Commit Graph

1753 Commits

Author SHA1 Message Date
Ines Montani
387c7aba15 Update test 2020-05-24 14:55:16 +02:00
Ines Montani
4465cad6c5 Rename spacy.analysis to spacy.pipe_analysis 2020-05-22 17:42:06 +02:00
Ines Montani
25d6ed3fb8
Merge pull request #5489 from explosion/feature/connected-components 2020-05-22 17:40:11 +02:00
Ines Montani
841c05b47b
Merge pull request #5490 from explosion/fix/remove-jsonschema 2020-05-22 17:39:54 +02:00
Ines Montani
569a65b60e Auto-format 2020-05-22 16:55:42 +02:00
Ines Montani
d844528c5f Add test for is_compatible_model 2020-05-22 16:55:15 +02:00
Ines Montani
12b7be1d98 Remove jsonschema from dependencies 2020-05-22 16:49:26 +02:00
Matthew Honnibal
f7f6df7275 Move to spacy.analysis 2020-05-22 16:43:18 +02:00
Matthew Honnibal
78d79d94ce Guess set_annotations=True in nlp.update
During `nlp.update`, components can be passed a boolean set_annotations
to indicate whether they should assign annotations to the `Doc`. This
needs to be called if downstream components expect to use the
annotations during training, e.g. if we wanted to use tagger features in
the parser.

Components can specify their assignments and requirements, so we can
figure out which components have these inter-dependencies. After
figuring this out, we can guess whether to pass set_annotations=True.

We could also call set_annotations=True always, or even just have this
as the only behaviour. The downside of this is that it would require the
`Doc` objects to be created afresh to avoid problematic modifications.
One approach would be to make a fresh copy of the `Doc` objects within
`nlp.update()`, so that we can write to the objects without any
problems. If we do that, we can drop this logic and also drop the
`set_annotations` mechanism. I would be fine with that approach,
although it runs the risk of introducing some performance overhead, and
we'll have to take care to copy all extension attributes etc.
2020-05-22 15:55:45 +02:00
Ines Montani
6728747f71
Merge pull request #5486 from explosion/fix/compat-py2 2020-05-22 15:47:21 +02:00
Matthew Honnibal
f6078d866a
Merge pull request #5121 from adrianeboyd/bugfix/revert-token-match
Revert token_match priority changes from #4374 and extend token match options
2020-05-22 14:42:51 +02:00
Ines Montani
c685ee734a Fix compat for v2.x branch 2020-05-22 14:22:36 +02:00
Adriane Boyd
e4a1b5dab1 Rename to url_match
Rename to `url_match` and update docs.
2020-05-22 12:41:03 +02:00
Adriane Boyd
730fa493a4 Merge remote-tracking branch 'upstream/master' into bugfix/revert-token-match 2020-05-22 12:18:00 +02:00
Adriane Boyd
71fe61fdcd Disallow merging 0-length spans 2020-05-22 10:14:34 +02:00
Matthew Honnibal
93c4d13588
Merge pull request #5264 from lfiedler/issue-5230
Fix ResourceWarnings during unittest
2020-05-22 00:31:07 +02:00
Matthew Honnibal
e1cb7e838b
Merge pull request #5481 from explosion/feature/blank-shortcut-v2
Add blank:{lang} shortcut support to util.load_model
2020-05-22 00:08:23 +02:00
Ines Montani
cb02bff0eb Add blank:{lang} shortcut to util.load_mode 2020-05-21 20:24:07 +02:00
Ines Montani
581bda9f98 Update senter test and auto-format 2020-05-21 20:17:14 +02:00
Adriane Boyd
132b2a6898 Merge remote-tracking branch 'upstream/master-tmp' into HEAD 2020-05-21 19:50:30 +02:00
Adriane Boyd
17ee9ab53a Fix _SP/POS=SPACE in strings serialization tests 2020-05-21 19:49:08 +02:00
Ines Montani
245f91df78 Fix merge issues 2020-05-21 19:42:13 +02:00
svlandeg
84d5b7ad0a Merge remote-tracking branch 'upstream/master' into bugfix/noun-chunks
# Conflicts:
#	spacy/lang/el/syntax_iterators.py
#	spacy/lang/en/syntax_iterators.py
#	spacy/lang/fa/syntax_iterators.py
#	spacy/lang/fr/syntax_iterators.py
#	spacy/lang/id/syntax_iterators.py
#	spacy/lang/nb/syntax_iterators.py
#	spacy/lang/sv/syntax_iterators.py
2020-05-21 19:19:50 +02:00
Ines Montani
631e20d0c6 Fix test and schemas 2020-05-21 19:01:02 +02:00
Ines Montani
24f72c669c Merge branch 'develop' into master-tmp 2020-05-21 18:39:06 +02:00
Ines Montani
c6ec19c844 Add missing declaration 2020-05-21 17:30:05 +02:00
Ines Montani
bd6353715a Merge branch 'master' into fix/travis-tests 2020-05-21 14:23:04 +02:00
Ines Montani
d8f3190c0a Tidy up and auto-format 2020-05-21 14:14:01 +02:00
Ines Montani
56de520afd Try to fix tests on Travis (2.7) 2020-05-21 14:04:57 +02:00
svlandeg
36a94c409a failing test to reproduce overlapping spans problem 2020-05-20 23:06:03 +02:00
Adriane Boyd
4b229bfc22 Improve handling of NER in CoNLL-U MISC 2020-05-20 18:48:51 +02:00
Sofie Van Landeghem
7f5715a081
Various fixes to NEL functionality, Example class etc (#5460)
* setting KB in the EL constructor, similar to how the model is passed on

* removing wikipedia example files - moved to projects

* throw an error when nlp.update is called with 2 positional arguments

* rewriting the config logic in create pipe to accomodate for other objects (e.g. KB) in the config

* update config files with new parameters

* avoid training pipeline components that don't have a model (like sentencizer)

* various small fixes + UX improvements

* small fixes

* set thinc to 8.0.0a9 everywhere

* remove outdated comment
2020-05-20 11:41:12 +02:00
adrianeboyd
40e65d6f63
Fix most_similar for vectors with unused rows (#5348)
* Fix most_similar for vectors with unused rows

Address issues related to the unused rows in the vector table and
`most_similar`:

* Update `most_similar()` to search only through rows that are in use
according to `key2row`.

* Raise an error when `most_similar(n=n)` is larger than the number of
vectors in the table.

* Set and restore `_unset` correctly when vectors are added or
deserialized so that new vectors are added in the correct row.

* Set data and keys to the same length in `Vocab.prune_vectors()` to
avoid spurious entries in `key2row`.

* Fix regression test using `most_similar`

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-19 16:41:26 +02:00
Sofie Van Landeghem
f00de445dd
default models defined in component decorator (#5452)
* move defaults to pipeline and use in component decorator

* black formatting

* relative import
2020-05-19 16:20:03 +02:00
adrianeboyd
70da1fd2d6
Add warning for misaligned character offset spans (#5007)
* Add warning for misaligned character offset spans

* Resolve conflict

* Filter warnings in example scripts

Filter warnings in example scripts to show warnings once, in particular
warnings about misaligned entities.

Co-authored-by: Ines Montani <ines@ines.io>
2020-05-19 16:01:18 +02:00
adrianeboyd
0061992d95
Update Polish tokenizer for UD_Polish-PDB (#5432)
Update Polish tokenizer for UD_Polish-PDB, which is a relatively major
change from the existing tokenizer. Unused exceptions files and
conflicting test cases removed.

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-19 15:59:55 +02:00
adrianeboyd
a5cd203284
Reduce stored lexemes data, move feats to lookups (#5238)
* Reduce stored lexemes data, move feats to lookups

* Move non-derivable lexemes features (`norm / cluster / prob`) to
`spacy-lookups-data` as lookups
  * Get/set `norm` in both lookups and `LexemeC`, serialize in lookups
  * Remove `cluster` and `prob` from `LexemesC`, get/set/serialize in
    lookups only
* Remove serialization of lexemes data as `vocab/lexemes.bin`
  * Remove `SerializedLexemeC`
  * Remove `Lexeme.to_bytes/from_bytes`
* Modify normalization exception loading:
  * Always create `Vocab.lookups` table `lexeme_norm` for
    normalization exceptions
  * Load base exceptions from `lang.norm_exceptions`, but load
    language-specific exceptions from lookups
  * Set `lex_attr_getter[NORM]` including new lookups table in
    `BaseDefaults.create_vocab()` and when deserializing `Vocab`
* Remove all cached lexemes when deserializing vocab to override
  existing normalizations with the new normalizations (as a replacement
  for the previous step that replaced all lexemes data with the
  deserialized data)

* Skip English normalization test

Skip English normalization test because the data is now in
`spacy-lookups-data`.

* Remove norm exceptions

Moved to spacy-lookups-data.

* Move norm exceptions test to spacy-lookups-data

* Load extra lookups from spacy-lookups-data lazily

Load extra lookups (currently for cluster and prob) lazily from the
entry point `lg_extra` as `Vocab.lookups_extra`.

* Skip creating lexeme cache on load

To improve model loading times, do not create the full lexeme cache when
loading. The lexemes will be created on demand when processing.

* Identify numeric values in Lexeme.set_attrs()

With the removal of a special case for `PROB`, also identify `float` to
avoid trying to convert it with the `StringStore`.

* Skip lexeme cache init in from_bytes

* Unskip and update lookups tests for python3.6+

* Update vocab pickle to include lookups_extra

* Update vocab serialization tests

Check strings rather than lexemes since lexemes aren't initialized
automatically, account for addition of "_SP".

* Re-skip lookups test because of python3.5

* Skip PROB/float values in Lexeme.set_attrs

* Convert is_oov from lexeme flag to lex in vectors

Instead of storing `is_oov` as a lexeme flag, `is_oov` reports whether
the lexeme has a vector.

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-19 15:59:14 +02:00
Sofie Van Landeghem
0d94737857
Feature toggle_pipes (#5378)
* make disable_pipes deprecated in favour of the new toggle_pipes

* rewrite disable_pipes statements

* update documentation

* remove bin/wiki_entity_linking folder

* one more fix

* remove deprecated link to documentation

* few more doc fixes

* add note about name change to the docs

* restore original disable_pipes

* small fixes

* fix typo

* fix error number to W096

* rename to select_pipes

* also make changes to the documentation

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-18 22:27:10 +02:00
Matthew Honnibal
333b1a308b
Adapt parser and NER for transformers (#5449)
* Draft layer for BILUO actions

* Fixes to biluo layer

* WIP on BILUO layer

* Add tests for BILUO layer

* Format

* Fix transitions

* Update test

* Link in the simple_ner

* Update BILUO tagger

* Update __init__

* Import simple_ner

* Update test

* Import

* Add files

* Add config

* Fix label passing for BILUO and tagger

* Fix label handling for simple_ner component

* Update simple NER test

* Update config

* Hack train script

* Update BILUO layer

* Fix SimpleNER component

* Update train_from_config

* Add biluo_to_iob helper

* Add IOB layer

* Add IOBTagger model

* Update biluo layer

* Update SimpleNER tagger

* Update BILUO

* Read random seed in train-from-config

* Update use of normal_init

* Fix normalization of gradient in SimpleNER

* Update IOBTagger

* Remove print

* Tweak masking in BILUO

* Add dropout in SimpleNER

* Update thinc

* Tidy up simple_ner

* Fix biluo model

* Unhack train-from-config

* Update setup.cfg and requirements

* Add tb_framework.py for parser model

* Try to avoid memory leak in BILUO

* Move ParserModel into spacy.ml, avoid need for subclass.

* Use updated parser model

* Remove incorrect call to model.initializre in PrecomputableAffine

* Update parser model

* Avoid divide by zero in tagger

* Add extra dropout layer in tagger

* Refine minibatch_by_words function to avoid oom

* Fix parser model after refactor

* Try to avoid div-by-zero in SimpleNER

* Fix infinite loop in minibatch_by_words

* Use SequenceCategoricalCrossentropy in Tagger

* Fix parser model when hidden layer

* Remove extra dropout from tagger

* Add extra nan check in tagger

* Fix thinc version

* Update tests and imports

* Fix test

* Update test

* Update tests

* Fix tests

* Fix test

Co-authored-by: Ines Montani <ines@ines.io>
2020-05-18 22:23:33 +02:00
Ines Montani
a41e28ceba
Merge pull request #5436 from ilivans/fix_errors_with_codes 2020-05-18 10:45:56 +02:00
svlandeg
047f3d7d94 remove ops argument for Adam 2020-05-15 13:25:00 +02:00
adrianeboyd
780b869345
Fix syntax iterators for Persian (#5437) 2020-05-14 16:51:03 +02:00
Ilia Ivanov
712d9d4820 fixup! Fix ErrorsWithCodes().__class__ return value 2020-05-14 15:45:58 +02:00
Ilia Ivanov
a987e9e45d Fix ErrorsWithCodes().__class__ return value 2020-05-14 14:14:15 +02:00
Vishnu Priya VR
9ce059dd06
Limiting noun_chunks for specific languages (#5396)
* Limiting noun_chunks for specific langauges

* Limiting noun_chunks for specific languages

Contributor Agreement

* Addressing review comments

* Removed unused fixtures and imports

* Add fa_tokenizer in test suite

* Use fa_tokenizer in test

* Undo extraneous reformatting

Co-authored-by: adrianeboyd <adrianeboyd@gmail.com>
2020-05-14 12:58:06 +02:00
Sofie Van Landeghem
b04738903e
prevent None in gold fields (#5425)
* set gold fields to empty list instead of keeping them as None

* add unit test
2020-05-13 22:08:50 +02:00
adrianeboyd
113e7981d0
Check that row is within bounds when adding vector (#5430)
Check that row is within bounds for the vector data array when adding a
vector.

Don't add vectors with rank OOV_RANK in `init-model` (change is due to
shift from OOV as 0 to OOV as OOV_RANK).
2020-05-13 22:08:28 +02:00
adrianeboyd
c963e269ba
Add method to update / reset pkuseg user dict (#5404) 2020-05-08 11:21:46 +02:00
Samuel Rodríguez Medina
5e55bfa821
Fixed tests for Swedish that were written in Danish. (#5395) 2020-05-05 14:06:27 +02:00
Adriane Boyd
565e0eef73 Add tokenizer option for token match with affixes
To fix the slow tokenizer URL (#4374) and allow `token_match` to take
priority over prefixes and suffixes by default, introduce a new
tokenizer option for a token match pattern that's applied after prefixes
and suffixes but before infixes.
2020-05-05 10:35:33 +02:00
Adriane Boyd
792c8af8cf Merge remote-tracking branch 'upstream/master' into bugfix/revert-token-match 2020-05-05 09:25:57 +02:00
Samuel Rodríguez Medina
148b036e0c
Spanish like num improvement (#5381)
* Add tests for Spanish like_num.

* Add missing numbers in Spanish lexical attributes for like_num.

* Modify Spanish test function name.

* Add contributor agreement.
2020-04-30 11:13:23 +02:00
Samuel Rodríguez Medina
8602daba85
Swedish like_num (#5371)
* Sign contributor agreement.

* Add like_num functionality to Swedish.

* Update spacy/tests/lang/sv/test_lex_attrs.py

Co-Authored-By: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update contributor agreement

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2020-04-29 21:25:22 +02:00
Sofie Van Landeghem
cfdaf99b80
Fix passing of component configuration (#5374)
* add kwargs to to_disk methods in docs - otherwise crashes on 'exclude' argument

* add fix and test for Issue 5137
2020-04-29 12:56:17 +02:00
Ines Montani
efec28ce70
Merge pull request #5367 from adrianeboyd/feature/simplify-warnings-v2 2020-04-29 12:55:37 +02:00
Sofie Van Landeghem
f67343295d
Update NEL examples and documentation (#5370)
* simplify creation of KB by skipping dim reduction

* small fixes to train EL example script

* add KB creation and NEL training example scripts to example section

* update descriptions of example scripts in the documentation

* moving wiki_entity_linking folder from bin to projects

* remove test for wiki NEL functionality that is being moved
2020-04-29 12:53:53 +02:00
adrianeboyd
a6e521cd79
Add is_sent_end token property (#5375)
Reconstruction of the original PR #4697 by @MiniLau.

Removes unused `SENT_END` symbol and `IS_SENT_END` from `Matcher` schema
because the Matcher is only going to be able to support `IS_SENT_START`.
2020-04-29 12:53:16 +02:00
Adriane Boyd
bc39f97e11 Simplify warnings 2020-04-28 13:37:37 +02:00
adrianeboyd
f8ac5b9f56
bugfix in span similarity (#5155) (#5358)
* bugfix in span similarity

* also rewrite doc.pyx for clarity

* formatting

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2020-04-27 16:51:27 +02:00
Sofie Van Landeghem
9203d821ae
Add 2 ini files in tests/lang (#5359) 2020-04-27 13:01:54 +02:00
Punitvara
b2b7e1f37a
This PR adds Gujarati Language class along with (#5355)
* This PR adds Gujarati Language class along with
- stop words

* Add test for gu tokenizer
2020-04-27 11:07:37 +02:00
sabiqueqb
fc91660aa2
Gh 5339 language class for malayalam (#5342)
* Initialize Malayalam Language class

* Add lex_attrs and examples for Malayalam

* Add spaCy Contributor Agreement

* Add test for ml tokenizer
2020-04-27 09:45:08 +02:00
adrianeboyd
84e06f9fb7
Improve GoldParse NER alignment (#5335)
Improve GoldParse NER alignment by including all cases where the start
and end of the NER span can be aligned, regardless of internal
tokenization differences.

To do this, convert BILUO tags to character offsets, check start/end
alignment with `doc.char_span()`, and assign the BILUO tags for the
aligned spans. Alignment for `O/-` tags is handled through the
one-to-one and multi alignments.
2020-04-23 16:58:23 +02:00
adrianeboyd
521f361052
Switch to new gold.align method (#5334)
* Switch from original `_align` to new simpler alignment algorithm from
  #4526

* Remove alignment normalizations beyond whitespace and lowercasing
2020-04-21 19:31:03 +02:00
adrianeboyd
f7471abd82
Add pkuseg and serialization support for Chinese (#5308)
* Add pkuseg and serialization support for Chinese

Add support for pkuseg alongside jieba

* Specify model through `Language` meta:

  * split on characters (if no word segmentation packages are installed)

```
Chinese(meta={"tokenizer": {"config": {"use_jieba": False, "use_pkuseg": False}}})
```

  * jieba (remains the default tokenizer if installed)

```
Chinese()
Chinese(meta={"tokenizer": {"config": {"use_jieba": True}}}) # explicit
```

  * pkuseg

```
Chinese(meta={"tokenizer": {"config": {"pkuseg_model": "default", "use_jieba": False, "use_pkuseg": True}}})
```

* The new tokenizer setting `require_pkuseg` is used to override
`use_jieba` default, which is intended for models that provide a pkuseg
model:

```
nlp_pkuseg = Chinese(meta={"tokenizer": {"config": {"pkuseg_model": "default", "require_pkuseg": True}}})
nlp = Chinese() # has `use_jieba` as `True` by default
nlp.from_bytes(nlp_pkuseg.to_bytes()) # `require_pkuseg` overrides `use_jieba` when calling the tokenizer
```

Add support for serialization of tokenizer settings and pkuseg model, if
loaded

* Add sorting for `Language.to_bytes()` serialization of `Language.meta`
so that the (emptied, but still present) tokenizer metadata is in a
consistent position in the serialized data

Extend tests to cover all three tokenizer configurations and
serialization

* Fix from_disk and tests without jieba or pkuseg

* Load cfg first and only show error if `use_pkuseg`
* Fix blank/default initialization in serialization tests

* Explicitly initialize jieba's cache on init

* Add serialization for pkuseg pre/postprocessors

* Reformat pkuseg install message
2020-04-18 17:01:53 +02:00
Jakob Jul Elben
663333c3b2
Fixes #5413 (#5315)
* Fix 5314

* Add contributor

* Resolve requested changes

Co-authored-by: Jakob Jul Elben <jakob@datamaga.com>
2020-04-16 13:29:02 +02:00
Paolo Arduin
1ca32d8f9c
Matcher support for Span as well as Doc (#5113)
* Matcher support for Span, as well as Doc #5056

* Removes an import unused

* Signed contributors agreement

* Code optimization and better test

* Add error message for bad Matcher call argument

* Fix merging
2020-04-15 13:51:33 +02:00
adrianeboyd
98c59027ed
Use max(uint64) for OOV lexeme rank (#5303)
* Use max(uint64) for OOV lexeme rank

* Add test for default OOV rank

* Revert back to thinc==7.4.0

Requiring the updated version of thinc was unnecessary.

* Define OOV_RANK in one place

Define OOV_RANK in one place in `util`.

* Fix formatting [ci skip]

* Switch to external definitions of max(uint64)

Switch to external defintions of max(uint64) and confirm that they are
equal.
2020-04-15 13:49:47 +02:00
adrianeboyd
3d2c308906
Add Doc init from list of words and text (#5251)
* Add Doc init from list of words and text

Add an option to initialize a `Doc` from a text and list of words where
the words may or may not include all whitespace tokens. If the text and
words are mismatched, raise an error.

* Fix error code

* Remove all whitespace before aligning words/text

* Move words/text init to util function

* Update error message

* Rename to get_words_and_spaces

* Fix formatting
2020-04-14 19:15:52 +02:00
Paolo Arduin
8ce408d2e1
Comparison predicate handling for != (#5282)
* Fix #5281

* Optim test
2020-04-14 19:14:15 +02:00
Leander Fiedler
d60e2d3ebf issue5230 added unit test for dumping and loading knowledgebase 2020-04-12 09:08:41 +02:00
Leander Fiedler
d2bb649227 issue5230 filter warnings in addition to filterwarnings to prevent deprecation warnings in python35(win) setup to pop up 2020-04-10 23:21:13 +02:00
Leander Fiedler
ca2a7a44db issue5230 store string values of warnings to remotely debug failing python35(win) setup 2020-04-10 22:26:55 +02:00
Leander Fiedler
88ca40a15d issue5230 raise warnings as errors to remotely debug failing python35(win) setup 2020-04-10 21:45:53 +02:00
Leander Fiedler
a7bdfe42e1 issue5230 added print statement to warnings filter to remotely debug failing python35(win) setup 2020-04-10 21:14:33 +02:00
Leander Fiedler
8c1d0d628f issue5230 writer now checks instance of loc parameter before trying to operate on it 2020-04-10 20:35:52 +02:00
adrianeboyd
cf579a398d
Add __init__.py to eu and hy tests (#5278) 2020-04-08 20:03:06 +02:00
lfiedler
e1e25c7e30 issue5230: added unittest test case for completion 2020-04-06 21:36:02 +02:00
Leander Fiedler
cde96f6c64 issue5230: optimized unit test a bit 2020-04-06 20:51:12 +02:00
Leander Fiedler
71cc903d65 issue5230: replaced open statements on path objects so that serialization still works an files are closed 2020-04-06 20:30:41 +02:00
Leander Fiedler
273ed452bb issue5230: added unicode declaration at top of the file 2020-04-06 19:22:32 +02:00
Leander Fiedler
1cd975d4a5 issue5230: fixed resource warnings in language 2020-04-06 18:54:32 +02:00
Leander Fiedler
493c77462a issue5230: test cases
covering known sources of resource warnings
2020-04-06 18:46:51 +02:00
Sofie Van Landeghem
b2e93be867
Optimizer defaults (#5244)
* set optimizer defaults to mimic thinc 7 + bump to dev6

* larger error range for senter overfitting test
2020-04-03 13:02:46 +02:00
YohannesDatasci
beef184e53
Armenian language support (#5246)
* add Armenian language and test cases

* agreement submission
2020-04-03 13:02:18 +02:00
adrianeboyd
b71a11ff6d
Update morphologizer (#5108)
* Add pos and morph scoring to Scorer

Add pos, morph, and morph_per_type to `Scorer`. Report pos and morph
accuracy in `spacy evaluate`.

* Update morphologizer for v3

* switch to tagger-based morphologizer
* use `spacy.HashCharEmbedCNN` for morphologizer defaults
* add `Doc.is_morphed` flag

* Add morphologizer to train CLI

* Add basic morphologizer pipeline tests

* Add simple morphologizer training example

* Remove subword_features from CharEmbed models

Remove `subword_features` argument from `spacy.HashCharEmbedCNN.v1` and
`spacy.HashCharEmbedBiLSTM.v1` since in these cases `subword_features`
is always `False`.

* Rename setting in morphologizer example

Use `with_pos_tags` instead of `without_pos_tags`.

* Fix kwargs for spacy.HashCharEmbedBiLSTM.v1

* Remove defaults for spacy.HashCharEmbedBiLSTM.v1

Remove default `nM/nC` for `spacy.HashCharEmbedBiLSTM.v1`.

* Set random seed for textcat overfitting test
2020-04-02 14:46:32 +02:00
Sofie Van Landeghem
311133e579
Train textcat with config (#5143)
* bring back default build_text_classifier method

* remove _set_dims_ hack in favor of proper dim inference

* add tok2vec initialize to unit test

* small fixes

* add unit test for various textcat config settings

* logistic output layer does not have nO

* fix window_size setting

* proper fix

* fix W initialization

* Update textcat training example

* Use ml_datasets
* Convert training data to `Example` format
* Use `n_texts` to set proportionate dev size

* fix _init renaming on latest thinc

* avoid setting a non-existing dim

* update to thinc==8.0.0a2

* add BOW and CNN defaults for easy testing

* various experiments with train_textcat script, fix softmax activation in textcat bow

* allow textcat train script to work on other datasets as well

* have dataset as a parameter

* train textcat from config, with example config

* add config for training textcat

* formatting

* fix exclusive_classes

* fixing BOW for GPU

* bump thinc to 8.0.0a3 (not published yet so CI will fail)

* add in link_vectors_to_models which got deleted

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2020-03-29 19:40:36 +02:00
adrianeboyd
ce0e538068
Check whether doc is instantiated in Example.get_gold_parses() (#5167)
* Check whether doc is instantiated

When creating docs to pair with gold parses, modify test to check
whether a doc is unset rather than whether it contains tokens.

* Restore test of evaluate on an empty doc

* Set a minimal gold.orig for the scorer

Without a minimal gold.orig the scorer can't evaluate empty docs. This
is the v3 equivalent of #4925.
2020-03-29 13:57:00 +02:00
Sofie Van Landeghem
d6d95674c1
bugfix in span similarity (#5155)
* bugfix in span similarity

* also rewrite doc.pyx for clarity

* formatting
2020-03-29 13:56:07 +02:00
adrianeboyd
963bd890c1
Modify Vector.resize to work with cupy and improve resizing (#5216)
* Modify Vector.resize to work with cupy

Modify `Vectors.resize` to work with cupy. Modify behavior when resizing
to a different vector dimension so that individual vectors are truncated
or extended with zeros instead of having the original values filled into
the new shape without regard for the original axes.

* Update spacy/tests/vocab_vectors/test_vectors.py

Co-Authored-By: Matthew Honnibal <honnibal+gh@gmail.com>

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-03-29 13:51:20 +02:00
Sofie Van Landeghem
9b412516e7
Fixing pickling of the parser (#5218)
* fix __reduce__ for pickling parser

* setting the move object as 'state' during pickling

* unskip test_issue4725 - works again
2020-03-27 19:35:26 +01:00
Ines Montani
92b9b631ef xfail -> skip 2020-03-27 10:51:32 +01:00
Ines Montani
ee4bb0e3b6 Fix import 2020-03-26 21:44:18 +01:00
Ines Montani
4fe2299586 xfail hanging test 2020-03-26 20:58:13 +01:00
Ines Montani
f12a46472c Remove unicode declarations 2020-03-26 15:18:32 +01:00
Ines Montani
46568f40a7 Merge branch 'master' into tmp/sync 2020-03-26 13:38:14 +01:00
Ines Montani
828acffc12 Tidy up and auto-format 2020-03-25 12:28:12 +01:00
adrianeboyd
86c43e55fa
Improve Lithuanian tokenization (#5205)
* Improve Lithuanian tokenization

Modify Lithuanian tokenization to improve performance for
UD_Lithuanian-ALKSNIS.

* Update Lithuanian tokenizer tests
2020-03-25 11:28:12 +01:00
Adriane Boyd
09d442f5ad Merge remote-tracking branch 'upstream/master' into feature/ud-tokenization-da 2020-03-25 09:41:52 +01:00
Adriane Boyd
cba2d1d972 Disable failing abbreviation test
UD_Danish-DDT has (as far as I can tell) hallucinated periods after
abbreviations, so the changes are an artifact of the corpus and not due
to anything meaningful about Danish tokenization.
2020-03-25 09:39:26 +01:00
svlandeg
59000ee21d fix serialization of empty doc + unit test 2020-03-13 16:07:56 +01:00
Adriane Boyd
423849f94a Fix sents comparison in test util
Due to changes to `Span` (#5005), spans from different documents are now
never equal. Check `Token.is_sent_start` values instead.
2020-03-13 09:25:23 +01:00
Adriane Boyd
1139247532 Revert changes to token_match priority from #4374
* Revert changes to priority of `token_match` so that it has priority
over all other tokenizer patterns

* Add lookahead and potentially slow lookbehind back to the default URL
pattern

* Expand character classes in URL pattern to improve matching around
lookaheads and lookbehinds related to #4882

* Revert changes to Hungarian tokenizer

* Revert (xfail) several URL tests to their status before #4374

* Update `tokenizer.explain()` and docs accordingly
2020-03-09 12:09:41 +01:00
Sofie Van Landeghem
5847be6022
Tok2Vec: extract-embed-encode (#5102)
* avoid changing original config

* fix elif structure, batch with just int crashes otherwise

* tok2vec example with doc2feats, encode and embed architectures

* further clean up MultiHashEmbed

* further generalize Tok2Vec to work with extract-embed-encode parts

* avoid initializing the charembed layer with Docs (for now ?)

* small fixes for bilstm config (still does not run)

* rename to core layer

* move new configs

* walk model to set nI instead of using core ref

* fix senter overfitting test to be more similar to the training data (avoid flakey behaviour)
2020-03-08 13:23:18 +01:00
Sofie Van Landeghem
1a2b8fc264
set vector of merged entity (#5085)
* merge_entities sets the vector in the vocab for the merged token

* add unit test

* import unicode_literals

* move code to _merge function

* only set vector if vocab has non-zero vectors
2020-03-06 14:45:28 +01:00
adrianeboyd
c95ce96c44
Update sentence recognizer (#5109)
* Update sentence recognizer

* rename `sentrec` to `senter`
* use `spacy.HashEmbedCNN.v1` by default
* update to follow `Tagger` modifications
* remove component methods that can be inherited from `Tagger`
* add simple initialization and overfitting pipeline tests

* Update serialization test for senter
2020-03-06 14:45:02 +01:00
Sofie Van Landeghem
6ac9fc0619
Unit test for NEL functionality (#5114)
* empty begin_training for sentencizer

* overfitting unit test for entity linker

* fixed NEL IO by storing the entity_vector_length in the cfg
2020-03-06 14:42:23 +01:00
Muhammad Irfan
03376c9d9b Basque language added and tested. 2020-03-04 11:58:56 +05:00
adrianeboyd
9be90dbca3
Improve token head verification (#5079)
* Improve token head verification

Improve the verification for valid token heads when heads are set:

* in `Token.head`: heads come from the same document
* in `Doc.from_array()`: head indices are within the bounds of the
document

* Improve error message
2020-03-03 21:44:51 +01:00
Sofie Van Landeghem
d307e9ca58
take care of global vectors in multiprocessing (#5081)
* restore load_nlp.VECTORS in the child process

* add unit test

* fix test

* remove unnecessary import

* add utf8 encoding

* import unicode_literals
2020-03-03 13:58:22 +01:00
adrianeboyd
697bec764d
Normalize IS_SENT_START to SENT_START for Matcher (#5080) 2020-03-03 12:22:39 +01:00
adrianeboyd
2281c4708c
Restore empty tokenizer properties (#5026)
* Restore empty tokenizer properties

* Check for types in tokenizer.from_bytes()

* Add test for setting empty tokenizer rules
2020-03-02 11:55:02 +01:00
Sofie Van Landeghem
c6b12ab02a
Bugfix/get doc (#5049)
* new (broken) unit test

* fixing get_doc method
2020-03-02 11:49:28 +01:00
Ines Montani
37691e6d5d Simplify warnings 2020-02-28 12:20:23 +01:00
Ines Montani
5da3ad682a Tidy up and auto-format 2020-02-28 11:57:41 +01:00
Sofie Van Landeghem
06f0a8daa0
Default settings to configurations (#4995)
* fix grad_clip naming

* cleaning up pretrained_vectors out of cfg

* further refactoring Model init's

* move Model building out of pipes

* further refactor to require a model config when creating a pipe

* small fixes

* making cfg in nn_parser more consistent

* fixing nr_class for parser

* fixing nn_parser's nO

* fix printing of loss

* architectures in own file per type, consistent naming

* convenience methods default_tagger_config and default_tok2vec_config

* let create_pipe access default config if available for that component

* default_parser_config

* move defaults to separate folder

* allow reading nlp from package or dir with argument 'name'

* architecture spacy.VocabVectors.v1 to read static vectors from file

* cleanup

* default configs for nel, textcat, morphologizer, tensorizer

* fix imports

* fixing unit tests

* fixes and clean up

* fixing defaults, nO, fix unit tests

* restore parser IO

* fix IO

* 'fix' serialization test

* add *.cfg to manifest

* fix example configs with additional arguments

* replace Morpohologizer with Tagger

* add IO bit when testing overfitting of tagger (currently failing)

* fix IO - don't initialize when reading from disk

* expand overfitting tests to also check IO goes OK

* remove dropout from HashEmbed to fix Tagger performance

* add defaults for sentrec

* update thinc

* always pass a Model instance to a Pipe

* fix piped_added statement

* remove obsolete W029

* remove obsolete errors

* restore byte checking tests (work again)

* clean up test

* further test cleanup

* convert from config to Model in create_pipe

* bring back error when component is not initialized

* cleanup

* remove calls for nlp2.begin_training

* use thinc.api in imports

* allow setting charembed's nM and nC

* fix for hardcoded nM/nC + unit test

* formatting fixes

* trigger build
2020-02-27 18:42:27 +01:00
Ines Montani
c1a5ece65f Tidy up setup and update requirements tests 2020-02-25 15:46:39 +01:00
Ines Montani
5d21d3e8b9 Merge branch 'develop' into pr/5008 2020-02-25 15:24:47 +01:00
Ines Montani
4440a072d2
Merge pull request #5006 from svlandeg/bugfix/multiproc-underscore
load Underscore state when multiprocessing
2020-02-25 14:46:02 +01:00
svlandeg
d821c95eb0 debugging prints 2020-02-23 17:38:33 +01:00
svlandeg
58568bd0cd fix 2020-02-23 16:45:37 +01:00
svlandeg
0f55e51704 assert we found the root_dir 2020-02-23 16:33:58 +01:00
svlandeg
783da088ea avoid try except 2020-02-23 16:21:21 +01:00
svlandeg
b49a3afd0c use clean_underscore fixture 2020-02-23 15:49:20 +01:00
Tom Keefe
ddf63b97a8
make idx available via to_array (#5030) 2020-02-22 14:13:06 +01:00
Sofie Van Landeghem
44f4142ce4
add two abbreviations and some additional unit tests (#5040) 2020-02-22 14:12:32 +01:00
Sofie Van Landeghem
479bd8d09f
add lemma option to displacy 'dep' visualiser (#5041)
* add lemma option to displacy 'dep' visualiser

* more compact list comprehension

* add option to doc

* fix test and add lemmas to util.get_doc

* fix capital

* remove lemma from get_doc

* cleanup
2020-02-22 14:11:51 +01:00
svlandeg
9f1447bf71 where areth thou, file ? 2020-02-19 17:09:29 +02:00
svlandeg
9834527f2c hack to switch between CLI folder setup and local setup 2020-02-19 16:22:48 +02:00
svlandeg
5c2f645470 root dir one level up 2020-02-19 16:15:56 +02:00
svlandeg
b20351792a assert prints for more clarity 2020-02-19 15:51:53 +02:00
Ines Montani
a3335d36b8 Merge branch 'develop' into refactor/remove-symlinks 2020-02-18 17:22:20 +01:00
Ines Montani
09cbeaef27 Remove symlinks, data dir and related stuff 2020-02-18 17:20:17 +01:00
Ines Montani
e3f40a6a0f Tidy up and auto-format 2020-02-18 15:38:18 +01:00
Ines Montani
1278161f47 Tidy up and fix issues 2020-02-18 15:17:03 +01:00
Ines Montani
de11ea753a Merge branch 'master' into develop 2020-02-18 14:47:23 +01:00
adrianeboyd
3b22eb651b
Sync Span __eq__ and __hash__ (#5005)
* Sync Span __eq__ and __hash__

Use the same tuple for `__eq__` and `__hash__`, including all attributes
except `vector` and `vector_norm`.

* Update entity comparison in tests

Update `assert_docs_equal()` test util to compare `Span` properties for
ents rather than `Span` objects.
2020-02-16 17:20:36 +01:00
adrianeboyd
5b102963bf
Require HEAD for is_parsed in Doc.from_array() (#5011)
Modify flag settings so that `DEP` is not sufficient to set `is_parsed`
and only run `set_children_from_heads()` if `HEAD` is provided.

Then the combination `[SENT_START, DEP]` will set deps and not clobber
sent starts with a lot of one-word sentences.
2020-02-16 17:17:09 +01:00
svlandeg
2729d9164d cleanup 2020-02-12 22:59:37 +01:00
svlandeg
6bbd816569 formatting 2020-02-12 22:50:27 +01:00
svlandeg
34986c7bfd test versions of required libs across different places 2020-02-12 22:49:50 +01:00
svlandeg
6e717c62ed avoid the tests interacting with eachother through the global Underscore variable 2020-02-12 13:21:31 +01:00
svlandeg
7939c63886 use English instead of model 2020-02-12 12:26:27 +01:00
svlandeg
46628d8890 add some asserts 2020-02-12 12:12:52 +01:00
svlandeg
51d37033c8 remove old comment 2020-02-12 12:10:05 +01:00
svlandeg
05dedaa2cf add unit test 2020-02-12 12:00:13 +01:00
Antti Ajanki
e1f777b151
Improvements for Finnish tokenizer (#4985)
* don't split on a colon. Colon is used to attach suffixes for abbreviations
* tokenize on any of LIST_HYPHENS (except a single hyphen), not just on --
* simplify infix rules by merging similar rules
2020-02-10 20:32:43 -05:00
Tyler Couto
9fa9d7f2cb
Fix for Issue 4665 - conllu2json (#4953)
* Fix for Issue 4665 - conllu2json

- Allowing HEAD to be an underscore

* Added contributor agreement
2020-02-03 13:01:48 +01:00
adrianeboyd
5ee9d8c9b8
Add MORPH attr, add support in retokenizer (#4947)
* Add MORPH attr / symbol for token attrs

* Update retokenizer for MORPH
2020-01-29 17:45:46 +01:00
adrianeboyd
a365359b36
Add convert CLI option to merge CoNLL-U subtokens (#4722)
* Add convert CLI option to merge CoNLL-U subtokens

Add `-T` option to convert CLI that merges CoNLL-U subtokens into one
token in the converted data. Each CoNLL-U sentence is read into a `Doc`
and the `Retokenizer` is used to merge subtokens with features as
follows:

* `orth` is the merged token orth (should correspond to raw text and `#
text`)

* `tag` is all subtoken tags concatenated with `_`, e.g. `ADP_DET`

* `pos` is the POS of the syntactic root of the span (as determined by
the Retokenizer)

* `morph` is all morphological features merged

* `lemma` is all subtoken lemmas concatenated with ` `, e.g. `de o`

* with `-m` all morphological features are combined with the tag using
the separator `__`, e.g.
`ADP_DET__Definite=Def|Gender=Masc|Number=Sing|PronType=Art`

* `dep` is the dependency relation for the syntactic root of the span
(as determined by the Retokenizer)

Concatenated tags will be mapped to the UD POS of the syntactic root
(e.g., `ADP`) and the morphological features will be the combined
features.

In many cases, the original UD subtokens can be reconstructed from the
available features given a language-specific lookup table, e.g.,
Portuguese `do / ADP_DET /
Definite=Def|Gender=Masc|Number=Sing|PronType=Art` is `de / ADP`, `o /
DET / Definite=Def|Gender=Masc|Number=Sing|PronType=Art` or lookup rules
for forms containing open class words like Spanish `hablarlo / VERB_PRON
/
Case=Acc|Gender=Masc|Number=Sing|Person=3|PrepCase=Npr|PronType=Prs|VerbForm=Inf`.

* Clean up imports
2020-01-29 17:44:25 +01:00