spaCy/spacy/tests
Sofie Van Landeghem 569cc98982
Update spaCy for thinc 8.0.0 (#4920)
* Add load_from_config function

* Add train_from_config script

* Merge configs and expose via spacy.config

* Fix script

* Suggest create_evaluation_callback

* Hard-code for NER

* Fix errors

* Register command

* Add TODO

* Update train-from-config todos

* Fix imports

* Allow delayed setting of parser model nr_class

* Get train-from-config working

* Tidy up and fix scores and printing

* Hide traceback if cancelled

* Fix weighted score formatting

* Fix score formatting

* Make output_path optional

* Add Tok2Vec component

* Tidy up and add tok2vec_tensors

* Add option to copy docs in nlp.update

* Copy docs in nlp.update

* Adjust nlp.update() for set_annotations

* Don't shuffle pipes in nlp.update, decruft

* Support set_annotations arg in component update

* Support set_annotations in parser update

* Add get_gradients method

* Add get_gradients to parser

* Update errors.py

* Fix problems caused by merge

* Add _link_components method in nlp

* Add concept of 'listeners' and ControlledModel

* Support optional attributes arg in ControlledModel

* Try having tok2vec component in pipeline

* Fix tok2vec component

* Fix config

* Fix tok2vec

* Update for Example

* Update for Example

* Update config

* Add eg2doc util

* Update and add schemas/types

* Update schemas

* Fix nlp.update

* Fix tagger

* Remove hacks from train-from-config

* Remove hard-coded config str

* Calculate loss in tok2vec component

* Tidy up and use function signatures instead of models

* Support union types for registry models

* Minor cleaning in Language.update

* Make ControlledModel specifically Tok2VecListener

* Fix train_from_config

* Fix tok2vec

* Tidy up

* Add function for bilstm tok2vec

* Fix type

* Fix syntax

* Fix pytorch optimizer

* Add example configs

* Update for thinc describe changes

* Update for Thinc changes

* Update for dropout/sgd changes

* Update for dropout/sgd changes

* Unhack gradient update

* Work on refactoring _ml

* Remove _ml.py module

* WIP upgrade cli scripts for thinc

* Move some _ml stuff to util

* Import link_vectors from util

* Update train_from_config

* Import from util

* Import from util

* Temporarily add ml.component_models module

* Move ml methods

* Move typedefs

* Update load vectors

* Update gitignore

* Move imports

* Add PrecomputableAffine

* Fix imports

* Fix imports

* Fix imports

* Fix missing imports

* Update CLI scripts

* Update spacy.language

* Add stubs for building the models

* Update model definition

* Update create_default_optimizer

* Fix import

* Fix comment

* Update imports in tests

* Update imports in spacy.cli

* Fix import

* fix obsolete thinc imports

* update srsly pin

* from thinc to ml_datasets for example data such as imdb

* update ml_datasets pin

* using STATE.vectors

* small fix

* fix Sentencizer.pipe

* black formatting

* rename Affine to Linear as in thinc

* set validate explicitely to True

* rename with_square_sequences to with_list2padded

* rename with_flatten to with_list2array

* chaining layernorm

* small fixes

* revert Optimizer import

* build_nel_encoder with new thinc style

* fixes using model's get and set methods

* Tok2Vec in component models, various fixes

* fix up legacy tok2vec code

* add model initialize calls

* add in build_tagger_model

* small fixes

* setting model dims

* fixes for ParserModel

* various small fixes

* initialize thinc Models

* fixes

* consistent naming of window_size

* fixes, removing set_dropout

* work around Iterable issue

* remove legacy tok2vec

* util fix

* fix forward function of tok2vec listener

* more fixes

* trying to fix PrecomputableAffine (not succesful yet)

* alloc instead of allocate

* add morphologizer

* rename residual

* rename fixes

* Fix predict function

* Update parser and parser model

* fixing few more tests

* Fix precomputable affine

* Update component model

* Update parser model

* Move backprop padding to own function, for test

* Update test

* Fix p. affine

* Update NEL

* build_bow_text_classifier and extract_ngrams

* Fix parser init

* Fix test add label

* add build_simple_cnn_text_classifier

* Fix parser init

* Set gpu off by default in example

* Fix tok2vec listener

* Fix parser model

* Small fixes

* small fix for PyTorchLSTM parameters

* revert my_compounding hack (iterable fixed now)

* fix biLSTM

* Fix uniqued

* PyTorchRNNWrapper fix

* small fixes

* use helper function to calculate cosine loss

* small fixes for build_simple_cnn_text_classifier

* putting dropout default at 0.0 to ensure the layer gets built

* using thinc util's set_dropout_rate

* moving layer normalization inside of maxout definition to optimize dropout

* temp debugging in NEL

* fixed NEL model by using init defaults !

* fixing after set_dropout_rate refactor

* proper fix

* fix test_update_doc after refactoring optimizers in thinc

* Add CharacterEmbed layer

* Construct tagger Model

* Add missing import

* Remove unused stuff

* Work on textcat

* fix test (again :)) after optimizer refactor

* fixes to allow reading Tagger from_disk without overwriting dimensions

* don't build the tok2vec prematuraly

* fix CharachterEmbed init

* CharacterEmbed fixes

* Fix CharacterEmbed architecture

* fix imports

* renames from latest thinc update

* one more rename

* add initialize calls where appropriate

* fix parser initialization

* Update Thinc version

* Fix errors, auto-format and tidy up imports

* Fix validation

* fix if bias is cupy array

* revert for now

* ensure it's a numpy array before running bp in ParserStepModel

* no reason to call require_gpu twice

* use CupyOps.to_numpy instead of cupy directly

* fix initialize of ParserModel

* remove unnecessary import

* fixes for CosineDistance

* fix device renaming

* use refactored loss functions (Thinc PR 251)

* overfitting test for tagger

* experimental settings for the tagger: avoid zero-init and subword normalization

* clean up tagger overfitting test

* use previous default value for nP

* remove toy config

* bringing layernorm back (had a bug - fixed in thinc)

* revert setting nP explicitly

* remove setting default in constructor

* restore values as they used to be

* add overfitting test for NER

* add overfitting test for dep parser

* add overfitting test for textcat

* fixing init for linear (previously affine)

* larger eps window for textcat

* ensure doc is not None

* Require newer thinc

* Make float check vaguer

* Slop the textcat overfit test more

* Fix textcat test

* Fix exclusive classes for textcat

* fix after renaming of alloc methods

* fixing renames and mandatory arguments (staticvectors WIP)

* upgrade to thinc==8.0.0.dev3

* refer to vocab.vectors directly instead of its name

* rename alpha to learn_rate

* adding hashembed and staticvectors dropout

* upgrade to thinc 8.0.0.dev4

* add name back to avoid warning W020

* thinc dev4

* update srsly

* using thinc 8.0.0a0 !

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
Co-authored-by: Ines Montani <ines@ines.io>
2020-01-29 17:06:46 +01:00
..
doc Modify morphology to support arbitrary features (#4932) 2020-01-23 22:01:54 +01:00
lang Un-xfail passing tests 2019-12-25 18:02:20 +01:00
matcher Add better schemas and validation using Pydantic (#4831) 2019-12-25 12:39:49 +01:00
morphology Modify morphology to support arbitrary features (#4932) 2020-01-23 22:01:54 +01:00
parser Update spaCy for thinc 8.0.0 (#4920) 2020-01-29 17:06:46 +01:00
pipeline Update spaCy for thinc 8.0.0 (#4920) 2020-01-29 17:06:46 +01:00
regression Update spaCy for thinc 8.0.0 (#4920) 2020-01-29 17:06:46 +01:00
serialize Drop Python 2.7 and 3.5 (#4828) 2019-12-22 01:53:56 +01:00
tokenizer Drop Python 2.7 and 3.5 (#4828) 2019-12-22 01:53:56 +01:00
vocab_vectors Update spaCy for thinc 8.0.0 (#4920) 2020-01-29 17:06:46 +01:00
__init__.py Revert #4334 2019-09-29 17:32:12 +02:00
conftest.py More formatting changes 2019-12-25 17:59:52 +01:00
README.md Revert #4334 2019-09-29 17:32:12 +02:00
test_architectures.py Update spaCy for thinc 8.0.0 (#4920) 2020-01-29 17:06:46 +01:00
test_cli.py Drop Python 2.7 and 3.5 (#4828) 2019-12-22 01:53:56 +01:00
test_displacy.py Drop Python 2.7 and 3.5 (#4828) 2019-12-22 01:53:56 +01:00
test_gold.py Add support for pos/morphs/lemmas in training data (#4941) 2020-01-28 11:36:29 +01:00
test_language.py Drop Python 2.7 and 3.5 (#4828) 2019-12-22 01:53:56 +01:00
test_lemmatizer.py Drop Python 2.7 and 3.5 (#4828) 2019-12-22 01:53:56 +01:00
test_misc.py Update spaCy for thinc 8.0.0 (#4920) 2020-01-29 17:06:46 +01:00
test_pickles.py Drop Python 2.7 and 3.5 (#4828) 2019-12-22 01:53:56 +01:00
test_scorer.py Drop Python 2.7 and 3.5 (#4828) 2019-12-22 01:53:56 +01:00
test_tok2vec.py Update spaCy for thinc 8.0.0 (#4920) 2020-01-29 17:06:46 +01:00
util.py Drop Python 2.7 and 3.5 (#4828) 2019-12-22 01:53:56 +01:00

spaCy tests

spaCy uses the pytest framework for testing. For more info on this, see the pytest documentation.

Tests for spaCy modules and classes live in their own directories of the same name. For example, tests for the Tokenizer can be found in /tests/tokenizer. All test modules (i.e. directories) also need to be listed in spaCy's setup.py. To be interpreted and run, all test files and test functions need to be prefixed with test_.

⚠️ Important note: As part of our new model training infrastructure, we've moved all model tests to the spacy-models repository. This allows us to test the models separately from the core library functionality.

Table of contents

  1. Running the tests
  2. Dos and don'ts
  3. Parameters
  4. Fixtures
  5. Helpers and utilities
  6. Contributing to the tests

Running the tests

To show print statements, run the tests with py.test -s. To abort after the first failure, run them with py.test -x.

py.test spacy                        # run basic tests
py.test spacy --slow                 # run basic and slow tests

You can also run tests in a specific file or directory, or even only one specific test:

py.test spacy/tests/tokenizer  # run all tests in directory
py.test spacy/tests/tokenizer/test_exceptions.py # run all tests in file
py.test spacy/tests/tokenizer/test_exceptions.py::test_tokenizer_handles_emoji # run specific test

Dos and don'ts

To keep the behaviour of the tests consistent and predictable, we try to follow a few basic conventions:

  • Test names should follow a pattern of test_[module]_[tested behaviour]. For example: test_tokenizer_keeps_email or test_spans_override_sentiment.
  • If you're testing for a bug reported in a specific issue, always create a regression test. Regression tests should be named test_issue[ISSUE NUMBER] and live in the regression directory.
  • Only use @pytest.mark.xfail for tests that should pass, but currently fail. To test for desired negative behaviour, use assert not in your test.
  • Very extensive tests that take a long time to run should be marked with @pytest.mark.slow. If your slow test is testing important behaviour, consider adding an additional simpler version.
  • If tests require loading the models, they should be added to the spacy-models tests.
  • Before requiring the models, always make sure there is no other way to test the particular behaviour. In a lot of cases, it's sufficient to simply create a Doc object manually. See the section on helpers and utility functions for more info on this.
  • Avoid unnecessary imports. There should never be a need to explicitly import spaCy at the top of a file, and many components are available as fixtures. You should also avoid wildcard imports (from module import *).
  • If you're importing from spaCy, always use absolute imports. For example: from spacy.language import Language.
  • Don't forget the unicode declarations at the top of each file. This way, unicode strings won't have to be prefixed with u.
  • Try to keep the tests readable and concise. Use clear and descriptive variable names (doc, tokens and text are great), keep it short and only test for one behaviour at a time.

Parameters

If the test cases can be extracted from the test, always parametrize them instead of hard-coding them into the test:

@pytest.mark.parametrize('text', ["google.com", "spacy.io"])
def test_tokenizer_keep_urls(tokenizer, text):
    tokens = tokenizer(text)
    assert len(tokens) == 1

This will run the test once for each text value. Even if you're only testing one example, it's usually best to specify it as a parameter. This will later make it easier for others to quickly add additional test cases without having to modify the test.

You can also specify parameters as tuples to test with multiple values per test:

@pytest.mark.parametrize('text,length', [("U.S.", 1), ("us.", 2), ("(U.S.", 2)])

To test for combinations of parameters, you can add several parametrize markers:

@pytest.mark.parametrize('text', ["A test sentence", "Another sentence"])
@pytest.mark.parametrize('punct', ['.', '!', '?'])

This will run the test with all combinations of the two parameters text and punct. Use this feature sparingly, though, as it can easily cause unneccessary or undesired test bloat.

Fixtures

Fixtures to create instances of spaCy objects and other components should only be defined once in the global conftest.py. We avoid having per-directory conftest files, as this can easily lead to confusion.

These are the main fixtures that are currently available:

Fixture Description
tokenizer Basic, language-independent tokenizer. Identical to the xx language class.
en_tokenizer, de_tokenizer, ... Creates an English, German etc. tokenizer.
en_vocab Creates an instance of the English Vocab.

The fixtures can be used in all tests by simply setting them as an argument, like this:

def test_module_do_something(en_tokenizer):
    tokens = en_tokenizer("Some text here")

If all tests in a file require a specific configuration, or use the same complex example, it can be helpful to create a separate fixture. This fixture should be added at the top of each file. Make sure to use descriptive names for these fixtures and don't override any of the global fixtures listed above. From looking at a test, it should immediately be clear which fixtures are used, and where they are coming from.

Helpers and utilities

Our new test setup comes with a few handy utility functions that can be imported from util.py.

Constructing a Doc object manually with get_doc()

Loading the models is expensive and not necessary if you're not actually testing the model performance. If all you need ia a Doc object with annotations like heads, POS tags or the dependency parse, you can use get_doc() to construct it manually.

def test_doc_token_api_strings(en_tokenizer):
    text = "Give it back! He pleaded."
    pos = ['VERB', 'PRON', 'PART', 'PUNCT', 'PRON', 'VERB', 'PUNCT']
    heads = [0, -1, -2, -3, 1, 0, -1]
    deps = ['ROOT', 'dobj', 'prt', 'punct', 'nsubj', 'ROOT', 'punct']

    tokens = en_tokenizer(text)
    doc = get_doc(tokens.vocab, [t.text for t in tokens], pos=pos, heads=heads, deps=deps)
    assert doc[0].text == 'Give'
    assert doc[0].lower_ == 'give'
    assert doc[0].pos_ == 'VERB'
    assert doc[0].dep_ == 'ROOT'

You can construct a Doc with the following arguments:

Argument Description
vocab Vocab instance to use. If you're tokenizing before creating a Doc, make sure to use the tokenizer's vocab. Otherwise, you can also use the en_vocab fixture. (required)
words List of words, for example [t.text for t in tokens]. (required)
heads List of heads as integers.
pos List of POS tags as text values.
tag List of tag names as text values.
dep List of dependencies as text values.
ents List of entity tuples with start, end, label (for example (0, 2, 'PERSON')). The label will be looked up in vocab.strings[label].

Here's how to quickly get these values from within spaCy:

doc = nlp(u'Some text here')
print([token.head.i-token.i for token in doc])
print([token.tag_ for token in doc])
print([token.pos_ for token in doc])
print([token.dep_ for token in doc])
print([(ent.start, ent.end, ent.label_) for ent in doc.ents])

Note: There's currently no way of setting the serializer data for the parser without loading the models. If this is relevant to your test, constructing the Doc via get_doc() won't work.

Other utilities

Name Description
apply_transition_sequence(parser, doc, sequence) Perform a series of pre-specified transitions, to put the parser in a desired state.
add_vecs_to_vocab(vocab, vectors) Add list of vector tuples ([("text", [1, 2, 3])]) to given vocab. All vectors need to have the same length.
get_cosine(vec1, vec2) Get cosine for two given vectors.
assert_docs_equal(doc1, doc2) Compare two Doc objects and assert that they're equal. Tests for tokens, tags, dependencies and entities.

Contributing to the tests

There's still a long way to go to finally reach 100% test coverage and we'd appreciate your help! 🙌 You can open an issue on our issue tracker and label it tests, or make a pull request to this repository.

📖 For more information on contributing to spaCy in general, check out our contribution guidelines.