Commit Graph

1494 Commits

Author SHA1 Message Date
Sofie Van Landeghem
569cc98982
Update spaCy for thinc 8.0.0 (#4920)
* Add load_from_config function

* Add train_from_config script

* Merge configs and expose via spacy.config

* Fix script

* Suggest create_evaluation_callback

* Hard-code for NER

* Fix errors

* Register command

* Add TODO

* Update train-from-config todos

* Fix imports

* Allow delayed setting of parser model nr_class

* Get train-from-config working

* Tidy up and fix scores and printing

* Hide traceback if cancelled

* Fix weighted score formatting

* Fix score formatting

* Make output_path optional

* Add Tok2Vec component

* Tidy up and add tok2vec_tensors

* Add option to copy docs in nlp.update

* Copy docs in nlp.update

* Adjust nlp.update() for set_annotations

* Don't shuffle pipes in nlp.update, decruft

* Support set_annotations arg in component update

* Support set_annotations in parser update

* Add get_gradients method

* Add get_gradients to parser

* Update errors.py

* Fix problems caused by merge

* Add _link_components method in nlp

* Add concept of 'listeners' and ControlledModel

* Support optional attributes arg in ControlledModel

* Try having tok2vec component in pipeline

* Fix tok2vec component

* Fix config

* Fix tok2vec

* Update for Example

* Update for Example

* Update config

* Add eg2doc util

* Update and add schemas/types

* Update schemas

* Fix nlp.update

* Fix tagger

* Remove hacks from train-from-config

* Remove hard-coded config str

* Calculate loss in tok2vec component

* Tidy up and use function signatures instead of models

* Support union types for registry models

* Minor cleaning in Language.update

* Make ControlledModel specifically Tok2VecListener

* Fix train_from_config

* Fix tok2vec

* Tidy up

* Add function for bilstm tok2vec

* Fix type

* Fix syntax

* Fix pytorch optimizer

* Add example configs

* Update for thinc describe changes

* Update for Thinc changes

* Update for dropout/sgd changes

* Update for dropout/sgd changes

* Unhack gradient update

* Work on refactoring _ml

* Remove _ml.py module

* WIP upgrade cli scripts for thinc

* Move some _ml stuff to util

* Import link_vectors from util

* Update train_from_config

* Import from util

* Import from util

* Temporarily add ml.component_models module

* Move ml methods

* Move typedefs

* Update load vectors

* Update gitignore

* Move imports

* Add PrecomputableAffine

* Fix imports

* Fix imports

* Fix imports

* Fix missing imports

* Update CLI scripts

* Update spacy.language

* Add stubs for building the models

* Update model definition

* Update create_default_optimizer

* Fix import

* Fix comment

* Update imports in tests

* Update imports in spacy.cli

* Fix import

* fix obsolete thinc imports

* update srsly pin

* from thinc to ml_datasets for example data such as imdb

* update ml_datasets pin

* using STATE.vectors

* small fix

* fix Sentencizer.pipe

* black formatting

* rename Affine to Linear as in thinc

* set validate explicitely to True

* rename with_square_sequences to with_list2padded

* rename with_flatten to with_list2array

* chaining layernorm

* small fixes

* revert Optimizer import

* build_nel_encoder with new thinc style

* fixes using model's get and set methods

* Tok2Vec in component models, various fixes

* fix up legacy tok2vec code

* add model initialize calls

* add in build_tagger_model

* small fixes

* setting model dims

* fixes for ParserModel

* various small fixes

* initialize thinc Models

* fixes

* consistent naming of window_size

* fixes, removing set_dropout

* work around Iterable issue

* remove legacy tok2vec

* util fix

* fix forward function of tok2vec listener

* more fixes

* trying to fix PrecomputableAffine (not succesful yet)

* alloc instead of allocate

* add morphologizer

* rename residual

* rename fixes

* Fix predict function

* Update parser and parser model

* fixing few more tests

* Fix precomputable affine

* Update component model

* Update parser model

* Move backprop padding to own function, for test

* Update test

* Fix p. affine

* Update NEL

* build_bow_text_classifier and extract_ngrams

* Fix parser init

* Fix test add label

* add build_simple_cnn_text_classifier

* Fix parser init

* Set gpu off by default in example

* Fix tok2vec listener

* Fix parser model

* Small fixes

* small fix for PyTorchLSTM parameters

* revert my_compounding hack (iterable fixed now)

* fix biLSTM

* Fix uniqued

* PyTorchRNNWrapper fix

* small fixes

* use helper function to calculate cosine loss

* small fixes for build_simple_cnn_text_classifier

* putting dropout default at 0.0 to ensure the layer gets built

* using thinc util's set_dropout_rate

* moving layer normalization inside of maxout definition to optimize dropout

* temp debugging in NEL

* fixed NEL model by using init defaults !

* fixing after set_dropout_rate refactor

* proper fix

* fix test_update_doc after refactoring optimizers in thinc

* Add CharacterEmbed layer

* Construct tagger Model

* Add missing import

* Remove unused stuff

* Work on textcat

* fix test (again :)) after optimizer refactor

* fixes to allow reading Tagger from_disk without overwriting dimensions

* don't build the tok2vec prematuraly

* fix CharachterEmbed init

* CharacterEmbed fixes

* Fix CharacterEmbed architecture

* fix imports

* renames from latest thinc update

* one more rename

* add initialize calls where appropriate

* fix parser initialization

* Update Thinc version

* Fix errors, auto-format and tidy up imports

* Fix validation

* fix if bias is cupy array

* revert for now

* ensure it's a numpy array before running bp in ParserStepModel

* no reason to call require_gpu twice

* use CupyOps.to_numpy instead of cupy directly

* fix initialize of ParserModel

* remove unnecessary import

* fixes for CosineDistance

* fix device renaming

* use refactored loss functions (Thinc PR 251)

* overfitting test for tagger

* experimental settings for the tagger: avoid zero-init and subword normalization

* clean up tagger overfitting test

* use previous default value for nP

* remove toy config

* bringing layernorm back (had a bug - fixed in thinc)

* revert setting nP explicitly

* remove setting default in constructor

* restore values as they used to be

* add overfitting test for NER

* add overfitting test for dep parser

* add overfitting test for textcat

* fixing init for linear (previously affine)

* larger eps window for textcat

* ensure doc is not None

* Require newer thinc

* Make float check vaguer

* Slop the textcat overfit test more

* Fix textcat test

* Fix exclusive classes for textcat

* fix after renaming of alloc methods

* fixing renames and mandatory arguments (staticvectors WIP)

* upgrade to thinc==8.0.0.dev3

* refer to vocab.vectors directly instead of its name

* rename alpha to learn_rate

* adding hashembed and staticvectors dropout

* upgrade to thinc 8.0.0.dev4

* add name back to avoid warning W020

* thinc dev4

* update srsly

* using thinc 8.0.0a0 !

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
Co-authored-by: Ines Montani <ines@ines.io>
2020-01-29 17:06:46 +01:00
adrianeboyd
06b251dd1e Add support for pos/morphs/lemmas in training data (#4941)
Add support for pos/morphs/lemmas throughout `GoldParse`, `Example`, and
`docs_to_json()`.
2020-01-28 11:36:29 +01:00
adrianeboyd
adc9745718 Modify morphology to support arbitrary features (#4932)
* Restructure tag maps for MorphAnalysis changes

Prepare tag maps for upcoming MorphAnalysis changes that allow
arbritrary features.

* Use default tag map rather than duplicating for ca / uk / vi

* Import tag map into defaults for ga

* Modify tag maps so all morphological fields and features are strings
  * Move features from `"Other"` to the top level
  * Rewrite tuples as strings separated by `","`

* Rewrite morph symbols for fr lemmatizer as strings

* Export MorphAnalysis under spacy.tokens

* Modify morphology to support arbitrary features

Modify `Morphology` and `MorphAnalysis` so that arbitrary features are
supported.

* Modify `MorphAnalysisC` so that it can support arbitrary features and
multiple values per field. `MorphAnalysisC` is redesigned to contain:
  * key: hash of UD FEATS string of morphological features
  * array of `MorphFeatureC` structs that each contain a hash of `Field`
and `Field=Value` for a given morphological feature, which makes it
possible to:
    * find features by field
    * represent multiple values for a given field

* `get_field()` is renamed to `get_by_field()` and is no longer `nogil`.
Instead a new helper function `get_n_by_field()` is `nogil` and returns
`n` features by field.

* `MorphAnalysis.get()` returns all possible values for a field as a
list of individual features such as `["Tense=Pres", "Tense=Past"]`.

* `MorphAnalysis`'s `str()` and `repr()` are the UD FEATS string.

* `Morphology.feats_to_dict()` converts a UD FEATS string to a dict
where:
  * Each field has one entry in the dict
  * Multiple values remain separated by a separator in the value string

* `Token.morph_` returns the UD FEATS string and you can set
`Token.morph_` with a UD FEATS string or with a tag map dict.

* Modify get_by_field to use np.ndarray

Modify `get_by_field()` to use np.ndarray. Remove `max_results` from
`get_n_by_field()` and always iterate over all the fields.

* Rewrite without MorphFeatureC

* Add shortcut for existing feats strings as keys

Add shortcut for existing feats strings as keys in `Morphology.add()`.

* Check for '_' as empty analysis when adding morphs

* Extend helper converters in Morphology

Add and extend helper converters that convert and normalize between:

* UD FEATS strings (`"Case=dat,gen|Number=sing"`)
* per-field dict of feats (`{"Case": "dat,gen", "Number": "sing"}`)
* list of individual features (`["Case=dat", "Case=gen",
"Number=sing"]`)

All converters sort fields and values where applicable.
2020-01-23 22:01:54 +01:00
adrianeboyd
199d89943e Add as_example to Sentencizer pipe() (#4933) 2020-01-22 15:40:31 +01:00
Ines Montani
401946d480 Un-xfail passing tests 2019-12-25 18:02:20 +01:00
Ines Montani
a892821c51 More formatting changes 2019-12-25 17:59:52 +01:00
Ines Montani
33a2682d60
Add better schemas and validation using Pydantic (#4831)
* Remove unicode declarations

* Remove Python 3.5 and 2.7 from CI

* Don't require pathlib

* Replace compat helpers

* Remove OrderedDict

* Use f-strings

* Set Cython compiler language level

* Fix typo

* Re-add OrderedDict for Table

* Update setup.cfg

* Revert CONTRIBUTING.md

* Add better schemas and validation using Pydantic

* Revert lookups.md

* Remove unused import

* Update spacy/schemas.py

Co-Authored-By: Sebastián Ramírez <tiangolo@gmail.com>

* Various small fixes

* Fix docstring

Co-authored-by: Sebastián Ramírez <tiangolo@gmail.com>
2019-12-25 12:39:49 +01:00
Ines Montani
db55577c45
Drop Python 2.7 and 3.5 (#4828)
* Remove unicode declarations

* Remove Python 3.5 and 2.7 from CI

* Don't require pathlib

* Replace compat helpers

* Remove OrderedDict

* Use f-strings

* Set Cython compiler language level

* Fix typo

* Re-add OrderedDict for Table

* Update setup.cfg

* Revert CONTRIBUTING.md

* Revert lookups.md

* Revert top-level.md

* Small adjustments and docs [ci skip]
2019-12-22 01:53:56 +01:00
Ines Montani
21b6d6e0a8 Fix typo 2019-12-21 21:17:31 +01:00
Ines Montani
de33b6d566 Merge branch 'master' into develop 2019-12-21 21:15:46 +01:00
Ines Montani
7c69d30de5 Tidy up and expect warning 2019-12-21 21:14:52 +01:00
Ines Montani
947dba7141 Merge branch 'master' into develop 2019-12-21 19:04:43 +01:00
Ines Montani
cb4145adc7 Tidy up and auto-format 2019-12-21 19:04:17 +01:00
Ines Montani
158b98a3ef Merge branch 'master' into develop 2019-12-21 18:55:03 +01:00
Olamilekan Wahab
a741de7cf6 Adding support for Yoruba Language (#4614)
* Adding Support for Yoruba

* test text

* Updated test string.

* Fixing encoding declaration.

* Adding encoding to stop_words.py

* Added contributor agreement and removed iranlowo.

* Added removed test files and removed iranlowo to keep project bare.

* Returned CONTRIBUTING.md to default state.

* Added delted conftest entries

* Tidy up and auto-format

* Revert CONTRIBUTING.md

Co-authored-by: Ines Montani <ines@ines.io>
2019-12-21 14:11:50 +01:00
tamuhey
1707e77c5e add char_span to Span (#4793) 2019-12-13 15:54:58 +01:00
Sofie Van Landeghem
f9b541f9ef More robust set entities method in KB (#4794)
* add unit test for setting entities with duplicate identifiers

* count the number of actual unique identifiers and throw duplicate warning
2019-12-13 10:45:29 +01:00
adrianeboyd
eb9b1858c4 Add NER map option to convert CLI (#4763)
Instead of a hard-coded NER tag simplification function that was only
intended for NorNE, map NER tags in CoNLL-U converter using a dict
provided as JSON as a command-line option.

Map NER entity types or new tag or to "" for 'O', e.g.:

```
{"PER": "PERSON", "BAD": ""}

=>

B-PER -> B-PERSON
B-BAD -> O
```
2019-12-11 18:20:49 +01:00
adrianeboyd
676e75838f Include Doc.cats in serialization of Doc and DocBin (#4774)
* Include Doc.cats in to_bytes()

* Include Doc.cats in DocBin serialization

* Add tests for serialization of cats

Test serialization of cats for Doc and DocBin.
2019-12-06 14:07:39 +01:00
Antti Ajanki
e626a011cc Improvements to the Finnish language data (#4738)
* Enable lex_attrs on Finnish

* Copy the Danish tokenizer rules to Finnish

Specifically, don't break hyphenated compound words

* Contributor agreement

* A new file for Finnish tokenizer rules instead of including the Danish ones
2019-12-03 12:55:28 +01:00
Christoph Purschke
a7ee4b6f17 new tests & tokenization fixes (#4734)
- added some tests for tokenization issues
- fixed some issues with tokenization of words with hyphen infix
- rewrote the "tokenizer_exceptions.py" file (stemming from the German version)
2019-12-01 23:08:21 +01:00
adrianeboyd
79ba1a3b92 Add lemmas to GoldParse / Example / docs_to_json (#4726) 2019-11-28 14:53:44 +01:00
adrianeboyd
b841d3fe75 Add a tagger-based SentenceRecognizer (#4713)
* Add sent_starts to GoldParse

* Add SentTagger pipeline component

Add `SentTagger` pipeline component as a subclass of `Tagger`.

* Model reduces default parameters from `Tagger` to be small and fast
* Hard-coded set of two labels:
  * S (1): token at beginning of sentence
  * I (0): all other sentence positions
* Sets `token.sent_start` values

* Add sentence segmentation to Scorer

Report `sent_p/r/f` for sentence boundaries, which may be provided by
various pipeline components.

* Add sentence segmentation to CLI evaluate

* Add senttagger metrics/scoring to train CLI

* Rename SentTagger to SentenceRecognizer

* Add SentenceRecognizer to spacy.pipes imports

* Add SentenceRecognizer serialization test

* Shorten component name to sentrec

* Remove duplicates from train CLI output metrics
2019-11-28 11:10:07 +01:00
adrianeboyd
48ea2e8d0f Restructure Sentencizer to follow Pipe API (#4721)
* Restructure Sentencizer to follow Pipe API

Restructure Sentencizer to follow Pipe API so that it can be scored with
`nlp.evaluate()`.

* Add Sentencizer pipe() test
2019-11-27 16:33:34 +01:00
adrianeboyd
9efd3ccbef Update conllu2json MISC column handling (#4715)
Update converter to handle various things in MISC column:

* `SpaceAfter=No` and set raw text accordingly
* plain NER tag
* name=NER (for NorNE)
2019-11-26 16:10:08 +01:00
adrianeboyd
0c9640ced3 Replace old gold alignment with new gold alignment (#4710)
Replace old gold alignment that allowed for some noise in the alignment between raw and orth with the new simpler alignment that requires that the raw and orth strings are identical except for whitespace and capitalization.

* Replace old alignment with new alignment, removing `_align.pyx` and
its tests
* Remove all quote normalizations
* Enable test for new align
  * Modify test case for quote normalization
2019-11-25 23:13:26 +01:00
adrianeboyd
392c4880d9 Restructure Example with merged sents as default (#4632)
* Switch to train_dataset() function in train CLI

* Fixes for pipe() methods in pipeline components

* Don't clobber `examples` variable with `as_example` in pipe() methods
* Remove unnecessary traversals of `examples`

* Update Parser.pipe() for Examples

* Add `as_examples` kwarg to `pipe()` with implementation to return
`Example`s

* Accept `Doc` or `Example` in `pipe()` with `_get_doc()` (copied from
`Pipe`)

* Fixes to Example implementation in spacy.gold

* Move `make_projective` from an attribute of Example to an argument of
`Example.get_gold_parses()`

* Head of 0 are not treated as unset

* Unset heads are set to self rather than `None` (which causes problems
while projectivizing)

* Check for `Doc` (not just not `None`) when creating GoldParses for
pre-merged example

* Don't clobber `examples` variable in `iter_gold_docs()`

* Add/modify gold tests for handling projectivity

* In JSON roundtrip compare results from `dev_dataset` rather than
`train_dataset` to avoid projectivization (and other potential
modifications)

* Add test for projective train vs. nonprojective dev versions of the
same `Doc`

* Handle ignore_misaligned as arg rather than attr

Move `ignore_misaligned` from an attribute of `Example` to an argument
to `Example.get_gold_parses()`, which makes it parallel to
`make_projective`.

Add test with old and new align that checks whether `ignore_misaligned`
errors are raised as expected (only for new align).

* Remove unused attrs from gold.pxd

Remove `ignore_misaligned` and `make_projective` from `gold.pxd`

* Restructure Example with merged sents as default

An `Example` now includes a single `TokenAnnotation` that includes all
the information from one `Doc` (=JSON `paragraph`). If required, the
individual sentences can be returned as a list of examples with
`Example.split_sents()` with no raw text available.

* Input/output a single `Example.token_annotation`

* Add `sent_starts` to `TokenAnnotation` to handle sentence boundaries

* Replace `Example.merge_sents()` with `Example.split_sents()`

* Modify components to use a single `Example.token_annotation`

  * Pipeline components
  * conllu2json converter

* Rework/rename `add_token_annotation()` and `add_doc_annotation()` to
`set_token_annotation()` and `set_doc_annotation()`, functions that set
rather then appending/extending.

* Rename `morphology` to `morphs` in `TokenAnnotation` and `GoldParse`

* Add getters to `TokenAnnotation` to supply default values when a given
attribute is not available

* `Example.get_gold_parses()` in `spacy.gold._make_golds()` is only
applied on single examples, so the `GoldParse` is returned saved in the
provided `Example` rather than creating a new `Example` with no other
internal annotation

* Update tests for API changes and `merge_sents()` vs. `split_sents()`

* Refer to Example.goldparse in iter_gold_docs()

Use `Example.goldparse` in `iter_gold_docs()` instead of `Example.gold`
because a `None` `GoldParse` is generated with ignore_misaligned and
generating it on-the-fly can raise an unwanted AlignmentError

* Fix make_orth_variants()

Fix bug in make_orth_variants() related to conversion from multiple to
one TokenAnnotation per Example.

* Add basic test for make_orth_variants()

* Replace try/except with conditionals

* Replace default morph value with set
2019-11-25 16:03:28 +01:00
Ines Montani
5b36dec7eb Auto-exclude disabled when calling from_disk during load (#4708) 2019-11-25 16:01:22 +01:00
adrianeboyd
2d8c6e1124 Iterate over lr_edges until sents are correct (#4702)
Iterate over lr_edges until all heads are within the current sentence.
Instead of iterating over them for a fixed number of iterations, check
whether the sentence boundaries are correct for the heads and stop when
all are correct. Stop after a maximum of 10 iterations, providing a
warning in this case since the sentence boundaries may not be correct.
2019-11-25 13:06:36 +01:00
adrianeboyd
44829950ba Fix Example details for train CLI / pipeline components (#4624)
* Switch to train_dataset() function in train CLI

* Fixes for pipe() methods in pipeline components

* Don't clobber `examples` variable with `as_example` in pipe() methods
* Remove unnecessary traversals of `examples`

* Update Parser.pipe() for Examples

* Add `as_examples` kwarg to `pipe()` with implementation to return
`Example`s

* Accept `Doc` or `Example` in `pipe()` with `_get_doc()` (copied from
`Pipe`)

* Fixes to Example implementation in spacy.gold

* Move `make_projective` from an attribute of Example to an argument of
`Example.get_gold_parses()`

* Head of 0 are not treated as unset

* Unset heads are set to self rather than `None` (which causes problems
while projectivizing)

* Check for `Doc` (not just not `None`) when creating GoldParses for
pre-merged example

* Don't clobber `examples` variable in `iter_gold_docs()`

* Add/modify gold tests for handling projectivity

* In JSON roundtrip compare results from `dev_dataset` rather than
`train_dataset` to avoid projectivization (and other potential
modifications)

* Add test for projective train vs. nonprojective dev versions of the
same `Doc`

* Handle ignore_misaligned as arg rather than attr

Move `ignore_misaligned` from an attribute of `Example` to an argument
to `Example.get_gold_parses()`, which makes it parallel to
`make_projective`.

Add test with old and new align that checks whether `ignore_misaligned`
errors are raised as expected (only for new align).

* Remove unused attrs from gold.pxd

Remove `ignore_misaligned` and `make_projective` from `gold.pxd`

* Refer to Example.goldparse in iter_gold_docs()

Use `Example.goldparse` in `iter_gold_docs()` instead of `Example.gold`
because a `None` `GoldParse` is generated with ignore_misaligned and
generating it on-the-fly can raise an unwanted AlignmentError

* Update test for ignore_misaligned
2019-11-23 14:32:15 +01:00
Paul O'Leary McCann
f0e3e606a6 Replace python-mecab3 with fugashi for Japanese (#4621)
* Switch from mecab-python3 to fugashi

mecab-python3 has been the best MeCab binding for a long time but it's
not very actively maintained, and since it's based on old SWIG code
distributed with MeCab there's a limit to how effectively it can be
maintained.

Fugashi is a new Cython-based MeCab wrapper I wrote. Since it's not
based on the old SWIG code it's easier to keep it current and make small
deviations from the MeCab C/C++ API where that makes sense.

* Change mecab-python3 to fugashi in setup.cfg

* Change "mecab tags" to "unidic tags"

The tags come from MeCab, but the tag schema is specified by Unidic, so
it's more proper to refer to it that way.

* Update conftest

* Add fugashi link to external deps list for Japanese
2019-11-23 14:31:04 +01:00
Ines Montani
5d4eede1e4 Fix test util imports 2019-11-21 16:28:29 +01:00
GuiGel
8f7ab70870 Bugfix/fix entity ruler from disk (#4670)
* fix EntityRuler from_disk bug

* add contributor file

* Test EntityRuler PhraseMatcher deserialization (#4651)

* newline at end of file

* fix copy paste error

* serializing the EntityRuler by itself

* Add unicode declarations for Python 2 and auto-format
2019-11-21 16:26:37 +01:00
adrianeboyd
054df5d90a Add error for non-string labels (#4690)
Add error when attempting to add non-string labels to `Tagger` or
`TextCategorizer`.
2019-11-21 16:24:10 +01:00
adrianeboyd
d7f32b285c Detect more empty matches in tokenizer.explain() (#4675)
* Detect more empty matches in tokenizer.explain()

* Include a few languages in explain non-slow tests

Mark a few languages in tokenizer.explain() tests as not slow so they're
run by default.
2019-11-20 16:31:29 +01:00
Ines Montani
5bf9ab5b03 Tidy up and auto-format 2019-11-20 13:16:33 +01:00
Ines Montani
7f3b00164a Re-add slow marker 2019-11-20 13:15:59 +01:00
Ines Montani
6e303de717 Auto-format 2019-11-20 13:15:24 +01:00
Ines Montani
2e7c896fe5 Update Tokenizer.explain tests 2019-11-20 13:14:11 +01:00
adrianeboyd
2c876eb672 Add tokenizer explain() debugging method (#4596)
* Expose tokenizer rules as a property

Expose the tokenizer rules property in the same way as the other core
properties. (The cache resetting is overkill, but consistent with
`from_bytes` for now.)

Add tests and update Tokenizer API docs.

* Update Hungarian punctuation to remove empty string

Update Hungarian punctuation definitions so that `_units` does not match
an empty string.

* Use _load_special_tokenization consistently

Use `_load_special_tokenization()` and have it to handle `None` checks.

* Fix precedence of `token_match` vs. special cases

Remove `token_match` check from `_split_affixes()` so that special cases
have precedence over `token_match`. `token_match` is checked only before
infixes are split.

* Add `make_debug_doc()` to the Tokenizer

Add `make_debug_doc()` to the Tokenizer as a working implementation of
the pseudo-code in the docs.

Add a test (marked as slow) that checks that `nlp.tokenizer()` and
`nlp.tokenizer.make_debug_doc()` return the same non-whitespace tokens
for all languages that have `examples.sentences` that can be imported.

* Update tokenization usage docs

Update pseudo-code and algorithm description to correspond to
`nlp.tokenizer.make_debug_doc()` with example debugging usage.

Add more examples for customizing tokenizers while preserving the
existing defaults.

Minor edits / clarifications.

* Revert "Update Hungarian punctuation to remove empty string"

This reverts commit f0a577f7a5.

* Rework `make_debug_doc()` as `explain()`

Rework `make_debug_doc()` as `explain()`, which returns a list of
`(pattern_string, token_string)` tuples rather than a non-standard
`Doc`. Update docs and tests accordingly, leaving the visualization for
future work.

* Handle cases with bad tokenizer patterns

Detect when tokenizer patterns match empty prefixes and suffixes so that
`explain()` does not hang on bad patterns.

* Remove unused displacy image

* Add tokenizer.explain() to usage docs
2019-11-20 13:07:25 +01:00
Matthew Honnibal
4b123952aa
Add option for improved NER feature extraction (#4671)
* Support option of three NER features

* Expose nr_feature parser model setting

* Give feature tokens better name

* Test nr_feature=3 for NER

* Format
2019-11-19 15:03:14 +01:00
Ines Montani
74b951fe61
Fix xpassing tests (#4657)
* Ignore internal warnings

* Un-xfail passing tests

* Skip instead of xfail
2019-11-16 20:20:53 +01:00
Ines Montani
3bd15055ce
Fix bug in Language.evaluate for components without .pipe (#4662) 2019-11-16 20:20:37 +01:00
Christoph Purschke
433748e867 Fix basic language support for Luxembourgish (by adding punctuation.py) (#4648)
* Update __init__.py

* Create punctuation.py

* Update tokenizer_exceptions.py

* Create questoph.md

* Update questoph.md

* Update test_text.py

* Update test_text.py

* Update test_text.py

* Update test_text.py
2019-11-15 16:16:47 +01:00
adrianeboyd
faaa832518 Generalize handling of tokenizer special cases (#4259)
* Generalize handling of tokenizer special cases

Handle tokenizer special cases more generally by using the Matcher
internally to match special cases after the affix/token_match
tokenization is complete.

Instead of only matching special cases while processing balanced or
nearly balanced prefixes and suffixes, this recognizes special cases in
a wider range of contexts:

* Allows arbitrary numbers of prefixes/affixes around special cases
* Allows special cases separated by infixes

Existing tests/settings that couldn't be preserved as before:

* The emoticon '")' is no longer a supported special case
* The emoticon ':)' in "example:)" is a false positive again

When merged with #4258 (or the relevant cache bugfix), the affix and
token_match properties should be modified to flush and reload all
special cases to use the updated internal tokenization with the Matcher.

* Remove accidentally added test case

* Really remove accidentally added test

* Reload special cases when necessary

Reload special cases when affixes or token_match are modified. Skip
reloading during initialization.

* Update error code number

* Fix offset and whitespace in Matcher special cases

* Fix offset bugs when merging and splitting tokens
* Set final whitespace on final token in inserted special case

* Improve cache flushing in tokenizer

* Separate cache and specials memory (temporarily)
* Flush cache when adding special cases
* Repeated `self._cache = PreshMap()` and `self._specials = PreshMap()`
are necessary due to this bug:
https://github.com/explosion/preshed/issues/21

* Remove reinitialized PreshMaps on cache flush

* Update UD bin scripts

* Update imports for `bin/`
* Add all currently supported languages
* Update subtok merger for new Matcher validation
* Modify blinded check to look at tokens instead of lemmas (for corpora
with tokens but not lemmas like Telugu)

* Use special Matcher only for cases with affixes

* Reinsert specials cache checks during normal tokenization for special
cases as much as possible
  * Additionally include specials cache checks while splitting on infixes
  * Since the special Matcher needs consistent affix-only tokenization
    for the special cases themselves, introduce the argument
    `with_special_cases` in order to do tokenization with or without
    specials cache checks
* After normal tokenization, postprocess with special cases Matcher for
special cases containing affixes

* Replace PhraseMatcher with Aho-Corasick

Replace PhraseMatcher with the Aho-Corasick algorithm over numpy arrays
of the hash values for the relevant attribute. The implementation is
based on FlashText.

The speed should be similar to the previous PhraseMatcher. It is now
possible to easily remove match IDs and matches don't go missing with
large keyword lists / vocabularies.

Fixes #4308.

* Restore support for pickling

* Fix internal keyword add/remove for numpy arrays

* Add test for #4248, clean up test

* Improve efficiency of special cases handling

* Use PhraseMatcher instead of Matcher
* Improve efficiency of merging/splitting special cases in document
  * Process merge/splits in one pass without repeated token shifting
  * Merge in place if no splits

* Update error message number

* Remove UD script modifications

Only used for timing/testing, should be a separate PR

* Remove final traces of UD script modifications

* Update UD bin scripts

* Update imports for `bin/`
* Add all currently supported languages
* Update subtok merger for new Matcher validation
* Modify blinded check to look at tokens instead of lemmas (for corpora
with tokens but not lemmas like Telugu)

* Add missing loop for match ID set in search loop

* Remove cruft in matching loop for partial matches

There was a bit of unnecessary code left over from FlashText in the
matching loop to handle partial token matches, which we don't have with
PhraseMatcher.

* Replace dict trie with MapStruct trie

* Fix how match ID hash is stored/added

* Update fix for match ID vocab

* Switch from map_get_unless_missing to map_get

* Switch from numpy array to Token.get_struct_attr

Access token attributes directly in Doc instead of making a copy of the
relevant values in a numpy array.

Add unsatisfactory warning for hash collision with reserved terminal
hash key. (Ideally it would change the reserved terminal hash and redo
the whole trie, but for now, I'm hoping there won't be collisions.)

* Restructure imports to export find_matches

* Implement full remove()

Remove unnecessary trie paths and free unused maps.

Parallel to Matcher, raise KeyError when attempting to remove a match ID
that has not been added.

* Switch to PhraseMatcher.find_matches

* Switch to local cdef functions for span filtering

* Switch special case reload threshold to variable

Refer to variable instead of hard-coded threshold

* Move more of special case retokenize to cdef nogil

Move as much of the special case retokenization to nogil as possible.

* Rewrap sort as stdsort for OS X

* Rewrap stdsort with specific types

* Switch to qsort

* Fix merge

* Improve cmp functions

* Fix realloc

* Fix realloc again

* Initialize span struct while retokenizing

* Temporarily skip retokenizing

* Revert "Move more of special case retokenize to cdef nogil"

This reverts commit 0b7e52c797.

* Revert "Switch to qsort"

This reverts commit a98d71a942.

* Fix specials check while caching

* Modify URL test with emoticons

The multiple suffix tests result in the emoticon `:>`, which is now
retokenized into one token as a special case after the suffixes are
split off.

* Refactor _apply_special_cases()

* Use cdef ints for span info used in multiple spots

* Modify _filter_special_spans() to prefer earlier

Parallel to #4414, modify _filter_special_spans() so that the earlier
span is preferred for overlapping spans of the same length.

* Replace MatchStruct with Entity

Replace MatchStruct with Entity since the existing Entity struct is
nearly identical.

* Replace Entity with more general SpanC

* Replace MatchStruct with SpanC

* Add error in debug-data if no dev docs are available (see #4575)

* Update azure-pipelines.yml

* Revert "Update azure-pipelines.yml"

This reverts commit ed1060cf59.

* Use latest wasabi

* Reorganise install_requires

* add dframcy to universe.json (#4580)

* Update universe.json [ci skip]

* Fix multiprocessing for as_tuples=True (#4582)

* Fix conllu script (#4579)

* force extensions to avoid clash between example scripts

* fix arg order and default file encoding

* add example config for conllu script

* newline

* move extension definitions to main function

* few more encodings fixes

* Add load_from_docbin example [ci skip]

TODO: upload the file somewhere

* Update README.md

* Add warnings about 3.8 (resolves #4593) [ci skip]

* Fixed typo: Added space between "recognize" and "various" (#4600)

* Fix DocBin.merge() example (#4599)

* Replace function registries with catalogue (#4584)

* Replace functions registries with catalogue

* Update __init__.py

* Fix test

* Revert unrelated flag [ci skip]

* Bugfix/dep matcher issue 4590 (#4601)

* add contributor agreement for prilopes

* add test for issue #4590

* fix on_match params for DependencyMacther (#4590)

* Minor updates to language example sentences (#4608)

* Add punctuation to Spanish example sentences

* Combine multilanguage examples for lang xx

* Add punctuation to nb examples

* Always realloc to a larger size

Avoid potential (unlikely) edge case and cymem error seen in #4604.

* Add error in debug-data if no dev docs are available (see #4575)

* Update debug-data for GoldCorpus / Example

* Ignore None label in misaligned NER data
2019-11-13 21:24:35 +01:00
Sofie Van Landeghem
e48a09df4e Example class for training data (#4543)
* OrigAnnot class instead of gold.orig_annot list of zipped tuples

* from_orig to replace from_annot_tuples

* rename to RawAnnot

* some unit tests for GoldParse creation and internal format

* removing orig_annot and switching to lists instead of tuple

* rewriting tuples to use RawAnnot (+ debug statements, WIP)

* fix pop() changing the data

* small fixes

* pop-append fixes

* return RawAnnot for existing GoldParse to have uniform interface

* clean up imports

* fix merge_sents

* add unit test for 4402 with new structure (not working yet)

* introduce DocAnnot

* typo fixes

* add unit test for merge_sents

* rename from_orig to from_raw

* fixing unit tests

* fix nn parser

* read_annots to produce text, doc_annot pairs

* _make_golds fix

* rename golds_to_gold_annots

* small fixes

* fix encoding

* have golds_to_gold_annots use DocAnnot

* missed a spot

* merge_sents as function in DocAnnot

* allow specifying only part of the token-level annotations

* refactor with Example class + underlying dicts

* pipeline components to work with Example objects (wip)

* input checking

* fix yielding

* fix calls to update

* small fixes

* fix scorer unit test with new format

* fix kwargs order

* fixes for ud and conllu scripts

* fix reading data for conllu script

* add in proper errors (not fixed numbering yet to avoid merge conflicts)

* fixing few more small bugs

* fix EL script
2019-11-11 17:35:27 +01:00
adrianeboyd
91f89f9693 Fix realloc in retokenizer.split() (#4606)
Always realloc to a size larger than `doc.max_length` in
`retokenizer.split()` (or cymem will throw errors).
2019-11-11 16:26:46 +01:00
adrianeboyd
0b9a5f4074 Rework Chinese language initialization and tokenization (#4619)
* Rework Chinese language initialization

* Create a `ChineseTokenizer` class
  * Modify jieba post-processing to handle whitespace correctly
  * Modify non-jieba character tokenization to handle whitespace correctly

* Add a `create_tokenizer()` method to `ChineseDefaults`

* Load lexical attributes

* Update Chinese tag_map for UD v2

* Add very basic Chinese tests

* Test tokenization with and without jieba

* Test `like_num` attribute

* Fix try_jieba_import()

* Fix zh code formatting
2019-11-11 14:23:21 +01:00
Priscilla de Abreu Lopes
39e79fcc86 Bugfix/dep matcher issue 4590 (#4601)
* add contributor agreement for prilopes

* add test for issue #4590

* fix on_match params for DependencyMacther (#4590)
2019-11-07 12:01:06 +01:00
Ines Montani
09cec3e41b
Replace function registries with catalogue (#4584)
* Replace functions registries with catalogue

* Update __init__.py

* Fix test

* Revert unrelated flag [ci skip]
2019-11-07 11:45:22 +01:00