* Add failing test
* Partial fix for issue
This kind of works. The issue with token length mismatches is gone. The
problem is that when you get empty lists of encodings to compare, it
fails because the sizes are not the same, even though they're both zero:
(0, 3) vs (0,). Not sure why that happens...
* Short circuit on empties
* Remove spurious check
The check here isn't needed now the the short circuit is fixed.
* Update spacy/tests/pipeline/test_entity_linker.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Use "eg", not "example"
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Rename to spans_key for consistency
* Implement spans length in debug data
* Implement how span bounds and spans are obtained
In this commit, I implemented how span boundaries (the tokens) around a
given span and spans are obtained. I've put them in the compile_gold()
function so that it's accessible later on. I will do the actual
computation of the span and boundary distinctiveness in the main
function above.
* Compute for p_spans and p_bounds
* Add computation for SD and BD
* Fix mypy issues
* Add weighted average computation
* Fix compile_gold conditional logic
* Add test for frequency distribution computation
* Add tests for kl-divergence computation
* Fix weighted average computation
* Make tables more compact by rounding them
* Add more descriptive checks for spans
* Modularize span computation methods
In this commit, I added the _get_span_characteristics and
_print_span_characteristics functions so that they can be reusable
anywhere.
* Remove unnecessary arguments and make fxs more compact
* Update a few parameter arguments
* Add tests for print_span and get_span methods
* Update API to talk about span characteristics in brief
* Add better reporting of spans_length
* Add test for span length reporting
* Update formatting of span length report
Removed '' to indicate that it's not a string, then
sort the n-grams by their length, not by their frequency.
* Apply suggestions from code review
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Show all frequency distribution when -V
In this commit, I displayed the full frequency distribution of the
span lengths when --verbose is passed. To make things simpler, I
rewrote some of the formatter functions so that I can call them
whenever.
Another notable change is that instead of showing percentages as
Integers, I showed them as floats (max 2-decimal places). I did this
because it looks weird when it displays (0%).
* Update logic on how total is computed
The way the 90% thresholding is computed now is that we keep
adding the percentages until we reach >= 90%. I also updated the wording
and used the term "At least" to denote that >= 90% of your spans have
these distributions.
* Fix display when showing the threshold percentage
* Apply suggestions from code review
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Add better phrasing for span information
* Update spacy/cli/debug_data.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Add minor edits for whitespaces etc.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Pipe name override in config: added check with warning, added removal of name override from config, extended tests.
* Pipoe name override in config: added pytest UserWarning.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Allow assets to be optional in spacy project: draft for optional flag/download_all options.
* Allow assets to be optional in spacy project: added OPTIONAL_DEFAULT reflecting default asset optionality.
* Allow assets to be optional in spacy project: renamed --all to --extra.
* Allow assets to be optional in spacy project: included optional flag in project config test.
* Allow assets to be optional in spacy project: added documentation.
* Allow assets to be optional in spacy project: fixing deprecated --all reference.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Allow assets to be optional in spacy project: fixed project_assets() docstring.
* Allow assets to be optional in spacy project: adjusted wording in justification of optional assets.
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Allow assets to be optional in spacy project: switched to as keyword in project.yml. Updated docs.
* Allow assets to be optional in spacy project: updated comment.
* Allow assets to be optional in spacy project: replacing 'optional' with 'extra' in output.
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Allow assets to be optional in spacy project: replacing 'optional' with 'extra' in docstring..
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Allow assets to be optional in spacy project: replacing 'optional' with 'extra' in test..
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Allow assets to be optional in spacy project: replacing 'optional' with 'extra' in test.
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Allow assets to be optional in spacy project: renamed OPTIONAL_DEFAULT to EXTRA_DEFAULT.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* add v1 and v2 tests for tok2vec architectures
* textcat architectures are not "layers"
* test older textcat architectures
* test older parser architecture
The returned match offsets were only adjusted for `as_spans`, not
generally. Because the `on_match` callbacks are always applied to the
doc, the `Matcher` matches on spans should consistently use the doc
offsets.
* Test for arc levels for identical arcs
Also moves the test in order with the other numbered tests.
* displaCy: filter identical arcs
Avoid increased levels due to identical arcs by first
filtering any identical arcs.
* Sort keys before filtering
Manual entry with keys out of order would previously become
different tuples and therefore not filtered correctly.
Co-authored-by: Joachim Fainberg <joachimfainberg@Joachims-MBP.lan>
* Add basic tests for Tamil (ta)
* Add comment
Remove superfluous condition
* Remove superfluous call to `pipe`
Instantiate new tokenizer for special case
* Added test for overlapping arcs
* Provide distinct levels to overlapping arcs
* Update return type hint for get_levels
* Improved formatting spacy/displacy/render.py
Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Joachim Fainberg <joachimfainberg@Joachims-MacBook-Pro.local>
Co-authored-by: Ines Montani <ines@ines.io>
* Added new convenience cython functions to SpanGroup to avoid unnecessary allocation/deallocation of objects
* Replaced sorting in has_overlap with C++ for efficiency. Also, added a test for has_overlap
* Added a method to efficiently merge SpanGroups
* Added __delitem__, __add__ and __iadd__. Also, allowed to pass span lists to merge function. Replaced extend() body with call to merge
* Renamed merge to concat and added missing things to documentation
* Added operator+ and operator += in the documentation
* Added a test for Doc deallocation
* Update spacy/tokens/span_group.pyx
* Updated SpanGroup tests to use new span list comparison function rather than assert_span_list_equal, eliminating the need to have a separate assert_not_equal fnction
* Fixed typos in SpanGroup documentation
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Minor changes requested by Sofie: rearranged import statements. Added new=3.2.1 tag to SpanGroup.__setitem__ documentation
* SpanGroup: moved repetitive list index check/adjustment in a separate function
* Turn off formatting that hurts readability spacy/tests/doc/test_span_group.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Remove formatting that hurts readability spacy/tests/doc/test_span_group.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Turn off formatting that hurts readability in spacy/tests/doc/test_span_group.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Support more internal methods for SpanGroup
Add support for:
* `__setitem__`
* `__delitem__`
* `__iadd__`: for `SpanGroup` or `Iterable[Span]`
* `__add__`: for `SpanGroup` only
Adapted from #9698 with the scope limited to the magic methods.
* Use v3.3 as new version in docs
* Add new tag to SpanGroup.copy in API docs
* Remove duplicate import
* Apply suggestions from code review
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Remaining suggestions and formatting
Co-authored-by: nrodnova <nrodnova@hotmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Natalia Rodnova <4512370+nrodnova@users.noreply.github.com>
* Alignment: use a simplified ragged type for performance
This introduces the AlignmentArray type, which is a simplified version
of Ragged that performs better on the simple(r) indexing performed for
alignment.
* AlignmentArray: raise an error when using unsupported index
* AlignmentArray: move error messages to Errors
* AlignmentArray: remove simlified ... with simplifications
* AlignmentArray: fix typo that broke a[n:n] indexing
* added failing test case for the issue.
* Fixed typo.
* fixed typo in test.
* added corrected typo word into test_tr_lex_attrs_capitals as param. Test passes. Also tried and confirmed that test is failing after fixing the typo in the test case I wrote. Deleted the test case for typo.
Co-authored-by: Yunus Atahan <yunus.atahan@trmotor.local>
* Add vector deduplication
* Add `Vocab.deduplicate_vectors()`
* Always run deduplication in `spacy init vectors`
* Clean up a few vector-related error messages and docs examples
* Always unique with numpy
* Fix types
* Add edit tree lemmatizer
Co-authored-by: Daniël de Kok <me@danieldk.eu>
* Hide edit tree lemmatizer labels
* Use relative imports
* Switch to single quotes in error message
* Type annotation fixes
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Reformat edit_tree_lemmatizer with black
* EditTreeLemmatizer.predict: take Iterable
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Validate edit trees during deserialization
This change also changes the serialized representation. Rather than
mirroring the deep C structure, we use a simple flat union of the match
and substitution node types.
* Move edit_trees to _edit_tree_internals
* Fix invalid edit tree format error message
* edit_tree_lemmatizer: remove outdated TODO comment
* Rename factory name to trainable_lemmatizer
* Ignore type instead of casting truths to List[Union[Ints1d, Floats2d, List[int], List[str]]] for thinc v8.0.14
* Switch to Tagger.v2
* Add documentation for EditTreeLemmatizer
* docs: Fix 3.2 -> 3.3 somewhere
* trainable_lemmatizer documentation fixes
* docs: EditTreeLemmatizer is in edit_tree_lemmatizer.py
Co-authored-by: Daniël de Kok <me@danieldk.eu>
Co-authored-by: Daniël de Kok <me@github.danieldk.eu>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Add tokenizer option to allow Matcher handling for all rules
Add tokenizer option `with_faster_rules_heuristics` that determines
whether the special cases applied by the internal `Matcher` are filtered
by whether they contain affixes or space. If `True` (default), the rules
are filtered to prioritize speed over rare edge cases. If `False`, all
rules are included in the final `Matcher`-based pass over the doc.
* Reset all caches when reloading special cases
* Revert "Reset all caches when reloading special cases"
This reverts commit 4ef6bd171d.
* Initialize max_length properly
* Add new tag to API docs
* Rename to faster heuristics
* Fix docstring for EntityRenderer
* Add warning in displacy if doc.spans are empty
* Implement parse_spans converter
One notable change here is that the default spans_key is sc, and
it's set by the user through the options.
* Implement SpanRenderer
Here, I implemented a SpanRenderer that looks similar to the
EntityRenderer except for some templates. The spans_key, by default, is
set to sc, but can be configured in the options (see parse_spans). The
way I rendered these spans is per-token, i.e., I first check if each
token (1) belongs to a given span type and (2) a starting token of a
given span type. Once I have this information, I render them into the
markup.
* Fix mypy issues on typing
* Add tests for displacy spans support
* Update colors from RGB to hex
Co-authored-by: Ines Montani <ines@ines.io>
* Remove unnecessary CSS properties
* Add documentation for website
* Remove unnecesasry scripts
* Update wording on the documentation
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Put typing dependency on top of file
* Put back z-index so that spans overlap properly
* Make warning more explicit for spans_key
Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Tagger: use unnormalized probabilities for inference
Using unnormalized softmax avoids use of the relatively expensive exp function,
which can significantly speed up non-transformer models (e.g. I got a speedup
of 27% on a German tagging + parsing pipeline).
* Add spacy.Tagger.v2 with configurable normalization
Normalization of probabilities is disabled by default to improve
performance.
* Update documentation, models, and tests to spacy.Tagger.v2
* Move Tagger.v1 to spacy-legacy
* docs/architectures: run prettier
* Unnormalized softmax is now a Softmax_v2 option
* Require thinc 8.0.14 and spacy-legacy 3.0.9
* Add save_candidates attribute
* Change spancat api
* Add unit test
* reimplement method to produce a list of doc
* Add method to docs
* Add new version tag
* Add intended use to docstring
* prettier formatting
* Add support basic support for lower sorbian.
* Add some test for dsb.
* Update spacy/lang/dsb/examples.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Fix get_matching_ents
Not sure what happened here - the code prior to this commit simply does
not work. It's already covered by entity linker tests, which were
succeeding in the NEL PR, but couldn't possibly succeed on master.
* Fix test
Test was indented inside another test and so doesn't seem to have been
running properly.
* Add support basic support for upper sorbian.
* Add tokenizer exceptions and tests.
* Update spacy/lang/hsb/examples.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Partial fix of entity linker batching
* Add import
* Better name
* Add `use_gold_ents` option, docs
* Change to v2, create stub v1, update docs etc.
* Fix error type
Honestly no idea what the right type to use here is.
ConfigValidationError seems wrong. Maybe a NotImplementedError?
* Make mypy happy
* Add hacky fix for init issue
* Add legacy pipeline entity linker
* Fix references to class name
* Add __init__.py for legacy
* Attempted fix for loss issue
* Remove placeholder V1
* formatting
* slightly more interesting train data
* Handle batches with no usable examples
This adds a test for batches that have docs but not entities, and a
check in the component that detects such cases and skips the update step
as thought the batch were empty.
* Remove todo about data verification
Check for empty data was moved further up so this should be OK now - the
case in question shouldn't be possible.
* Fix gradient calculation
The model doesn't know which entities are not in the kb, so it generates
embeddings for the context of all of them.
However, the loss does know which entities aren't in the kb, and it
ignores them, as there's no sensible gradient.
This has the issue that the gradient will not be calculated for some of
the input embeddings, which causes a dimension mismatch in backprop.
That should have caused a clear error, but with numpyops it was causing
nans to happen, which is another problem that should be addressed
separately.
This commit changes the loss to give a zero gradient for entities not in
the kb.
* add failing test for v1 EL legacy architecture
* Add nasty but simple working check for legacy arch
* Clarify why init hack works the way it does
* Clarify use_gold_ents use case
* Fix use gold ents related handling
* Add tests for no gold ents and fix other tests
* Use aligned ents function (not working)
This doesn't actually work because the "aligned" ents are gold-only. But
if I have a different function that returns the intersection, *then*
this will work as desired.
* Use proper matching ent check
This changes the process when gold ents are not used so that the
intersection of ents in the pred and gold is used.
* Move get_matching_ents to Example
* Use model attribute to check for legacy arch
* Rename flag
* bump spacy-legacy to lower 3.0.9
Co-authored-by: svlandeg <svlandeg@github.com>
* fixing argument order for rehearse
* rehearse test for ner and tagger
* rehearse bugfix
* added test for parser
* test for multilabel textcat
* rehearse fix
* remove debug line
* Update spacy/tests/training/test_rehearse.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update spacy/tests/training/test_rehearse.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Kádár Ákos <akos@onyx.uvt.nl>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Make core projectivization methods cdef nogil
While profiling the parser, I noticed that relatively a lot of time is
spent in projectivization. This change rewrites the functions in the
core loops as cdef nogil for efficiency.
In C++-land, we use vector in place of Python lists and absent heads
are represented as -1 in place of None.
* _heads_to_c: add assertion
Validation should be performed by the caller, but this assertion ensures that
we are not reading/writing out of bounds with incorrect input.
* Fix NER check in CoNLL-U converter
Leave ents unset if no NER annotation is found in the MISC column.
* Revert to global rather than per-sentence NER check
* Update spacy/training/converters/conllu_to_docs.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Add whitespace augmenter that inserts a single whitespace token into a
doc containing annotation used in core trained pipelines.
Add a combined augmenter that handles lowercasing, orth variants and
whitespace augmentation.
* remove duplicate line
* add sent start/end token attributes to the docs
* let has_annotation work with IS_SENT_END
* elif instead of if
* add has_annotation test for sent attributes
* fix typo
* remove duplicate is_sent_start entry in docs
* Fix debug data check for ents that cross sents
* Use aligned sent starts to have the same indices for the NER and sent
start annotation
* Add a temporary, insufficient hack for the case where a
sentence-initial reference token is split into multiple tokens in the
predicted doc, since `Example.get_aligned("SENT_START")` currently
aligns `True` to all the split tokens.
* Improve test example
* Use Example.get_aligned_sent_starts
* Add test for crossing entity
* Auto-format code with black
* add black requirement to dev dependencies and pin to 22.x
* ignore black dependency for comparison with setup.cfg
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
Co-authored-by: svlandeg <svlandeg@github.com>
Remove exception for whitespace tokens in `Example.get_aligned` so that
annotation on whitespace tokens is aligned in the same way as for
non-whitespace tokens.
* Fix infix as prefix in Tokenizer.explain
Update `Tokenizer.explain` to align with the `Tokenizer` algorithm:
* skip infix matches that are prefixes in the current substring
* Update tokenizer pseudocode in docs
* added iob to int
* added tests
* added iob strings
* added error
* blacked attrs
* Update spacy/tests/lang/test_attrs.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spacy/attrs.pyx
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* added iob strings as global
* minor refinement with iob
* removed iob strings from token
* changed to uppercase
* cleaned and went back to master version
* imported iob from attrs
* Update and format errors
* Support and test both str and int ENT_IOB key
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* added new field
* added exception for IOb strings
* minor refinement to schema
* removed field
* fixed typo
* imported numeriacla val
* changed the code bit
* cosmetics
* added test for matcher
* set ents of moc docs
* added invalid pattern
* minor update to documentation
* blacked matcher
* added pattern validation
* add IOB vals to schema
* changed into test
* mypy compat
* cleaned left over
* added compat import
* changed type
* added compat import
* changed literal a bit
* went back to old
* made explicit type
* Update spacy/schemas.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spacy/schemas.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spacy/schemas.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Determine labels by factory name in debug data
For all components, return labels for all components with the
corresponding factory name rather than for only the default name.
For `spancat`, return labels as a dict keyed by `spans_key`.
* Refactor for typing
* Add test
* Use assert instead of cast, removed unneeded arg
* Mark test as slow
* Use Vectors.shape rather than Vectors.data.shape
* Use Vectors.size rather than Vectors.data.size
* Add Vectors.to_ops to move data between different ops
* Add documentation for Vector.to_ops
* Corrected Span's __richcmp__ implementation to take end, label and kb_id in consideration
* Updated test
* Updated test
* Removed formatting from a test for readability sake
* Use same tuples for all comparisons
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Edited Slovenian stop words list (#9707)
* Noun chunks for Italian (#9662)
* added it vocab
* copied portuguese
* added possessive determiner
* added conjed Nps
* added nmoded Nps
* test misc
* more examples
* fixed typo
* fixed parenth
* fixed comma
* comma fix
* added syntax iters
* fix some index problems
* fixed index
* corrected heads for test case
* fixed tets case
* fixed determiner gender
* cleaned left over
* added example with apostophe
* French NP review (#9667)
* adapted from pt
* added basic tests
* added fr vocab
* fixed noun chunks
* more examples
* typo fix
* changed naming
* changed the naming
* typo fix
* Add Japanese kana characters to default exceptions (fix#9693) (#9742)
This includes the main kana, or phonetic characters, used in Japanese.
There are some supplemental kana blocks in Unicode outside the BMP that
could also be included, but because their actual use is rare I omitted
them for now, but maybe they should be added. The omitted blocks are:
- Kana Supplement
- Kana Extended (A and B)
- Small Kana Extension
* Remove NER words from stop words in Norwegian (#9820)
Default stop words in Norwegian bokmål (nb) in Spacy contain important entities, e.g. France, Germany, Russia, Sweden and USA, police district, important units of time, e.g. months and days of the week, and organisations.
Nobody expects their presence among the default stop words. There is a danger of users complying with the general recommendation of filtering out stop words, while being unaware of filtering out important entities from their data.
See explanation in https://github.com/explosion/spaCy/issues/3052#issuecomment-986756711 and comment https://github.com/explosion/spaCy/issues/3052#issuecomment-986951831
* Bump sudachipy version
* Update sudachipy versions
* Bump versions
Bumping to the most recent dictionary just to keep thing current.
Bumping sudachipy to 5.2 because older versions don't support recent
dictionaries.
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Richard Hudson <richard@explosion.ai>
Co-authored-by: Duygu Altinok <duygu@explosion.ai>
Co-authored-by: Haakon Meland Eriksen <haakon.eriksen@far.no>
* Span/SpanGroup: wrap SpanC in shared_ptr
When a Span that was retrieved from a SpanGroup was modified, these
changes were not reflected in the SpanGroup because the underlying
SpanC struct was copied.
This change applies the solution proposed by @nrodnova, to wrap SpanC in
a shared_ptr. This makes a SpanGroup and Spans derived from it share the
same SpanC. So, changes made through a Span are visible in the SpanGroup
as well.
Fixes#9556
* Test that a SpanGroup is modified through its Spans
* SpanGroup.push_back: remove nogil
Modifying std::vector is not thread-safe.
* C++ >= 11 does not allow const T in vector<T>
* Add Span.span_c as a shorthand for Span.c.get
Since this method is cdef'ed, it is only visible from Cython, so we
avoid using raw pointers in Python
Replace existing uses of span.c.get() to use this new method.
* Fix formatting
* Style fix: pointer types
* SpanGroup.to_bytes: reduce number of shared_ptr::get calls
* Mark SpanGroup modification test with issue
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Fix Scorer.score_cats for missing labels
* Add test case for Scorer.score_cats missing labels
* semantic nitpick
* black formatting
* adjust test to give different results depending on multi_label setting
* fix loss function according to whether or not missing values are supported
* add note to docs
* small fixes
* make mypy happy
* Update spacy/pipeline/textcat.py
Co-authored-by: Florian Cäsar <florian.caesar@pm.me>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <svlandeg@github.com>
* added ruler coe
* added error for none existing pattern
* changed error to warning
* changed error to warning
* added basic tests
* fixed place
* added test files
* went back to error
* went back to pattern error
* minor change to docs
* changed style
* changed doc
* changed error slightly
* added remove to phrasem api
* error key already existed
* phrase matcher match code to api
* blacked tests
* moved comments before expr
* corrected error no
* Update website/docs/api/entityruler.md
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update website/docs/api/entityruler.md
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Added sents property to Span class that returns a generator of sentences the Span belongs to
* Added description to Span.sents property
* Update test_span to clarify the difference between span.sent and span.sents
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update spacy/tests/doc/test_span.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Fix documentation typos in spacy/tokens/span.pyx
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update Span.sents doc string in spacy/tokens/span.pyx
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Parametrized test_span_spans
* Corrected Span.sents to check for span-level hook first. Also, made Span.sent respect doc-level sents hook if no span-level hook is provided
* Corrected Span ocumentation copy/paste issue
* Put back accidentally deleted lines
* Fixed formatting in span.pyx
* Moved check for SENT_START annotation after user hooks in Span.sents
* add version where the property was introduced
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Migrate regressions 1-1000
* Move serialize test to correct file
* Remove tests that won't work in v3
* Migrate regressions 1000-1500
Removed regression test 1250 because v3 doesn't support the old LEX
scheme anymore.
* Add missing imports in serializer tests
* Migrate tests 1500-2000
* Migrate regressions from 2000-2500
* Migrate regressions from 2501-3000
* Migrate regressions from 3000-3501
* Migrate regressions from 3501-4000
* Migrate regressions from 4001-4500
* Migrate regressions from 4501-5000
* Migrate regressions from 5001-5501
* Migrate regressions from 5501 to 7000
* Migrate regressions from 7001 to 8000
* Migrate remaining regression tests
* Fixing missing imports
* Update docs with new system [ci skip]
* Update CONTRIBUTING.md
- Fix formatting
- Update wording
* Remove lemmatizer tests in el lang
* Move a few tests into the general tokenizer
* Separate Doc and DocBin tests
* Add support for kb_id to be displayed via displacy.serve. The current support is only limited to the manual option in displacy.render
* Commit to check pre-commit hooks are run.
* Update spacy/displacy/__init__.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Changes as per suggestions on the PR.
* Update website/docs/api/top-level.md
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update website/docs/api/top-level.md
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* tag option as new from 3.2.1 onwards
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
* Use internal names for factories
If a component factory is registered like `@French.factory(...)` instead
of `@Language.factory(...)`, the name in the factories registry will be
prefixed with the language code. However in the nlp.config object the
factory will be listed without the language code. The `add_pipe` code
has fallback logic to handle this, but packaging code and the registry
itself don't.
This change makes it so that the factory name in nlp.config is the
language-specific form. It's not clear if this will break anything else,
but it does seem to fix the inconsistency and resolve the specific user
issue that brought this to our attention.
* Change approach to use fallback in package lookup
This adds fallback logic to the package lookup, so it doesn't have to
touch the way the config is built. It seems to fix the tests too.
* Remove unecessary line
* Add test
Thsi also adds an assert that seems to have been forgotten.
* Added Slovak
* Added Slovenian tests
* Added Estonian tests
* Added Croatian tests
* Added Latvian tests
* Added Icelandic tests
* Added Afrikaans tests
* Added language-independent tests
* Added Kannada tests
* Tidied up
* Added Albanian tests
* Formatted with black
* Added failing tests for anomalies
* Update spacy/tests/lang/af/test_text.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Added context to failing Estonian tokenizer test
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Added context to failing Croatian tokenizer test
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Added context to failing Icelandic tokenizer test
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Added context to failing Latvian tokenizer test
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Added context to failing Slovak tokenizer test
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Added context to failing Slovenian tokenizer test
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Added ENT_ID and ENT_KB_ID into the list of the attributes that Matcher matches on
* Added ENT_ID and ENT_KB_ID to TEST_PATTERNS in test_pattern_validation.py. Disabled tests that I added before
* Update website/docs/api/matcher.md
* Format
* Remove skipped tests
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* added error string
* added serialization test
* added more to if statements
* wrote file to tempdir
* added tempdir
* changed parameter a bit
* Update spacy/tests/pipeline/test_entity_ruler.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* make nlp.pipe() return None docs when no exceptions are (re-)raised during error handling
* Remove changes other than as_tuples test
* Only check warning count for one process
* Fix types
* Format
Co-authored-by: Xi Bai <xi.bai.ed@gmail.com>
* Add micro PRF for morph scoring
For pipelines where morph features are added by more than one component
and a reference training corpus may not contain all features, a micro
PRF score is more flexible than a simple accuracy score. An example is
the reading and inflection features added by the Japanese tokenizer.
* Use `morph_micro_f` as the default morph score for Japanese
morphologizers.
* Update docstring
* Fix typo in docstring
* Update Scorer API docs
* Fix results type
* Organize score list by attribute prefix
* Add support for fasttext-bloom hash-only vectors
Overview:
* Extend `Vectors` to have two modes: `default` and `ngram`
* `default` is the default mode and equivalent to the current
`Vectors`
* `ngram` supports the hash-only ngram tables from `fasttext-bloom`
* Extend `spacy.StaticVectors.v2` to handle both modes with no changes
for `default` vectors
* Extend `spacy init vectors` to support ngram tables
The `ngram` mode **only** supports vector tables produced by this
fork of fastText, which adds an option to represent all vectors using
only the ngram buckets table and which uses the exact same ngram
generation algorithm and hash function (`MurmurHash3_x64_128`).
`fasttext-bloom` produces an additional `.hashvec` table, which can be
loaded by `spacy init vectors --fasttext-bloom-vectors`.
https://github.com/adrianeboyd/fastText/tree/feature/bloom
Implementation details:
* `Vectors` now includes the `StringStore` as `Vectors.strings` so that
the API can stay consistent for both `default` (which can look up from
`str` or `int`) and `ngram` (which requires `str` to calculate the
ngrams).
* In ngram mode `Vectors` uses a default `Vectors` object as a cache
since the ngram vectors lookups are relatively expensive.
* The default cache size is the same size as the provided ngram vector
table.
* Once the cache is full, no more entries are added. The user is
responsible for managing the cache in cases where the initial
documents are not representative of the texts.
* The cache can be resized by setting `Vectors.ngram_cache_size` or
cleared with `vectors._ngram_cache.clear()`.
* The API ends up a bit split between methods for `default` and for
`ngram`, so functions that only make sense for `default` or `ngram`
include warnings with custom messages suggesting alternatives where
possible.
* `Vocab.vectors` becomes a property so that the string stores can be
synced when assigning vectors to a vocab.
* `Vectors` serializes its own config settings as `vectors.cfg`.
* The `Vectors` serialization methods have added support for `exclude`
so that the `Vocab` can exclude the `Vectors` strings while serializing.
Removed:
* The `minn` and `maxn` options and related code from
`Vocab.get_vector`, which does not work in a meaningful way for default
vector tables.
* The unused `GlobalRegistry` in `Vectors`.
* Refactor to use reduce_mean
Refactor to use reduce_mean and remove the ngram vectors cache.
* Rename to floret
* Rename to floret in error messages
* Use --vectors-mode in CLI, vector init
* Fix vectors mode in init
* Remove unused var
* Minor API and docstrings adjustments
* Rename `--vectors-mode` to `--mode` in `init vectors` CLI
* Rename `Vectors.get_floret_vectors` to `Vectors.get_batch` and support
both modes.
* Minor updates to Vectors docstrings.
* Update API docs for Vectors and init vectors CLI
* Update types for StaticVectors
* Ignore prefix in suffix matches
Ignore the currently matched prefix when looking for suffix matches in
the tokenizer. Otherwise a lookbehind in the suffix pattern may match
incorrectly due the presence of the prefix in the token string.
* Move °[cfkCFK]. to a tokenizer exception
* Adjust exceptions for same tokenization as v3.1
* Also update test accordingly
* Continue to split . after °CFK if ° is not a prefix
* Exclude new ° exceptions for pl
* Switch back to default tokenization of "° C ."
* Revert "Exclude new ° exceptions for pl"
This reverts commit 952013a5b4.
* Add exceptions for °C for hu
* Raise an error when multiprocessing is used on a GPU
As reported in #5507, a confusing exception is thrown when
multiprocessing is used with a GPU model and the `fork` multiprocessing
start method:
cupy.cuda.runtime.CUDARuntimeError: cudaErrorInitializationError: initialization error
This change checks whether one of the models uses the GPU when
multiprocessing is used. If so, raise a friendly error message.
Even though multiprocessing can work on a GPU with the `spawn` method,
it quickly runs the GPU out-of-memory on real-world data. Also,
multiprocessing on a single GPU typically does not provide large
performance gains.
* Move GPU multiprocessing check to Language.pipe
* Warn rather than error when using multiprocessing with GPU models
* Improve GPU multiprocessing warning message.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Reduce API assumptions
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spacy/language.py
* Update spacy/language.py
* Test that warning is thrown with GPU + multiprocessing
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* add custom protocols in spacy.ty
* add a test for the new types in spacy.ty
* import Example when type checking
* some type fixes
* put Protocol in compat
* revert update check back to hasattr
* runtime_checkable in compat as well
* 🚨 Ignore all existing Mypy errors
* 🏗 Add Mypy check to CI
* Add types-mock and types-requests as dev requirements
* Add additional type ignore directives
* Add types packages to dev-only list in reqs test
* Add types-dataclasses for python 3.6
* Add ignore to pretrain
* 🏷 Improve type annotation on `run_command` helper
The `run_command` helper previously declared that it returned an
`Optional[subprocess.CompletedProcess]`, but it isn't actually possible
for the function to return `None`. These changes modify the type
annotation of the `run_command` helper and remove all now-unnecessary
`# type: ignore` directives.
* 🔧 Allow variable type redefinition in limited contexts
These changes modify how Mypy is configured to allow variables to have
their type automatically redefined under certain conditions. The Mypy
documentation contains the following example:
```python
def process(items: List[str]) -> None:
# 'items' has type List[str]
items = [item.split() for item in items]
# 'items' now has type List[List[str]]
...
```
This configuration change is especially helpful in reducing the number
of `# type: ignore` directives needed to handle the common pattern of:
* Accepting a filepath as a string
* Overwriting the variable using `filepath = ensure_path(filepath)`
These changes enable redefinition and remove all `# type: ignore`
directives rendered redundant by this change.
* 🏷 Add type annotation to converters mapping
* 🚨 Fix Mypy error in convert CLI argument verification
* 🏷 Improve type annotation on `resolve_dot_names` helper
* 🏷 Add type annotations for `Vocab` attributes `strings` and `vectors`
* 🏷 Add type annotations for more `Vocab` attributes
* 🏷 Add loose type annotation for gold data compilation
* 🏷 Improve `_format_labels` type annotation
* 🏷 Fix `get_lang_class` type annotation
* 🏷 Loosen return type of `Language.evaluate`
* 🏷 Don't accept `Scorer` in `handle_scores_per_type`
* 🏷 Add `string_to_list` overloads
* 🏷 Fix non-Optional command-line options
* 🙈 Ignore redefinition of `wandb_logger` in `loggers.py`
* ➕ Install `typing_extensions` in Python 3.8+
The `typing_extensions` package states that it should be used when
"writing code that must be compatible with multiple Python versions".
Since SpaCy needs to support multiple Python versions, it should be used
when newer `typing` module members are required. One example of this is
`Literal`, which is available starting with Python 3.8.
Previously SpaCy tried to import `Literal` from `typing`, falling back
to `typing_extensions` if the import failed. However, Mypy doesn't seem
to be able to understand what `Literal` means when the initial import
means. Therefore, these changes modify how `compat` imports `Literal` by
always importing it from `typing_extensions`.
These changes also modify how `typing_extensions` is installed, so that
it is a requirement for all Python versions, including those greater
than or equal to 3.8.
* 🏷 Improve type annotation for `Language.pipe`
These changes add a missing overload variant to the type signature of
`Language.pipe`. Additionally, the type signature is enhanced to allow
type checkers to differentiate between the two overload variants based
on the `as_tuple` parameter.
Fixes#8772
* ➖ Don't install `typing-extensions` in Python 3.8+
After more detailed analysis of how to implement Python version-specific
type annotations using SpaCy, it has been determined that by branching
on a comparison against `sys.version_info` can be statically analyzed by
Mypy well enough to enable us to conditionally use
`typing_extensions.Literal`. This means that we no longer need to
install `typing_extensions` for Python versions greater than or equal to
3.8! 🎉
These changes revert previous changes installing `typing-extensions`
regardless of Python version and modify how we import the `Literal` type
to ensure that Mypy treats it properly.
* resolve mypy errors for Strict pydantic types
* refactor code to avoid missing return statement
* fix types of convert CLI command
* avoid list-set confustion in debug_data
* fix typo and formatting
* small fixes to avoid type ignores
* fix types in profile CLI command and make it more efficient
* type fixes in projects CLI
* put one ignore back
* type fixes for render
* fix render types - the sequel
* fix BaseDefault in language definitions
* fix type of noun_chunks iterator - yields tuple instead of span
* fix types in language-specific modules
* 🏷 Expand accepted inputs of `get_string_id`
`get_string_id` accepts either a string (in which case it returns its
ID) or an ID (in which case it immediately returns the ID). These
changes extend the type annotation of `get_string_id` to indicate that
it can accept either strings or IDs.
* 🏷 Handle override types in `combine_score_weights`
The `combine_score_weights` function allows users to pass an `overrides`
mapping to override data extracted from the `weights` argument. Since it
allows `Optional` dictionary values, the return value may also include
`Optional` dictionary values.
These changes update the type annotations for `combine_score_weights` to
reflect this fact.
* 🏷 Fix tokenizer serialization method signatures in `DummyTokenizer`
* 🏷 Fix redefinition of `wandb_logger`
These changes fix the redefinition of `wandb_logger` by giving a
separate name to each `WandbLogger` version. For
backwards-compatibility, `spacy.train` still exports `wandb_logger_v3`
as `wandb_logger` for now.
* more fixes for typing in language
* type fixes in model definitions
* 🏷 Annotate `_RandomWords.probs` as `NDArray`
* 🏷 Annotate `tok2vec` layers to help Mypy
* 🐛 Fix `_RandomWords.probs` type annotations for Python 3.6
Also remove an import that I forgot to move to the top of the module 😅
* more fixes for matchers and other pipeline components
* quick fix for entity linker
* fixing types for spancat, textcat, etc
* bugfix for tok2vec
* type annotations for scorer
* add runtime_checkable for Protocol
* type and import fixes in tests
* mypy fixes for training utilities
* few fixes in util
* fix import
* 🐵 Remove unused `# type: ignore` directives
* 🏷 Annotate `Language._components`
* 🏷 Annotate `spacy.pipeline.Pipe`
* add doc as property to span.pyi
* small fixes and cleanup
* explicit type annotations instead of via comment
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: svlandeg <svlandeg@github.com>
* Add test for case where parser overwrite annotations
* Move test to its own file
Also add note about how other tokens modify results.
* Fix xfail decorator
* Fix inconsistency
This makes the failing test pass, so that behavior is consistent whether
patterns are added in one call or two.
The issue is that the hash for patterns depended on the index of the
pattern in the list of current patterns, not the list of total patterns,
so a second call would get identical match ids.
* Add illustrative test case
* Add failing test for remove case
Patterns are not removed from the internal matcher on calls to remove,
which causes spurious weird matches (or misses).
* Fix removal issue
Remove patterns from the internal matcher.
* Check that the single add call also gets no matches
* use language-matching to allow language code aliases
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* link to "IETF language tags" in docs
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* Make requirements consistent
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* change "two-letter language ID" to "IETF language tag" in language docs
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* use langcodes 3.2 and handle language-tag errors better
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* all unknown language codes are ImportErrors
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
Co-authored-by: Elia Robyn Speer <elia@explosion.ai>
* Use morph for extra Japanese tokenizer info
Previously Japanese tokenizer info that didn't correspond to Token
fields was put in user data. Since spaCy core should avoid touching user
data, this moves most information to the Token.morph attribute. It also
adds the normalized form, which wasn't exposed before.
The subtokens, which are a list of full tokens, are still added to user
data, except with the default tokenizer granualarity. With the default
tokenizer settings the subtokens are all None, so in this case the user
data is simply not set.
* Update tests
Also adds a new test for norm data.
* Update docs
* Add Japanese morphologizer factory
Set the default to `extend=True` so that the morphologizer does not
clobber the values set by the tokenizer.
* Use the norm_ field for normalized forms
Before this commit, normalized forms were put in the "norm" field in the
morph attributes. I am not sure why I did that instead of using the
token morph, I think I just forgot about it.
* Skip test if sudachipy is not installed
* Fix import
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Add overwrite settings for more components
For pipeline components where it's relevant and not already implemented,
add an explicit `overwrite` setting that controls whether
`set_annotations` overwrites existing annotation.
For the `morphologizer`, add an additional setting `extend`, which
controls whether the existing features are preserved.
* +overwrite, +extend: overwrite values of existing features, add any new
features
* +overwrite, -extend: overwrite completely, removing any existing
features
* -overwrite, +extend: keep values of existing features, add any new
features
* -overwrite, -extend: do not modify the existing value if set
In all cases an unset value will be set by `set_annotations`.
Preserve current overwrite defaults:
* True: morphologizer, entity linker
* False: tagger, sentencizer, senter
* Add backwards compat overwrite settings
* Put empty line back
Removed by accident in last commit
* Set backwards-compatible defaults in __init__
Because the `TrainablePipe` serialization methods update `cfg`, there's
no straightforward way to detect whether models serialized with a
previous version are missing the overwrite settings.
It would be possible in the sentencizer due to its separate
serialization methods, however to keep the changes parallel, this also
sets the default in `__init__`.
* Remove traces
Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>
* Update Makefile
For more recent python version
* updated for bsc changes
New tokenization changes
* Update test_text.py
* updating tests and requirements
* changed failed test in test/lang/ca
changed failed test in test/lang/ca
* Update .gitignore
deleted stashed changes line
* back to python 3.6 and remove transformer requirements
As per request
* Update test_exception.py
Change the test
* Update test_exception.py
Remove test print
* Update Makefile
For more recent python version
* updated for bsc changes
New tokenization changes
* updating tests and requirements
* Update requirements.txt
Removed spacy-transfromers from requirements
* Update test_exception.py
Added final punctuation to ensure consistency
* Update Makefile
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Format
* Update test to check all tokens
Co-authored-by: cayorodriguez <crodriguezp@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Accept Doc input in pipelines
Allow `Doc` input to `Language.__call__` and `Language.pipe`, which
skips `Language.make_doc` and passes the doc directly to the pipeline.
* ensure_doc helper function
* avoid running multiple processes on GPU
* Update spacy/tests/test_language.py
Co-authored-by: svlandeg <svlandeg@github.com>
* Validate pos values when creating Doc
* Add clear error when setting invalid pos
This also changes the error language slightly.
* Fix variable name
* Update spacy/tokens/doc.pyx
* Test that setting invalid pos raises an error
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
