloning from subdirectories and output messages

* Remove hard-coded dirs
2020-07-09 23:51:18 +02:00
Adriane Boyd
0a62098c5f
Fix lemmatizer is_base_form for python2.7 (#5734)
* Fix lemmatizer init args for python2.7

* Move English is_base_form to a class method

* Skip test pickling PhraseMatcher for python2
2020-07-09 22:11:24 +02:00
Adriane Boyd
923affd091
Remove is_base_form from French lemmatizer (#5733)
Remove English-specific is_base_form from French lemmatizer.
2020-07-09 22:11:13 +02:00
Matthew Honnibal
552d1ad226 Hack at tests 2020-07-09 20:25:51 +02:00
Matthew Honnibal
eb064c59cd Try to fix textcat test 2020-07-09 20:24:53 +02:00
Ines Montani
018319a640 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-09 19:44:41 +02:00
Ines Montani
05e182e421 Update CLI args and docstrings 2020-07-09 19:44:28 +02:00
Sofie Van Landeghem
dd207a28be
cleanup components API (#5726)
* add keyword separator for update functions and drop unused "state"

* few more Example tests and various small fixes

* consistently return losses after update call

* eliminate unused tensors field across pipe components

* fix name

* fix arg name
2020-07-09 19:43:39 +02:00
Adriane Boyd
ac4297ee39
Minor refactor to conversion of output docs (#5718)
Minor refactor of conversion of docs to output format to avoid
duplicate conversion steps.
2020-07-09 19:42:32 +02:00
Sofie Van Landeghem
c1ea55307b
Fixing reproducible training (#5735)
* Add initial reproducibility tests

* failing test for default_text_classifier (WIP)

* track trouble to underlying tok2vec layer

* add regression test for Issue 5551

* tests go green with https://github.com/explosion/thinc/pull/359

* update test

* adding fixed seeds to HashEmbed layers, seems to fix the reproducility issue

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-07-09 19:39:31 +02:00
Matthew Honnibal
1827f22f56 Set version to v3.0.0a3 2020-07-09 19:38:04 +02:00
Matthw Honnibal
7010f1a2be Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-09 19:34:11 +02:00
Matthw Honnibal
77af0a6bb4 Offer option of padding-sensitive batching 2020-07-09 14:50:20 +02:00
Matthw Honnibal
3a7f275c02 Add extra batch util 2020-07-09 14:38:41 +02:00
Matthw Honnibal
eb0798c421 Add __len__ method for Example 2020-07-09 14:38:26 +02:00
Ines Montani
8f9552d9e7
Refactor project CLI (#5732)
* Make project command a submodule

* Update with WIP

* Add helper for joining commands

* Update docstrins, formatting and types

* Update assets and add support for copying local files

* Fix type

* Update success messages
2020-07-09 01:42:51 +02:00
Adriane Boyd
ad15499b3b
Fix get_loss for values outside of labels in senter (#5730)
* Fix get_loss for None alignments in senter

When converting the `sent_start` values back to `SentenceRecognizer`
labels, handle `None` alignments.

* Handle SENT_START as -1

Handle SENT_START as -1 (or -1 converted to uint64) by treating any
values other than 1 the same as 0 in `SentenceRecognizer.get_loss`.
2020-07-09 01:41:58 +02:00
Matthw Honnibal
1b20ffac38 batch_by_words by default 2020-07-08 21:37:06 +02:00
Matthw Honnibal
93e50da46a Remove auto 'set_annotation' in training to address GPU memory 2020-07-08 21:36:51 +02:00
Matthw Honnibal
fb8a5967c1 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-08 15:27:50 +02:00
Ines Montani
0a3d41bb1d
Deprecat model shortcuts and simplify download (#5722) 2020-07-08 14:00:07 +02:00
Adriane Boyd
c9f0f75778
Update get_loss for senter and morphologizer (#5724)
* Update get_loss for senter

Update `SentenceRecognizer.get_loss` to keep it similar to `Tagger`.

* Update get_loss for morphologizer

Update `Morphologizer.get_loss` to keep it similar to `Tagger`.
2020-07-08 13:59:28 +02:00
Matthw Honnibal
ca989f4cc4 Improve cutting logic in parser 2020-07-08 11:27:54 +02:00
Matthw Honnibal
42e1109def Support option to not batch by number of words 2020-07-08 11:26:54 +02:00
Ines Montani
8cb7f9ccff
Improve assets and DVC handling (#5719)
* Improve assets and DVC handling

* Remove outdated comment [ci skip]
2020-07-07 20:51:50 +02:00
Sofie Van Landeghem
a39a110c4e
Few more Example unit tests (#5720)
* small fixes in Example, UX

* add gold tests for aligned_spans and get_aligned_parse

* sentencizer unnecessary
2020-07-07 18:46:00 +02:00
Matthw Honnibal
433dc3c9c9 Simplify PrecomputableAffine slightly 2020-07-07 17:22:47 +02:00
Matthw Honnibal
a4164f67ca Don't normalize gradients 2020-07-07 17:21:58 +02:00
Matthw Honnibal
8177f25b6c Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-07 17:21:10 +02:00
Ines Montani
fa00a85828
Merge pull request #5715 from explosion/chore/tidy-regression-tests 2020-07-07 11:22:07 +02:00
Matthw Honnibal
d1fd3438c3 Add dropout to parser hidden layer 2020-07-07 01:38:15 +02:00
Matthw Honnibal
f25761e513 Dont randomize cuts in parser 2020-07-06 17:51:25 +02:00
Matthw Honnibal
709fc5e4ad Clarify dropout and seed in Tok2Vec 2020-07-06 17:50:21 +02:00
Matthew Honnibal
19d42f42de Set version to v3.0.0a2 2020-07-06 17:43:12 +02:00
Matthew Honnibal
cc477be952
Improve gold-standard alignment (#5711)
* Remove previous alignment

* Implement better alignment, using ragged data structure

* Use pytokenizations for alignment

* Fixes

* Fixes

* Fix overlapping entities in alignment

* Fix align split_sents

* Update test

* Commit align.py

* Try to appease setuptools

* Fix flake8

* use realistic entities for testing

* Update tests for better alignment

* Improve alignment heuristic

Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2020-07-06 17:39:31 +02:00
Mike Izbicki
7a2ca00794
fix bug in Korean language, resulting in 100x speedup by reducing overhead of mecab (#5701)
* speed up Korean nlp 100x by stopping mecab from reloading on each doc

* add contributor agreement

* rename variables to improve code readability
2020-07-06 17:03:33 +02:00
Ines Montani
b6deef80f8 Fix class to pickling works as expected 2020-07-06 16:43:45 +02:00
Ines Montani
fa261d09e8 Add alternative CLI option 2020-07-06 15:57:38 +02:00
Adriane Boyd
c67fc6aa5b
Make docs_to_json backwards-compatible with v2 (#5714)
* In `spacy convert -t json` output the JSON docs wrapped in a list

* Add back token-level `ner` alongside the doc-level `entities`
2020-07-06 14:15:00 +02:00
Ines Montani
5b7b2a498d Tidy up and merge regression tests 2020-07-06 14:05:59 +02:00
Ines Montani
412dbb1f38
Remove dead and/or deprecated code (#5710)
* Remove dead and/or deprecated code

* Remove n_threads

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-07-06 13:06:25 +02:00
Sofie Van Landeghem
fcbf899b08
Feature/example only (#5707)
* remove _convert_examples

* fix test_gold, raise TypeError if tuples are used instead of Example's

* throwing proper errors when the wrong type of objects are passed

* fix deprectated format in tests

* fix deprectated format in parser tests

* fix tests for NEL, morph, senter, tagger, textcat

* update regression tests with new Example format

* use make_doc

* more fixes to nlp.update calls

* few more small fixes for rehearse and evaluate

* only import ml_datasets if really necessary
2020-07-06 13:02:36 +02:00
graue70
9860b8399e
Fix typo in test function docstring (#5696) 2020-07-05 15:49:06 +02:00
Matthew Honnibal
3e78e82a83
Experimental character-based pretraining (#5700)
* Use cosine loss in Cloze multitask

* Fix char_embed for gpu

* Call resume_training for base model in train CLI

* Fix bilstm_depth default in pretrain command

* Implement character-based pretraining objective

* Use chars loss in ClozeMultitask

* Add method to decode predicted characters

* Fix number characters

* Rescale gradients for mlm

* Fix char embed+vectors in ml

* Fix pipes

* Fix pretrain args

* Move get_characters_loss

* Fix import

* Fix import

* Mention characters loss option in pretrain

* Remove broken 'self attention' option in pretrain

* Revert "Remove broken 'self attention' option in pretrain"

This reverts commit 56b820f6af.

* Document 'characters' objective of pretrain
2020-07-05 15:48:39 +02:00
Matthw Honnibal
3f6f087113 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-04 23:52:12 +02:00
Matthw Honnibal
5642507823 Fix has_unknown_spaces in Doc.copy 2020-07-04 23:52:02 +02:00
Matthw Honnibal
8870a6ded7 Specify seeds in HashEmbed 2020-07-04 23:51:49 +02:00
Ines Montani
37c3bb35e2 Auto-format 2020-07-04 16:25:34 +02:00
Ines Montani
abd173937f Auto-format and update URL 2020-07-04 14:23:44 +02:00
Ines Montani
99aff16d60 Make argument shortcut consistent 2020-07-04 14:23:32 +02:00