Commit Graph

7432 Commits

Author SHA1 Message Date
Adriane Boyd
e962784531
Add Lemmatizer and simplify related components (#5848)
* Add Lemmatizer and simplify related components

* Add `Lemmatizer` pipe with `lookup` and `rule` modes using the
`Lookups` tables.
* Reduce `Tagger` to a simple tagger that sets `Token.tag` (no pos or lemma)
* Reduce `Morphology` to only keep track of morph tags (no tag map, lemmatizer,
or morph rules)
* Remove lemmatizer from `Vocab`
* Adjust many many tests

Differences:

* No default lookup lemmas
* No special treatment of TAG in `from_array` and similar required
* Easier to modify labels in a `Tagger`
* No extra strings added from morphology / tag map

* Fix test

* Initial fix for Lemmatizer config/serialization

* Adjust init test to be more generic

* Adjust init test to force empty Lookups

* Add simple cache to rule-based lemmatizer

* Convert language-specific lemmatizers

Convert language-specific lemmatizers to component lemmatizers. Remove
previous lemmatizer class.

* Fix French and Polish lemmatizers

* Remove outdated UPOS conversions

* Update Russian lemmatizer init in tests

* Add minimal init/run tests for custom lemmatizers

* Add option to overwrite existing lemmas

* Update mode setting, lookup loading, and caching

* Make `mode` an immutable property
* Only enforce strict `load_lookups` for known supported modes
* Move caching into individual `_lemmatize` methods

* Implement strict when lang is not found in lookups

* Fix tables/lookups in make_lemmatizer

* Reallow provided lookups and allow for stricter checks

* Add lookups asset to all Lemmatizer pipe tests

* Rename lookups in lemmatizer init test

* Clean up merge

* Refactor lookup table loading

* Add helper from `load_lemmatizer_lookups` that loads required and
optional lookups tables based on settings provided by a config.

Additional slight refactor of lookups:

* Add `Lookups.set_table` to set a table from a provided `Table`
* Reorder class definitions to be able to specify type as `Table`

* Move registry assets into test methods

* Refactor lookups tables config

Use class methods within `Lemmatizer` to provide the config for
particular modes and to load the lookups from a config.

* Add pipe and score to lemmatizer

* Simplify Tagger.score

* Add missing import

* Clean up imports and auto-format

* Remove unused kwarg

* Tidy up and auto-format

* Update docstrings for Lemmatizer

Update docstrings for Lemmatizer.

Additionally modify `is_base_form` API to take `Token` instead of
individual features.

* Update docstrings

* Remove tag map values from Tagger.add_label

* Update API docs

* Fix relative link in Lemmatizer API docs
2020-08-07 15:27:13 +02:00
Ines Montani
1d01d89b79 Update CLI docs and evaluate command [ci skip] 2020-08-07 14:40:58 +02:00
Ines Montani
ef2c67cca5
Add DocBin to/from_disk methods and update docs (#5892)
* Add DocBin to/from_disk methods and update docs

* Use DocBin.from_disk in Corpus
2020-08-07 14:30:59 +02:00
Ines Montani
4ca08c6d5d
Merge pull request #5891 from adrianeboyd/docs/attribute-ruler-api
Add AttributeRuler API docs
2020-08-07 13:55:12 +02:00
Adriane Boyd
b8d0c23857 Add AttributeRuler API docs
With additional minor updates to AttributeRuler docstrings.
2020-08-07 12:43:23 +02:00
svlandeg
b17db0e994 Merge remote-tracking branch 'upstream/develop' into feature/el-docs
# Conflicts:
#	website/docs/usage/training.md
2020-08-06 19:48:52 +02:00
Adriane Boyd
06c3a5e048
Add pipe to AttributeRuler (#5889) 2020-08-06 19:43:09 +02:00
Ines Montani
9b7f198390 Fix format 2020-08-06 19:30:53 +02:00
Ines Montani
3c4389110d Remove unused imports 2020-08-06 19:30:47 +02:00
Matthew Honnibal
d4525816ef
Be less choosy about reporting textcat scores (#5879)
* Set textcat scores more consistently

* Refactor textcat scores

* Fixes to scorer

* Add comments

* Add threshold

* Rename just 'f' to micro_f in textcat scorer

* Fix textcat score for two-class

* Fix syntax

* Fix textcat score

* Fix docstring
2020-08-06 16:24:13 +02:00
svlandeg
0b4d1e1bc4 'debug data' instead of 'debug-data' 2020-08-06 15:47:31 +02:00
svlandeg
881e3f8fd0 add docbin explanation and example 2020-08-06 15:29:44 +02:00
Adriane Boyd
5e683a6e46
Fix return values for per feat score (#5885)
* Fix return values for per feat score

Convert `PRFScore` to dict as other per type scores.

* Update tests accordingly
2020-08-06 15:14:47 +02:00
Ines Montani
913d21f0a3
Merge pull request #5882 from explosion/feature/raise-from
Use "raise ... from" in custom errors for better tracebacks
2020-08-06 00:35:26 +02:00
Ines Montani
06e80d95cd
Sync develop with nightly docs state (#5883)
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2020-08-06 00:28:14 +02:00
Ines Montani
d92954ac1d
Merge pull request #5881 from explosion/feature/better-error-model-shortcuts 2020-08-06 00:13:35 +02:00
Ines Montani
56c17973aa Use "raise ... from" in custom errors for better tracebacks 2020-08-05 23:53:21 +02:00
Ines Montani
5cc0d89fad
Simplify config overrides in CLI and deserialization (#5880) 2020-08-05 23:35:09 +02:00
Ines Montani
0881455a5d Update error message 2020-08-05 23:15:05 +02:00
Ines Montani
2a1fa86a0d Add better error for failed model shortcut loading 2020-08-05 23:10:29 +02:00
Ines Montani
c675746ca2 Update docstrings and types 2020-08-05 20:29:46 +02:00
Ines Montani
823e533dc1
Add config callbacks for modifying nlp object before and after init (#5866)
* WIP: Concept for modifying nlp object before and after init

* Make callbacks return nlp object

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>

* Raise if callbacks don't return correct type

* Rename, update types, add after_pipeline_creation

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-05 19:47:54 +02:00
Ines Montani
586d695775 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-08-05 16:01:11 +02:00
Ines Montani
e68459296d Tidy up and auto-format 2020-08-05 16:00:59 +02:00
Matthew Honnibal
50c0e49741 Fix train CLI 2020-08-05 15:40:47 +02:00
Matthew Honnibal
b9df4d6116 Fix textcat.begin_training if vectors set 2020-08-05 15:40:36 +02:00
Adriane Boyd
af125875cf
Update SimpleNER (#5878)
* Fix `get_loss` to use NER annotation
* Add labels as part of cfg
* Add simple overfitting test
2020-08-05 14:43:29 +02:00
Sofie Van Landeghem
b88c5c701a
Bugfix in nlp.replace_pipe (#5875)
* bugfix and unit test

* merge two conditions
2020-08-05 09:30:58 +02:00
Ines Montani
b795f02fbd
Allow adding pipeline components from source model (#5857)
* Allow adding pipeline components from source model

* Config: name -> component

* Improve error messages

* Fix error and test

* Add frozen components and exclude logic

* Remove exclude from Language.evaluate

* Init sourced components with current vocab

* Fix error codes
2020-08-04 23:39:19 +02:00
Sofie Van Landeghem
34873c4911
Example Dict format consistency (#5858)
* consistently use upper-case IDS in token_annotation format and for get_aligned

* remove ID from to_dict (not used in from_dict either)

* fix test

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-04 22:22:26 +02:00
Adriane Boyd
fa79a0db9f
Add AttributeRuler for token attribute exceptions (#5842)
* Add AttributeRuler for token attribute exceptions

Add the `AttributeRuler` to handle exceptions for token-level
attributes. The `AttributeRuler` uses `Matcher` patterns to identify
target spans and applies the specified attributes to the token at the
provided index in the matched span. A negative index can be used to
index from the end of the matched span. The retokenizer is used to
"merge" the individual tokens and assign them the provided attributes.

Helper functions can import existing tag maps and morph rules to the
corresponding `Matcher` patterns.

There is an additional minor bug fix for `MORPH` attributes in the
retokenizer to correctly normalize the values and to handle `MORPH`
alongside `_` in an attrs dict.

* Fix default name

* Update name in error message

* Extend AttributeRuler functionality

* Add option to initialize with a dict of AttributeRuler patterns

* Instead of silently discarding overlapping matches (the default
behavior for the retokenizer if only the attrs differ), split the
matches into disjoint sets and retokenize each set separately. This
allows, for instance, one pattern to set the POS and another pattern to
set the lemma. (If two matches modify the same attribute, it looks like
the attrs are applied in the order they were added, but it may not be
deterministic?)

* Improve types

* Sort spans before processing

* Fix index boundaries in Span

* Refactor retokenizer to separate attrs methods

Add top-level `normalize_token_attrs` and `set_token_attrs` methods.

* Update AttributeRuler to use refactored methods

Update `AttributeRuler` to replace use of full retokenizer with only the
relevant methods for normalizing and setting attributes for a single
token.

* Update spacy/pipeline/attributeruler.py

Co-authored-by: Ines Montani <ines@ines.io>

* Make API more similar to EntityRuler

* Add `AttributeRuler.add_patterns` to add patterns from a list of dicts
* Return list of dicts as property `AttributeRuler.patterns`

* Make attrs_unnormed private

* Add test loading patterns from assets

* Revert "Fix index boundaries in Span"

This reverts commit 8f8a5c3386.

* Add Span index boundary checks (#5861)

* Add Span index boundary checks

* Return Span-specific IndexError in all cases

* Simplify and fix if/else

Co-authored-by: Ines Montani <ines@ines.io>
2020-08-04 17:02:39 +02:00
Sofie Van Landeghem
492d1ec5de
Prevent alignment when texts don't match (#5867)
* remove empty gold.pyx

* add alignment unit test (to be used in docs)

* ensure that Alignment is only used on equal texts

* additional test using example.alignment

* formatting

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-04 16:29:18 +02:00
Matthew Honnibal
ecb3c4e8f4
Create corpus iterator and batcher from registry during training (#5865)
* Move batchers into their own module (and registry)

* Update CLI

* Update Corpus and batcher

* Update tests

* Update one config

* Merge 'evaluation' block back under [training]

* Import batchers in gold __init__

* Fix batchers

* Update config

* Update schema

* Update util

* Don't assume train and dev are actually paths

* Update onto-joint config

* Fix missing import

* Format

* Format

* Update spacy/gold/corpus.py

Co-authored-by: Ines Montani <ines@ines.io>

* Fix name

* Update default config

* Fix get_length option in batchers

* Update test

* Add comment

* Pass path into Corpus

* Update docstring

* Update schema and configs

* Update config

* Fix test

* Fix paths

* Fix print

* Fix create_train_batches

* [training.read_train] -> [training.train_corpus]

* Update onto-joint config

Co-authored-by: Ines Montani <ines@ines.io>
2020-08-04 15:09:37 +02:00
Sofie Van Landeghem
82347110f5
Default empty KB in EL component (#5872)
* EL field documentation

* documentation consistent with docs

* default empty KB, initialize vocab separately

* formatting

* add test for changing the default entity vector length

* update comment
2020-08-04 14:34:09 +02:00
Adriane Boyd
b7e3018d97
Recalculate alignment if tokenization differs (#5868)
* Recalculate alignment if tokenization differs

* Refactor cached alignment data
2020-08-04 14:31:32 +02:00
Ines Montani
934447a611
Merge pull request #5855 from svlandeg/fix/cli-debug 2020-08-03 13:09:20 +02:00
Ines Montani
4c055f0aa7
Add init CLI and init config (#5854)
* Add init CLI and init config draft

* Improve config validation

* Auto-format

* Don't export anything in debug config

* Update docs
2020-08-02 15:18:30 +02:00
svlandeg
6f4e46ee93 Merge remote-tracking branch 'upstream/develop' into fix/cli-debug
# Conflicts:
#	pyproject.toml
#	requirements.txt
#	setup.cfg
2020-08-01 18:38:59 +02:00
Ines Montani
b40f44419b Simplify pipe analysis
- remove unused code
- don't print by default
- integrate attrs info into analysis output
2020-08-01 13:40:06 +02:00
Ines Montani
b68c53858c Remove global 2020-07-31 18:37:58 +02:00
Ines Montani
30a76fcf6f Integrate and simplify pipe analysis 2020-07-31 18:34:35 +02:00
svlandeg
9b719dfb1a use divider inbetween steps 2020-07-31 18:06:48 +02:00
svlandeg
51ffc4a166 rename pipe_name to component 2020-07-31 17:58:55 +02:00
svlandeg
878327d38e printing final predictions by default to False 2020-07-31 17:36:32 +02:00
Ines Montani
2d955fbf98 Fix linting [ci skip] 2020-07-31 17:05:28 +02:00
Ines Montani
e9e8fa2466 Update docs and types 2020-07-31 17:02:54 +02:00
svlandeg
cc2f58a1b0 use data_validation context manager 2020-07-31 16:49:42 +02:00
svlandeg
5fa3235d06 set DATA_VALIDATION to False for debug_model (upgrade thinc) 2020-07-31 15:21:01 +02:00
svlandeg
08d3c36c20 bugfix in train CLI 2020-07-31 15:03:43 +02:00
Adriane Boyd
9b509aa87f Move Language.evaluate scorer config to new arg
Move `Language.evaluate` scorer config from `component_cfg` to separate
argument `scorer_cfg`.
2020-07-31 11:05:16 +02:00