Commit Graph

781 Commits

Author SHA1 Message Date
Daniël de Kok
c621e251b8 Typing fixes 2024-01-24 12:20:01 +01:00
Daniël de Kok
81beaea70e Merge remote-tracking branch 'upstream/master' into maintenance/v4-merge-master-20240119 2024-01-19 12:34:29 +01:00
Sofie Van Landeghem
56fc3bc0f3
Type documentation fixes for Doc (#13187)
* correct char_span output type - can be None

* unify type of exclude parameter

* black

* further fixes to from_dict and to_dict

* formatting
2023-12-18 09:00:47 +01:00
Adriane Boyd
c096c5c0c9
Update for numpy 2.0 deprecations (#13103)
- Replace `np.trapz` with vendored `trapezoid` from scipy
- Replace `np.float_` with `np.float64`
2023-11-06 08:47:53 +01:00
Sofie Van Landeghem
699dd8b3b7
Update __all__ fields (#13063)
* update all for pipeline.init

* add all in training.init

* add all in kb.init

* alphabetically
2023-10-16 10:17:47 +02:00
Adriane Boyd
ea1befa8ff
Support Any comparisons for Token and Span (#13058)
* Support Any comparisons for Token and Span

* Preserve previous behavior for None
2023-10-12 11:53:33 +02:00
Adriane Boyd
538304948e Remove profile=True from currently profiled cython 2023-09-28 17:09:41 +02:00
Adriane Boyd
55614d6799 Add profile=False to currently unprofiled cython 2023-09-28 17:09:41 +02:00
Sofie Van Landeghem
0737443096
feat: add example stubs (3) (#12801)
* feat: add example stubs

* fix: add required annotations

* fix: mypy issues

* fix: use Py36-compatible Portocol

* Minor reformatting

* adding further type specifications and removing internal methods

* black formatting

* widen type to iterable

* add private methods that are being used by the built-in convertors

* revert changes to corpus.py

* fixes

* fixes

* fix typing of PlainTextCorpus

---------

Co-authored-by: Basile Dura <basile@bdura.me>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2023-08-02 08:15:12 +02:00
svlandeg
96f2e30c4b cython fixes and cleanup 2023-07-19 17:41:29 +02:00
svlandeg
47a82c6164 merge fixes 2023-07-19 16:38:29 +02:00
svlandeg
0e3b6a87d6 Merge branch 'upstream_master' into sync_v4 2023-07-19 16:37:31 +02:00
Basile Dura
b0228d8ea6
ci: add cython linter (#12694)
* chore: add cython-linter dev dependency

* fix: lexeme.pyx

* fix: morphology.pxd

* fix: tokenizer.pxd

* fix: vocab.pxd

* fix: morphology.pxd (line length)

* ci: add cython-lint

* ci: fix cython-lint call

* Fix kb/candidate.pyx.

* Fix kb/kb.pyx.

* Fix kb/kb_in_memory.pyx.

* Fix kb.

* Fix training/ partially.

* Fix training/. Ignore trailing whitespaces and too long lines.

* Fix ml/.

* Fix matcher/.

* Fix pipeline/.

* Fix tokens/.

* Fix build errors. Fix vocab.pyx.

* Fix cython-lint install and run.

* Fix lexeme.pyx, parts_of_speech.pxd, vectors.pyx. Temporarily disable cython-lint execution.

* Fix attrs.pyx, lexeme.pyx, symbols.pxd, isort issues.

* Make cython-lint install conditional. Fix tokenizer.pyx.

* Fix remaining files. Reenable cython-lint check.

* Readded parentheses.

* Fix test_build_dependencies().

* Add explanatory comment to cython-lint execution.

---------

Co-authored-by: Raphael Mitsch <r.mitsch@outlook.com>
2023-07-19 12:03:31 +02:00
svlandeg
d26e4e0849 Revert "feat: add example stubs (#12679)"
This reverts commit 30bb34533a.
2023-07-06 17:02:38 +02:00
Basile Dura
30bb34533a
feat: add example stubs (#12679)
* feat: add example stubs

* fix: add required annotations

* fix: mypy issues

* fix: use Py36-compatible Portocol

* Minor reformatting

---------

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: svlandeg <svlandeg@github.com>
2023-07-06 16:49:43 +02:00
Adriane Boyd
fb0da3e097
Support custom token/lexeme attribute for vectors (#12625)
* Support custom token/lexeme attribute for vectors

* Fix imports

* Back off to ORTH without Vectors.attr

* Fallback if vectors.attr doesn't exist

* Update docs
2023-06-28 09:43:14 +02:00
Daniël de Kok
122f3b32ad Fix span <-> underscore import cycle 2023-06-26 12:43:21 +02:00
Daniël de Kok
bf92ca4f10 Merge remote-tracking branch 'upstream/master' into v4-isort 2023-06-26 12:43:00 +02:00
Daniël de Kok
2468742cb8 isort all the things 2023-06-26 11:41:03 +02:00
Daniël de Kok
096794dd74 Account for differences between Span.sents in spaCy 3/4 2023-06-22 15:38:22 +02:00
Daniël de Kok
e2b70df012
Configure isort to use the Black profile, recursively isort the spacy module (#12721)
* Use isort with Black profile

* isort all the things

* Fix import cycles as a result of import sorting

* Add DOCBIN_ALL_ATTRS type definition

* Add isort to requirements

* Remove isort from build dependencies check

* Typo
2023-06-14 17:48:41 +02:00
Daniël de Kok
50c5e9a2dd Merge remote-tracking branch 'upstream/master' into sync-v4-master-20230612 2023-06-12 15:57:10 +02:00
Adriane Boyd
c4112a1da3
Require that all SpanGroup spans are from the current doc (#12569)
* Require that all SpanGroup spans are from the current doc

The restriction on only adding spans from the current doc were already
implemented for all operations except for `SpanGroup.__init__`.

Initialize copied spans for `SpanGroup.copy` with `Doc.char_span` in
order to validate the character offsets and to make it possible to copy
spans between documents with differing tokenization. Currently there is
no validation that the document texts are identical, but the span char
offsets must be valid spans in the target doc, which prevents you from
ending up with completely invalid spans.

* Undo change in test_beam_overfitting_IO
2023-06-01 19:19:17 +02:00
Basile Dura
6ea4155487
feat: add comparison operators in span.pyi (#12652)
* feat: add comparison operators in span.pyi

remove Cython-specific `__richcmp__`

* fix: comparison operators should be defined for any other object
2023-05-23 08:50:37 +02:00
Basile Dura
95fd46b1dd
feat: add type hinting on SpanGroup.__iter__ (#12642) 2023-05-17 14:20:00 +02:00
Adriane Boyd
b60b027927
Add default option to MorphAnalysis.get (#12545)
* Add default to MorphAnalysis.get

Similar to `dict`, allow a `default` option for `MorphAnalysis.get` for
the user to provide a default return value if the field is not found.
The default return value remains `[]`, which is not the same as
`dict.get`, but is already established as this method's default return
value with the return type `List[str]`. However the new `default` option
does not enforce that the user-provided default is actually `List[str]`.

* Restore test case
2023-04-20 14:06:32 +02:00
Adriane Boyd
5d0f48fe69
Enforce that Span.start/end(_char) remain valid and in sync (#12268)
* Enforce that Span.start/end(_char) remain valid and in sync

Allowing span attributes to be writable starting in v3 has made it
possible for the internal `Span.start/end/start_char/end_char` to get
out-of-sync or have invalid values.

This checks that the values are valid and syncs the token and char
offsets if any attributes are modified directly. It does not yet handle
the case where the underlying doc is modified.

* Format
2023-04-06 16:01:59 +02:00
Adriane Boyd
4a1ec332de
Add Span.kb_id/Span.id strings to Doc/DocBin serialization if set (#12493)
* Add Span.kb_id/Span.id strings to Doc/DocBin serialization if set

* Format
2023-04-03 15:11:12 +02:00
Adriane Boyd
4538ceb507
Remove redundant strings.add for Doc.char_span (#12429) 2023-04-03 11:38:56 +02:00
Raphael Mitsch
d85df9d577
Fix Span.sents for edge case of Span being the only Span in the last sentence of a Doc. (#12484) 2023-03-29 18:54:47 +02:00
Raphael Mitsch
e8cab4625c
Fix sentence indexing bug in Span.sents (#12405)
* Add test for partial sentences in ent.sents.

* Removed unneeded import.

* Format. Simplify code.
2023-03-14 10:21:53 +01:00
Adriane Boyd
da75896ef5
Return Tuple[Span] for all Doc/Span attrs that provide spans (#12288)
* Return Tuple[Span] for all Doc/Span attrs that provide spans

* Update Span types
2023-03-01 16:00:02 +01:00
Adriane Boyd
df4c069a13
Remove backoff from .vector to .tensor (#12292) 2023-02-23 11:36:50 +01:00
Adriane Boyd
b95123060a
Make Span.char_span optional args keyword-only (#12257)
* Make Span.char_span optional args keyword-only

* Make kb_id and following kw-only

* Format
2023-02-15 12:34:33 +01:00
Adriane Boyd
cbc2ae933e
Remove unused Span.char_span(id=) (#12250) 2023-02-08 14:46:07 +01:00
Adriane Boyd
5089efa2d0
Use the same tuple in Span cmp and hash (#12251) 2023-02-08 14:28:34 +01:00
Adriane Boyd
cd95b29053 Merge remote-tracking branch 'upstream/master' into chore/update-v4-from-master-7 2023-02-02 13:06:15 +01:00
Adriane Boyd
5f8a398bb9
Add span_id to Span.char_span, update Doc/Span.char_span docs (#12196)
* Add span_id to Span.char_span, update Doc/Span.char_span docs

`Span.char_span(id=)` should be removed in the future.

* Also use Union[int, str] in Doc docstring
2023-01-27 15:09:17 +01:00
Simon Gurcke
774c10fa39
Add alignment_mode argument to Span.char_span() (#12145)
* Add alignment_mode argument to Span.char_span()

* Update website

* Update spacy/tokens/span.pyx

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Add test

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2023-01-27 11:43:40 +01:00
Paul O'Leary McCann
de360bc981
Refactor lexeme mem passing (#12125)
* Don't pass mem pool to new lexeme function

* Remove unused mem from function args

Two methods calling _new_lexeme, get and get_by_orth, took mem arguments
just to call the internal method. That's no longer necessary, so this
cleans it up.

* prettier formatting

* Remove more unused mem args
2023-01-25 12:50:21 +09:00
Daniël de Kok
207565a788 Merge remote-tracking branch 'upstream/master' into chore/v4-merge-master-20221222 2022-12-22 10:08:54 +01:00
Raphael Mitsch
eef3d950b4
Fix SpanGroup and Span typing (#12009)
* Correct Span.label, Span.kb_id types. Fix SpanGroup.__iter__().

* Extend test.

* Rename test. Fix typo.

* Add comment.

* Fix types for Span.label, Span.kb_id, Span.char_span().

* Update spacy/tests/doc/test_span_group.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update docs.

* Fix typo.

* Update spacy/tokens/span_group.pyx

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-12-21 18:54:27 +01:00
Edward
ca75190a3d
Custom extensions for spans with equal boundaries (#11429)
* Init

* Fix return type for mypy

* adjust types and improve setting new attributes

* Add underscore changes to json conversion

* Add test and underscore changes to from_docs

* add underscore changes and test to span.to_doc

* update return values

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Add types to function

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* adjust formatting

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* shorten return type

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* add helper function to improve readability

* Improve code and add comments

* rerun azure tests

* Fix tests for json conversion

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-12-12 08:55:53 +01:00
Adriane Boyd
0591e67265
Cast to uint64 for all array-based doc representations (#11933)
* Convert all individual values explicitly to uint64 for array-based doc representations

* Temporarily test with latest numpy v1.24.0rc

* Remove unnecessary conversion from attr_t

* Reduce number of individual casts

* Convert specifically from int32 to uint64

* Revert "Temporarily test with latest numpy v1.24.0rc"

This reverts commit eb0e3c5006.

* Also use int32 in tests
2022-12-12 08:45:35 +01:00
svlandeg
04fea09ffd Merge branch 'copy_master' into copy_v4 2022-12-05 08:56:15 +01:00
Edward
e79910d57e
Remove sentiment extension (#11722)
* remove sentiment attribute

* remove sentiment from docs

* add test for backwards compatibility

* replace from_disk with from_bytes

* Fix docs and format file

* Fix formatting
2022-11-23 13:09:32 +01:00
Adriane Boyd
ea326cf47d
Fix types for Span.id and Span.id_ (#11744) 2022-11-07 08:11:13 +01:00
Adriane Boyd
40e1000db0
Restore Doc attr getter values in Doc.to_json (#11700) 2022-11-03 11:49:08 +01:00
Adriane Boyd
103b24fb25 Merge remote-tracking branch 'upstream/master' into chore/update-v4-from-master 2022-10-21 09:13:32 +02:00
Adriane Boyd
7e56701057 Merge remote-tracking branch 'upstream/master' into chore/update-develop-from-master-v3.5 2022-10-20 13:38:49 +02:00