Updates from #5362 and fix from #5387:
* `train`:
* if training on GPU, only run evaluation/timing on CPU in the first
iteration
* if training is aborted, exit with a non-0 exit status
* Tidy up train-from-config a bit
* Fix accidentally quadratic perf in TokenAnnotation.brackets
When we're reading in the gold data, we had a nested loop where
we looped over the brackets for each token, looking for brackets
that start on that word. This is accidentally quadratic, because
we have one bracket per word (for the POS tags). So we had
an O(N**2) behaviour here that ended up being pretty slow.
To solve this I'm indexing the brackets by their starting word
on the TokenAnnotations object, and having a property to provide
the previous view.
* Fixes
* setting KB in the EL constructor, similar to how the model is passed on
* removing wikipedia example files - moved to projects
* throw an error when nlp.update is called with 2 positional arguments
* rewriting the config logic in create pipe to accomodate for other objects (e.g. KB) in the config
* update config files with new parameters
* avoid training pipeline components that don't have a model (like sentencizer)
* various small fixes + UX improvements
* small fixes
* set thinc to 8.0.0a9 everywhere
* remove outdated comment
* Fix most_similar for vectors with unused rows
Address issues related to the unused rows in the vector table and
`most_similar`:
* Update `most_similar()` to search only through rows that are in use
according to `key2row`.
* Raise an error when `most_similar(n=n)` is larger than the number of
vectors in the table.
* Set and restore `_unset` correctly when vectors are added or
deserialized so that new vectors are added in the correct row.
* Set data and keys to the same length in `Vocab.prune_vectors()` to
avoid spurious entries in `key2row`.
* Fix regression test using `most_similar`
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Add warning for misaligned character offset spans
* Resolve conflict
* Filter warnings in example scripts
Filter warnings in example scripts to show warnings once, in particular
warnings about misaligned entities.
Co-authored-by: Ines Montani <ines@ines.io>
Update Polish tokenizer for UD_Polish-PDB, which is a relatively major
change from the existing tokenizer. Unused exceptions files and
conflicting test cases removed.
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Reduce stored lexemes data, move feats to lookups
* Move non-derivable lexemes features (`norm / cluster / prob`) to
`spacy-lookups-data` as lookups
* Get/set `norm` in both lookups and `LexemeC`, serialize in lookups
* Remove `cluster` and `prob` from `LexemesC`, get/set/serialize in
lookups only
* Remove serialization of lexemes data as `vocab/lexemes.bin`
* Remove `SerializedLexemeC`
* Remove `Lexeme.to_bytes/from_bytes`
* Modify normalization exception loading:
* Always create `Vocab.lookups` table `lexeme_norm` for
normalization exceptions
* Load base exceptions from `lang.norm_exceptions`, but load
language-specific exceptions from lookups
* Set `lex_attr_getter[NORM]` including new lookups table in
`BaseDefaults.create_vocab()` and when deserializing `Vocab`
* Remove all cached lexemes when deserializing vocab to override
existing normalizations with the new normalizations (as a replacement
for the previous step that replaced all lexemes data with the
deserialized data)
* Skip English normalization test
Skip English normalization test because the data is now in
`spacy-lookups-data`.
* Remove norm exceptions
Moved to spacy-lookups-data.
* Move norm exceptions test to spacy-lookups-data
* Load extra lookups from spacy-lookups-data lazily
Load extra lookups (currently for cluster and prob) lazily from the
entry point `lg_extra` as `Vocab.lookups_extra`.
* Skip creating lexeme cache on load
To improve model loading times, do not create the full lexeme cache when
loading. The lexemes will be created on demand when processing.
* Identify numeric values in Lexeme.set_attrs()
With the removal of a special case for `PROB`, also identify `float` to
avoid trying to convert it with the `StringStore`.
* Skip lexeme cache init in from_bytes
* Unskip and update lookups tests for python3.6+
* Update vocab pickle to include lookups_extra
* Update vocab serialization tests
Check strings rather than lexemes since lexemes aren't initialized
automatically, account for addition of "_SP".
* Re-skip lookups test because of python3.5
* Skip PROB/float values in Lexeme.set_attrs
* Convert is_oov from lexeme flag to lex in vectors
Instead of storing `is_oov` as a lexeme flag, `is_oov` reports whether
the lexeme has a vector.
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* make disable_pipes deprecated in favour of the new toggle_pipes
* rewrite disable_pipes statements
* update documentation
* remove bin/wiki_entity_linking folder
* one more fix
* remove deprecated link to documentation
* few more doc fixes
* add note about name change to the docs
* restore original disable_pipes
* small fixes
* fix typo
* fix error number to W096
* rename to select_pipes
* also make changes to the documentation
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
