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19650ebb52
* enable fuzzy matching * add fuzzy param to EntityMatcher * include rapidfuzz_capi not yet used * fix type * add FUZZY predicate * add fuzzy attribute list * fix type properly * tidying * remove unnecessary dependency * handle fuzzy sets * simplify fuzzy sets * case fix * switch to FUZZYn predicates use Levenshtein distance. remove fuzzy param. remove rapidfuzz_capi. * revert changes added for fuzzy param * switch to polyleven (Python package) * enable fuzzy matching * add fuzzy param to EntityMatcher * include rapidfuzz_capi not yet used * fix type * add FUZZY predicate * add fuzzy attribute list * fix type properly * tidying * remove unnecessary dependency * handle fuzzy sets * simplify fuzzy sets * case fix * switch to FUZZYn predicates use Levenshtein distance. remove fuzzy param. remove rapidfuzz_capi. * revert changes added for fuzzy param * switch to polyleven (Python package) * fuzzy match only on oov tokens * remove polyleven * exclude whitespace tokens * don't allow more edits than characters * fix min distance * reinstate FUZZY operator with length-based distance function * handle sets inside regex operator * remove is_oov check * attempt build fix no mypy failure locally * re-attempt build fix * don't overwrite fuzzy param value * move fuzzy_match to its own Python module to allow patching * move fuzzy_match back inside Matcher simplify logic and add tests * Format tests * Parametrize fuzzyn tests * Parametrize and merge fuzzy+set tests * Format * Move fuzzy_match to a standalone method * Change regex kwarg type to bool * Add types for fuzzy_match - Refactor variable names - Add test for symmetrical behavior * Parametrize fuzzyn+set tests * Minor refactoring for fuzz/fuzzy * Make fuzzy_match a Matcher kwarg * Update type for _default_fuzzy_match * don't overwrite function param * Rename to fuzzy_compare * Update fuzzy_compare default argument declarations * allow fuzzy_compare override from EntityRuler * define new Matcher keyword arg * fix type definition * Implement fuzzy_compare config option for EntityRuler and SpanRuler * Rename _default_fuzzy_compare to fuzzy_compare, remove from reexported objects * Use simpler fuzzy_compare algorithm * Update types * Increase minimum to 2 in fuzzy_compare to allow one transposition * Fix predicate keys and matching for SetPredicate with FUZZY and REGEX * Add FUZZY6..9 * Add initial docs * Increase default fuzzy to rounded 30% of pattern length * Update docs for fuzzy_compare in components * Update EntityRuler and SpanRuler API docs * Rename EntityRuler and SpanRuler setting to matcher_fuzzy_compare To having naming similar to `phrase_matcher_attr`, rename `fuzzy_compare` setting for `EntityRuler` and `SpanRuler` to `matcher_fuzzy_compare. Organize next to `phrase_matcher_attr` in docs. * Fix schema aliases Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix typo Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Add FUZZY6-9 operators and update tests * Parameterize test over greedy Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix type for fuzzy_compare to remove Optional * Rename to spacy.levenshtein_compare.v1, move to spacy.matcher.levenshtein * Update docs following levenshtein_compare renaming Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
354 lines
19 KiB
Markdown
354 lines
19 KiB
Markdown
---
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title: SpanRuler
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tag: class
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source: spacy/pipeline/span_ruler.py
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new: 3.3
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teaser: 'Pipeline component for rule-based span and named entity recognition'
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api_string_name: span_ruler
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api_trainable: false
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---
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The span ruler lets you add spans to [`Doc.spans`](/api/doc#spans) and/or
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[`Doc.ents`](/api/doc#ents) using token-based rules or exact phrase matches. For
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usage examples, see the docs on
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[rule-based span matching](/usage/rule-based-matching#spanruler).
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## Assigned Attributes {#assigned-attributes}
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Matches will be saved to `Doc.spans[spans_key]` as a
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[`SpanGroup`](/api/spangroup) and/or to `Doc.ents`, where the annotation is
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saved in the `Token.ent_type` and `Token.ent_iob` fields.
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| Location | Value |
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| ---------------------- | ----------------------------------------------------------------- |
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| `Doc.spans[spans_key]` | The annotated spans. ~~SpanGroup~~ |
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| `Doc.ents` | The annotated spans. ~~Tuple[Span]~~ |
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| `Token.ent_iob` | An enum encoding of the IOB part of the named entity tag. ~~int~~ |
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| `Token.ent_iob_` | The IOB part of the named entity tag. ~~str~~ |
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| `Token.ent_type` | The label part of the named entity tag (hash). ~~int~~ |
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| `Token.ent_type_` | The label part of the named entity tag. ~~str~~ |
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## Config and implementation {#config}
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The default config is defined by the pipeline component factory and describes
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how the component should be configured. You can override its settings via the
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`config` argument on [`nlp.add_pipe`](/api/language#add_pipe) or in your
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[`config.cfg`](/usage/training#config).
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> #### Example
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>
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> ```python
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> config = {
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> "spans_key": "my_spans",
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> "validate": True,
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> "overwrite": False,
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> }
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> nlp.add_pipe("span_ruler", config=config)
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> ```
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| Setting | Description |
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| ---------------------------------------------------- | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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| `spans_key` | The spans key to save the spans under. If `None`, no spans are saved. Defaults to `"ruler"`. ~~Optional[str]~~ |
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| `spans_filter` | The optional method to filter spans before they are assigned to doc.spans. Defaults to `None`. ~~Optional[Callable[[Iterable[Span], Iterable[Span]], List[Span]]]~~ |
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| `annotate_ents` | Whether to save spans to doc.ents. Defaults to `False`. ~~bool~~ |
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| `ents_filter` | The method to filter spans before they are assigned to doc.ents. Defaults to `util.filter_chain_spans`. ~~Callable[[Iterable[Span], Iterable[Span]], List[Span]]~~ |
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| `phrase_matcher_attr` | Token attribute to match on, passed to the internal `PhraseMatcher` as `attr`. Defaults to `None`. ~~Optional[Union[int, str]]~~ |
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| `matcher_fuzzy_compare` <Tag variant="new">3.5</Tag> | The fuzzy comparison method, passed on to the internal `Matcher`. Defaults to `spacy.matcher.levenshtein.levenshtein_compare`. ~~Callable~~ |
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| `validate` | Whether patterns should be validated, passed to `Matcher` and `PhraseMatcher` as `validate`. Defaults to `False`. ~~bool~~ |
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| `overwrite` | Whether to remove any existing spans under `Doc.spans[spans key]` if `spans_key` is set, or to remove any ents under `Doc.ents` if `annotate_ents` is set. Defaults to `True`. ~~bool~~ |
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| `scorer` | The scoring method. Defaults to [`Scorer.score_spans`](/api/scorer#score_spans) for `Doc.spans[spans_key]` with overlapping spans allowed. ~~Optional[Callable]~~ |
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```python
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%%GITHUB_SPACY/spacy/pipeline/span_ruler.py
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```
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## SpanRuler.\_\_init\_\_ {#init tag="method"}
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Initialize the span ruler. If patterns are supplied here, they need to be a list
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of dictionaries with a `"label"` and `"pattern"` key. A pattern can either be a
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token pattern (list) or a phrase pattern (string). For example:
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`{"label": "ORG", "pattern": "Apple"}`.
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> #### Example
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>
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> ```python
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> # Construction via add_pipe
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> ruler = nlp.add_pipe("span_ruler")
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>
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> # Construction from class
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> from spacy.pipeline import SpanRuler
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> ruler = SpanRuler(nlp, overwrite=True)
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> ```
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| Name | Description |
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| ---------------------------------------------------- | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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| `nlp` | The shared nlp object to pass the vocab to the matchers and process phrase patterns. ~~Language~~ |
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| `name` | Instance name of the current pipeline component. Typically passed in automatically from the factory when the component is added. Used to disable the current span ruler while creating phrase patterns with the nlp object. ~~str~~ |
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| _keyword-only_ | |
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| `spans_key` | The spans key to save the spans under. If `None`, no spans are saved. Defaults to `"ruler"`. ~~Optional[str]~~ |
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| `spans_filter` | The optional method to filter spans before they are assigned to doc.spans. Defaults to `None`. ~~Optional[Callable[[Iterable[Span], Iterable[Span]], List[Span]]]~~ |
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| `annotate_ents` | Whether to save spans to doc.ents. Defaults to `False`. ~~bool~~ |
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| `ents_filter` | The method to filter spans before they are assigned to doc.ents. Defaults to `util.filter_chain_spans`. ~~Callable[[Iterable[Span], Iterable[Span]], List[Span]]~~ |
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| `phrase_matcher_attr` | Token attribute to match on, passed to the internal PhraseMatcher as `attr`. Defaults to `None`. ~~Optional[Union[int, str]]~~ |
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| `matcher_fuzzy_compare` <Tag variant="new">3.5</Tag> | The fuzzy comparison method, passed on to the internal `Matcher`. Defaults to `spacy.matcher.levenshtein.levenshtein_compare`. ~~Callable~~ |
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| `validate` | Whether patterns should be validated, passed to Matcher and PhraseMatcher as `validate`. Defaults to `False`. ~~bool~~ |
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| `overwrite` | Whether to remove any existing spans under `Doc.spans[spans key]` if `spans_key` is set, or to remove any ents under `Doc.ents` if `annotate_ents` is set. Defaults to `True`. ~~bool~~ |
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| `scorer` | The scoring method. Defaults to [`Scorer.score_spans`](/api/scorer#score_spans) for `Doc.spans[spans_key]` with overlapping spans allowed. ~~Optional[Callable]~~ |
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## SpanRuler.initialize {#initialize tag="method"}
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Initialize the component with data and used before training to load in rules
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from a [pattern file](/usage/rule-based-matching/#spanruler-files). This method
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is typically called by [`Language.initialize`](/api/language#initialize) and
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lets you customize arguments it receives via the
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[`[initialize.components]`](/api/data-formats#config-initialize) block in the
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config. Any existing patterns are removed on initialization.
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> #### Example
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>
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> ```python
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> span_ruler = nlp.add_pipe("span_ruler")
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> span_ruler.initialize(lambda: [], nlp=nlp, patterns=patterns)
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> ```
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>
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> ```ini
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> ### config.cfg
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> [initialize.components.span_ruler]
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>
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> [initialize.components.span_ruler.patterns]
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> @readers = "srsly.read_jsonl.v1"
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> path = "corpus/span_ruler_patterns.jsonl
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> ```
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| Name | Description |
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| -------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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| `get_examples` | Function that returns gold-standard annotations in the form of [`Example`](/api/example) objects. Not used by the `SpanRuler`. ~~Callable[[], Iterable[Example]]~~ |
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| _keyword-only_ | |
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| `nlp` | The current `nlp` object. Defaults to `None`. ~~Optional[Language]~~ |
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| `patterns` | The list of patterns. Defaults to `None`. ~~Optional[Sequence[Dict[str, Union[str, List[Dict[str, Any]]]]]]~~ |
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## SpanRuler.\_\len\_\_ {#len tag="method"}
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The number of all patterns added to the span ruler.
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> #### Example
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>
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> ```python
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> ruler = nlp.add_pipe("span_ruler")
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> assert len(ruler) == 0
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> ruler.add_patterns([{"label": "ORG", "pattern": "Apple"}])
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> assert len(ruler) == 1
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> ```
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| Name | Description |
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| ----------- | ------------------------------- |
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| **RETURNS** | The number of patterns. ~~int~~ |
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## SpanRuler.\_\_contains\_\_ {#contains tag="method"}
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Whether a label is present in the patterns.
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> #### Example
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>
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> ```python
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> ruler = nlp.add_pipe("span_ruler")
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> ruler.add_patterns([{"label": "ORG", "pattern": "Apple"}])
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> assert "ORG" in ruler
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> assert not "PERSON" in ruler
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> ```
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| Name | Description |
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| ----------- | --------------------------------------------------- |
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| `label` | The label to check. ~~str~~ |
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| **RETURNS** | Whether the span ruler contains the label. ~~bool~~ |
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## SpanRuler.\_\_call\_\_ {#call tag="method"}
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Find matches in the `Doc` and add them to `doc.spans[span_key]` and/or
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`doc.ents`. Typically, this happens automatically after the component has been
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added to the pipeline using [`nlp.add_pipe`](/api/language#add_pipe). If the
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span ruler was initialized with `overwrite=True`, existing spans and entities
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will be removed.
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> #### Example
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>
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> ```python
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> ruler = nlp.add_pipe("span_ruler")
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> ruler.add_patterns([{"label": "ORG", "pattern": "Apple"}])
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>
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> doc = nlp("A text about Apple.")
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> spans = [(span.text, span.label_) for span in doc.spans["ruler"]]
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> assert spans == [("Apple", "ORG")]
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> ```
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| Name | Description |
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| ----------- | -------------------------------------------------------------------- |
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| `doc` | The `Doc` object to process, e.g. the `Doc` in the pipeline. ~~Doc~~ |
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| **RETURNS** | The modified `Doc` with added spans/entities. ~~Doc~~ |
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## SpanRuler.add_patterns {#add_patterns tag="method"}
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Add patterns to the span ruler. A pattern can either be a token pattern (list of
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dicts) or a phrase pattern (string). For more details, see the usage guide on
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[rule-based matching](/usage/rule-based-matching).
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> #### Example
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>
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> ```python
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> patterns = [
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> {"label": "ORG", "pattern": "Apple"},
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> {"label": "GPE", "pattern": [{"lower": "san"}, {"lower": "francisco"}]}
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> ]
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> ruler = nlp.add_pipe("span_ruler")
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> ruler.add_patterns(patterns)
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> ```
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| Name | Description |
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| ---------- | ---------------------------------------------------------------- |
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| `patterns` | The patterns to add. ~~List[Dict[str, Union[str, List[dict]]]]~~ |
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## SpanRuler.remove {#remove tag="method"}
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Remove patterns by label from the span ruler. A `ValueError` is raised if the
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label does not exist in any patterns.
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> #### Example
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>
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> ```python
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> patterns = [{"label": "ORG", "pattern": "Apple", "id": "apple"}]
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> ruler = nlp.add_pipe("span_ruler")
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> ruler.add_patterns(patterns)
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> ruler.remove("ORG")
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> ```
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| Name | Description |
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| ------- | -------------------------------------- |
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| `label` | The label of the pattern rule. ~~str~~ |
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## SpanRuler.remove_by_id {#remove_by_id tag="method"}
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Remove patterns by ID from the span ruler. A `ValueError` is raised if the ID
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does not exist in any patterns.
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> #### Example
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>
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> ```python
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> patterns = [{"label": "ORG", "pattern": "Apple", "id": "apple"}]
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> ruler = nlp.add_pipe("span_ruler")
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> ruler.add_patterns(patterns)
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> ruler.remove_by_id("apple")
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> ```
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| Name | Description |
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| ------------ | ----------------------------------- |
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| `pattern_id` | The ID of the pattern rule. ~~str~~ |
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## SpanRuler.clear {#clear tag="method"}
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Remove all patterns the span ruler.
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> #### Example
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>
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> ```python
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> patterns = [{"label": "ORG", "pattern": "Apple", "id": "apple"}]
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> ruler = nlp.add_pipe("span_ruler")
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> ruler.add_patterns(patterns)
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> ruler.clear()
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> ```
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## SpanRuler.to_disk {#to_disk tag="method"}
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Save the span ruler patterns to a directory. The patterns will be saved as
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newline-delimited JSON (JSONL).
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> #### Example
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>
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> ```python
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> ruler = nlp.add_pipe("span_ruler")
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> ruler.to_disk("/path/to/span_ruler")
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> ```
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| Name | Description |
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| ------ | ------------------------------------------------------------------------------------------------------------------------------------------ |
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| `path` | A path to a directory, which will be created if it doesn't exist. Paths may be either strings or `Path`-like objects. ~~Union[str, Path]~~ |
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## SpanRuler.from_disk {#from_disk tag="method"}
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Load the span ruler from a path.
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> #### Example
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>
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> ```python
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> ruler = nlp.add_pipe("span_ruler")
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> ruler.from_disk("/path/to/span_ruler")
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> ```
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| Name | Description |
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| ----------- | ----------------------------------------------------------------------------------------------- |
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| `path` | A path to a directory. Paths may be either strings or `Path`-like objects. ~~Union[str, Path]~~ |
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| **RETURNS** | The modified `SpanRuler` object. ~~SpanRuler~~ |
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## SpanRuler.to_bytes {#to_bytes tag="method"}
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Serialize the span ruler to a bytestring.
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> #### Example
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>
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> ```python
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> ruler = nlp.add_pipe("span_ruler")
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> ruler_bytes = ruler.to_bytes()
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> ```
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| Name | Description |
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| ----------- | ---------------------------------- |
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| **RETURNS** | The serialized patterns. ~~bytes~~ |
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## SpanRuler.from_bytes {#from_bytes tag="method"}
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Load the pipe from a bytestring. Modifies the object in place and returns it.
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> #### Example
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>
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> ```python
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> ruler_bytes = ruler.to_bytes()
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> ruler = nlp.add_pipe("span_ruler")
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> ruler.from_bytes(ruler_bytes)
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> ```
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| Name | Description |
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| ------------ | ---------------------------------------------- |
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| `bytes_data` | The bytestring to load. ~~bytes~~ |
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| **RETURNS** | The modified `SpanRuler` object. ~~SpanRuler~~ |
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## SpanRuler.labels {#labels tag="property"}
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All labels present in the match patterns.
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| Name | Description |
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| ----------- | -------------------------------------- |
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| **RETURNS** | The string labels. ~~Tuple[str, ...]~~ |
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## SpanRuler.ids {#ids tag="property"}
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All IDs present in the `id` property of the match patterns.
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| Name | Description |
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| ----------- | ----------------------------------- |
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| **RETURNS** | The string IDs. ~~Tuple[str, ...]~~ |
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## SpanRuler.patterns {#patterns tag="property"}
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All patterns that were added to the span ruler.
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| Name | Description |
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| ----------- | ---------------------------------------------------------------------------------------- |
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| **RETURNS** | The original patterns, one dictionary per pattern. ~~List[Dict[str, Union[str, dict]]]~~ |
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## Attributes {#attributes}
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| Name | Description |
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| ---------------- | -------------------------------------------------------------------------------- |
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| `key` | The spans key that spans are saved under. ~~Optional[str]~~ |
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| `matcher` | The underlying matcher used to process token patterns. ~~Matcher~~ |
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| `phrase_matcher` | The underlying phrase matcher used to process phrase patterns. ~~PhraseMatcher~~ |
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