Commit Graph

355 Commits

Author SHA1 Message Date
Matthew Honnibal
3139b020b5 Fix train script 2018-11-30 22:17:08 +00:00
Matthew Honnibal
4aa1002546 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2018-11-30 20:58:51 +00:00
Matthew Honnibal
6bd1cc57ee Increase length limit for pretrain 2018-11-30 20:58:18 +00:00
Ines Montani
37c7c85a86 💫 New JSON helpers, training data internals & CLI rewrite (#2932)
* Support nowrap setting in util.prints

* Tidy up and fix whitespace

* Simplify script and use read_jsonl helper

* Add JSON schemas (see #2928)

* Deprecate Doc.print_tree

Will be replaced with Doc.to_json, which will produce a unified format

* Add Doc.to_json() method (see #2928)

Converts Doc objects to JSON using the same unified format as the training data. Method also supports serializing selected custom attributes in the doc._. space.

* Remove outdated test

* Add write_json and write_jsonl helpers

* WIP: Update spacy train

* Tidy up spacy train

* WIP: Use wasabi for formatting

* Add GoldParse helpers for JSON format

* WIP: add debug-data command

* Fix typo

* Add missing import

* Update wasabi pin

* Add missing import

* 💫 Refactor CLI (#2943)

To be merged into #2932.

## Description
- [x] refactor CLI To use [`wasabi`](https://github.com/ines/wasabi)
- [x] use [`black`](https://github.com/ambv/black) for auto-formatting
- [x] add `flake8` config
- [x] move all messy UD-related scripts to `cli.ud`
- [x] make converters function that take the opened file and return the converted data (instead of having them handle the IO)

### Types of change
enhancement

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Update wasabi pin

* Delete old test

* Update errors

* Fix typo

* Tidy up and format remaining code

* Fix formatting

* Improve formatting of messages

* Auto-format remaining code

* Add tok2vec stuff to spacy.train

* Fix typo

* Update wasabi pin

* Fix path checks for when train() is called as function

* Reformat and tidy up pretrain script

* Update argument annotations

* Raise error if model language doesn't match lang

* Document new train command
2018-11-30 20:16:14 +01:00
Ines Montani
d33953037e
💫 Port master changes over to develop (#2979)
* Create aryaprabhudesai.md (#2681)

* Update _install.jade (#2688)

Typo fix: "models" -> "model"

* Add FAC to spacy.explain (resolves #2706)

* Remove docstrings for deprecated arguments (see #2703)

* When calling getoption() in conftest.py, pass a default option (#2709)

* When calling getoption() in conftest.py, pass a default option

This is necessary to allow testing an installed spacy by running:

  pytest --pyargs spacy

* Add contributor agreement

* update bengali token rules for hyphen and digits (#2731)

* Less norm computations in token similarity (#2730)

* Less norm computations in token similarity

* Contributor agreement

* Remove ')' for clarity (#2737)

Sorry, don't mean to be nitpicky, I just noticed this when going through the CLI and thought it was a quick fix. That said, if this was intention than please let me know.

* added contributor agreement for mbkupfer (#2738)

* Basic support for Telugu language (#2751)

* Lex _attrs for polish language (#2750)

* Signed spaCy contributor agreement

* Added polish version of english lex_attrs

* Introduces a bulk merge function, in order to solve issue #653 (#2696)

* Fix comment

* Introduce bulk merge to increase performance on many span merges

* Sign contributor agreement

* Implement pull request suggestions

* Describe converters more explicitly (see #2643)

* Add multi-threading note to Language.pipe (resolves #2582) [ci skip]

* Fix formatting

* Fix dependency scheme docs (closes #2705) [ci skip]

* Don't set stop word in example (closes #2657) [ci skip]

* Add words to portuguese language _num_words (#2759)

* Add words to portuguese language _num_words

* Add words to portuguese language _num_words

* Update Indonesian model (#2752)

* adding e-KTP in tokenizer exceptions list

* add exception token

* removing lines with containing space as it won't matter since we use .split() method in the end, added new tokens in exception

* add tokenizer exceptions list

* combining base_norms with norm_exceptions

* adding norm_exception

* fix double key in lemmatizer

* remove unused import on punctuation.py

* reformat stop_words to reduce number of lines, improve readibility

* updating tokenizer exception

* implement is_currency for lang/id

* adding orth_first_upper in tokenizer_exceptions

* update the norm_exception list

* remove bunch of abbreviations

* adding contributors file

* Fixed spaCy+Keras example (#2763)

* bug fixes in keras example

* created contributor agreement

* Adding French hyphenated first name (#2786)

* Fix typo (closes #2784)

* Fix typo (#2795) [ci skip]

Fixed typo on line 6 "regcognizer --> recognizer"

* Adding basic support for Sinhala language. (#2788)

* adding Sinhala language package, stop words, examples and lex_attrs.

* Adding contributor agreement

* Updating contributor agreement

* Also include lowercase norm exceptions

* Fix error (#2802)

* Fix error
ValueError: cannot resize an array that references or is referenced
by another array in this way.  Use the resize function

* added spaCy Contributor Agreement

* Add charlax's contributor agreement (#2805)

* agreement of contributor, may I introduce a tiny pl languge contribution (#2799)

* Contributors agreement

* Contributors agreement

* Contributors agreement

* Add jupyter=True to displacy.render in documentation (#2806)

* Revert "Also include lowercase norm exceptions"

This reverts commit 70f4e8adf3.

* Remove deprecated encoding argument to msgpack

* Set up dependency tree pattern matching skeleton (#2732)

* Fix bug when too many entity types. Fixes #2800

* Fix Python 2 test failure

* Require older msgpack-numpy

* Restore encoding arg on msgpack-numpy

* Try to fix version pin for msgpack-numpy

* Update Portuguese Language (#2790)

* Add words to portuguese language _num_words

* Add words to portuguese language _num_words

* Portuguese - Add/remove stopwords, fix tokenizer, add currency symbols

* Extended punctuation and norm_exceptions in the Portuguese language

* Correct error in spacy universe docs concerning spacy-lookup (#2814)

* Update Keras Example for (Parikh et al, 2016) implementation  (#2803)

* bug fixes in keras example

* created contributor agreement

* baseline for Parikh model

* initial version of parikh 2016 implemented

* tested asymmetric models

* fixed grevious error in normalization

* use standard SNLI test file

* begin to rework parikh example

* initial version of running example

* start to document the new version

* start to document the new version

* Update Decompositional Attention.ipynb

* fixed calls to similarity

* updated the README

* import sys package duh

* simplified indexing on mapping word to IDs

* stupid python indent error

* added code from https://github.com/tensorflow/tensorflow/issues/3388 for tf bug workaround

* Fix typo (closes #2815) [ci skip]

* Update regex version dependency

* Set version to 2.0.13.dev3

* Skip seemingly problematic test

* Remove problematic test

* Try previous version of regex

* Revert "Remove problematic test"

This reverts commit bdebbef455.

* Unskip test

* Try older version of regex

* 💫 Update training examples and use minibatching (#2830)

<!--- Provide a general summary of your changes in the title. -->

## Description
Update the training examples in `/examples/training` to show usage of spaCy's `minibatch` and `compounding` helpers ([see here](https://spacy.io/usage/training#tips-batch-size) for details). The lack of batching in the examples has caused some confusion in the past, especially for beginners who would copy-paste the examples, update them with large training sets and experienced slow and unsatisfying results.

### Types of change
enhancements

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Visual C++ link updated (#2842) (closes #2841) [ci skip]

* New landing page

* Add contribution agreement

* Correcting lang/ru/examples.py (#2845)

* Correct some grammatical inaccuracies in lang\ru\examples.py; filled Contributor Agreement

* Correct some grammatical inaccuracies in lang\ru\examples.py

* Move contributor agreement to separate file

* Set version to 2.0.13.dev4

* Add Persian(Farsi) language support (#2797)

* Also include lowercase norm exceptions

* Remove in favour of https://github.com/explosion/spaCy/graphs/contributors

* Rule-based French Lemmatizer (#2818)

<!--- Provide a general summary of your changes in the title. -->

## Description
<!--- Use this section to describe your changes. If your changes required
testing, include information about the testing environment and the tests you
ran. If your test fixes a bug reported in an issue, don't forget to include the
issue number. If your PR is still a work in progress, that's totally fine – just
include a note to let us know. -->

Add a rule-based French Lemmatizer following the english one and the excellent PR for [greek language optimizations](https://github.com/explosion/spaCy/pull/2558) to adapt the Lemmatizer class.

### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->

- Lemma dictionary used can be found [here](http://infolingu.univ-mlv.fr/DonneesLinguistiques/Dictionnaires/telechargement.html), I used the XML version.
- Add several files containing exhaustive list of words for each part of speech 
- Add some lemma rules
- Add POS that are not checked in the standard Lemmatizer, i.e PRON, DET, ADV and AUX
- Modify the Lemmatizer class to check in lookup table as a last resort if POS not mentionned
- Modify the lemmatize function to check in lookup table as a last resort
- Init files are updated so the model can support all the functionalities mentioned above
- Add words to tokenizer_exceptions_list.py in respect to regex used in tokenizer_exceptions.py

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [X] I have submitted the spaCy Contributor Agreement.
- [X] I ran the tests, and all new and existing tests passed.
- [X] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Set version to 2.0.13

* Fix formatting and consistency

* Update docs for new version [ci skip]

* Increment version [ci skip]

* Add info on wheels [ci skip]

* Adding "This is a sentence" example to Sinhala (#2846)

* Add wheels badge

* Update badge [ci skip]

* Update README.rst [ci skip]

* Update murmurhash pin

* Increment version to 2.0.14.dev0

* Update GPU docs for v2.0.14

* Add wheel to setup_requires

* Import prefer_gpu and require_gpu functions from Thinc

* Add tests for prefer_gpu() and require_gpu()

* Update requirements and setup.py

* Workaround bug in thinc require_gpu

* Set version to v2.0.14

* Update push-tag script

* Unhack prefer_gpu

* Require thinc 6.10.6

* Update prefer_gpu and require_gpu docs [ci skip]

* Fix specifiers for GPU

* Set version to 2.0.14.dev1

* Set version to 2.0.14

* Update Thinc version pin

* Increment version

* Fix msgpack-numpy version pin

* Increment version

* Update version to 2.0.16

* Update version [ci skip]

* Redundant ')' in the Stop words' example (#2856)

<!--- Provide a general summary of your changes in the title. -->

## Description
<!--- Use this section to describe your changes. If your changes required
testing, include information about the testing environment and the tests you
ran. If your test fixes a bug reported in an issue, don't forget to include the
issue number. If your PR is still a work in progress, that's totally fine – just
include a note to let us know. -->

### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [ ] I have submitted the spaCy Contributor Agreement.
- [ ] I ran the tests, and all new and existing tests passed.
- [ ] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Documentation improvement regarding joblib and SO (#2867)

Some documentation improvements

## Description
1. Fixed the dead URL to joblib
2. Fixed Stack Overflow brand name (with space)

### Types of change
Documentation

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* raise error when setting overlapping entities as doc.ents (#2880)

* Fix out-of-bounds access in NER training

The helper method state.B(1) gets the index of the first token of the
buffer, or -1 if no such token exists. Normally this is safe because we
pass this to functions like state.safe_get(), which returns an empty
token. Here we used it directly as an array index, which is not okay!

This error may have been the cause of out-of-bounds access errors during
training. Similar errors may still be around, so much be hunted down.
Hunting this one down took a long time...I printed out values across
training runs and diffed, looking for points of divergence between
runs, when no randomness should be allowed.

* Change PyThaiNLP Url (#2876)

* Fix missing comma

* Add example showing a fix-up rule for space entities

* Set version to 2.0.17.dev0

* Update regex version

* Revert "Update regex version"

This reverts commit 62358dd867.

* Try setting older regex version, to align with conda

* Set version to 2.0.17

* Add spacy-js to universe [ci-skip]

* Add spacy-raspberry to universe (closes #2889)

* Add script to validate universe json [ci skip]

* Removed space in docs + added contributor indo (#2909)

* - removed unneeded space in documentation

* - added contributor info

* Allow input text of length up to max_length, inclusive (#2922)

* Include universe spec for spacy-wordnet component (#2919)

* feat: include universe spec for spacy-wordnet component

* chore: include spaCy contributor agreement

* Minor formatting changes [ci skip]

* Fix image [ci skip]

Twitter URL doesn't work on live site

* Check if the word is in one of the regular lists specific to each POS (#2886)

* 💫 Create random IDs for SVGs to prevent ID clashes (#2927)

Resolves #2924.

## Description
Fixes problem where multiple visualizations in Jupyter notebooks would have clashing arc IDs, resulting in weirdly positioned arc labels. Generating a random ID prefix so even identical parses won't receive the same IDs for consistency (even if effect of ID clash isn't noticable here.)

### Types of change
bug fix

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Fix typo [ci skip]

* fixes symbolic link on py3 and windows (#2949)

* fixes symbolic link on py3 and windows
during setup of spacy using command
python -m spacy link en_core_web_sm en
closes #2948

* Update spacy/compat.py

Co-Authored-By: cicorias <cicorias@users.noreply.github.com>

* Fix formatting

* Update universe [ci skip]

* Catalan Language Support (#2940)

* Catalan language Support

* Ddding Catalan to documentation

* Sort languages alphabetically [ci skip]

* Update tests for pytest 4.x (#2965)

<!--- Provide a general summary of your changes in the title. -->

## Description
- [x] Replace marks in params for pytest 4.0 compat ([see here](https://docs.pytest.org/en/latest/deprecations.html#marks-in-pytest-mark-parametrize))
- [x] Un-xfail passing tests (some fixes in a recent update resolved a bunch of issues, but tests were apparently never updated here)

### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Fix regex pin to harmonize with conda (#2964)

* Update README.rst

* Fix bug where Vocab.prune_vector did not use 'batch_size' (#2977)

Fixes #2976

* Fix typo

* Fix typo

* Remove duplicate file

* Require thinc 7.0.0.dev2

Fixes bug in gpu_ops that would use cupy instead of numpy on CPU

* Add missing import

* Fix error IDs

* Fix tests
2018-11-29 16:30:29 +01:00
Matthew Honnibal
681258e29b Add support for pretrained tok2vec to ud-train 2018-11-29 14:54:47 +00:00
Matthew Honnibal
008e1ee1dd Update pretrain command 2018-11-29 12:36:43 +00:00
Matthew Honnibal
61e435610e
💫 Feature/improve pretraining (#2971)
* Improve spacy pretrain script

* Implement BERT-style 'masked language model' objective. Much better
results.

* Improve logging.

* Add length cap for documents, to avoid memory errors.

* Require thinc 7.0.0.dev1

* Require thinc 7.0.0.dev1

* Add argument for using pretrained vectors

* Fix defaults

* Fix syntax error

* Improve spacy pretrain script

* Implement BERT-style 'masked language model' objective. Much better
results.

* Improve logging.

* Add length cap for documents, to avoid memory errors.

* Require thinc 7.0.0.dev1

* Require thinc 7.0.0.dev1

* Add argument for using pretrained vectors

* Fix defaults

* Fix syntax error

* Tweak pretraining script

* Fix data limits in spacy.gold

* Fix pretrain script
2018-11-28 18:04:58 +01:00
Matthew Honnibal
ef0820827a
Update hyper-parameters after NER random search (#2972)
These experiments were completed a few weeks ago, but I didn't make the PR, pending model release.

    Token vector width: 128->96
    Hidden width: 128->64
    Embed size: 5000->2000
    Dropout: 0.2->0.1
    Updated optimizer defaults (unclear how important?)

This should improve speed, model size and load time, while keeping
similar or slightly better accuracy.

The tl;dr is we prefer to prevent over-fitting by reducing model size,
rather than using more dropout.
2018-11-27 18:49:52 +01:00
Ines Montani
b4581435f6 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2018-11-16 13:08:22 +01:00
Ines Montani
e2f75eb492 Fix message formatting 2018-11-16 13:08:20 +01:00
Matthew Honnibal
2874b8efd8 Fix tok2vec loading in spacy train 2018-11-15 23:34:54 +00:00
Matthew Honnibal
2ddd428834 Fix pretrain script 2018-11-15 23:34:35 +00:00
Matthew Honnibal
f8afaa0c1c Fix pretrain 2018-11-15 22:46:53 +00:00
Matthew Honnibal
6af6950e46 Fix pretrain 2018-11-15 22:45:36 +00:00
Matthew Honnibal
3e7b214e57 Make pretrain script work with stream from stdin 2018-11-15 22:44:07 +00:00
Matthew Honnibal
8fdb9bc278
💫 Add experimental ULMFit/BERT/Elmo-like pretraining (#2931)
* Add 'spacy pretrain' command

* Fix pretrain command for Python 2

* Fix pretrain command

* Fix pretrain command
2018-11-15 22:17:16 +01:00
Matthew Honnibal
8f2a6367e9 Fix usage of PyTorch BiLSTM in ud_train 2018-09-13 22:54:59 +00:00
Matthew Honnibal
445b81ce3f Support bilstm_depth argument in ud-train 2018-09-13 19:30:22 +02:00
Matthew Honnibal
3eb9f3e2b8 Fix defaults for ud-train 2018-09-13 18:05:48 +02:00
Matthew Honnibal
59cf533879 Improve ud-train script. Make config optional 2018-09-13 14:24:08 +02:00
Matthew Honnibal
da7650e84b Fix maximum doc length in ud_train script 2018-09-13 14:10:25 +02:00
Matthew Honnibal
4d2d7d5866 Fix new feature flags 2018-08-27 02:12:39 +02:00
Matthew Honnibal
9c33d4d1df Add more hyper-parameters to spacy ud-train
* subword_features: Controls whether subword features are used in the
word embeddings. True by default (specifically, prefix, suffix and word
shape). Should be set to False for languages like Chinese and Japanese.

* conv_depth: Depth of the convolutional layers. Defaults to 4.
2018-08-27 01:48:46 +02:00
Matthew Honnibal
595c893791 Expose noise_level option in train CLI 2018-08-16 00:41:44 +02:00
Matthew Honnibal
6ea981c839 Add converter for jsonl NER data 2018-08-14 14:04:32 +02:00
Matthew Honnibal
02c5c114d0 Fix usage of deprecated freqs.txt in init-model 2018-08-14 13:19:15 +02:00
Matthew Honnibal
4336397ecb Update develop from master 2018-08-14 03:04:28 +02:00
Xiaoquan Kong
f0c9652ed1 New Feature: display more detail when Error E067 (#2639)
* Fix off-by-one error

* Add verbose option

* Update verbose option

* Update documents for verbose option
2018-08-07 10:45:29 +02:00
Kaisa (Katarzyna) Korsak
e531a827db Changed conllu2json to be able to extract NER tags (#2594)
* extract ner tags from conllu file if available

* fixed a bug in regex
2018-07-25 22:21:31 +02:00
ines
d84b13e02c Merge branch 'master' into develop 2018-07-18 18:57:00 +02:00
Ole Henrik Skogstrøm
6e2930a4a2 Conll(u)-bio converter (#2525)
* Started simple conllxbiluo converter

* Fix missing BIO to BILUO conversion
2018-07-18 18:55:42 +02:00
Matthew Honnibal
8ae1bec8bf Fix init_model 2018-07-05 14:02:06 +02:00
Matthew Honnibal
dee8bdb900 Fix init-model for npz vectors 2018-07-04 02:29:48 +02:00
Matthew Honnibal
59d655e8d0 Fix model init from jsonl 2018-07-04 01:30:40 +02:00
Matthew Honnibal
1e38bea6e9 Save vectors init 2018-07-03 23:55:04 +02:00
Matthew Honnibal
6692833887 Fix init_model 2018-07-03 23:24:11 +02:00
Matthew Honnibal
4a38a26cb5 Fix init_model 2018-07-03 22:57:11 +02:00
Matthew Honnibal
019d09e3c3 Fix init model 2018-07-03 22:16:44 +02:00
Matthew Honnibal
2543f8c93a Support .npz vectors in init-model command 2018-07-03 21:42:16 +02:00
Matthew Honnibal
86aad11939 Fix init_model arg 2018-07-03 17:00:42 +02:00
Matthew Honnibal
eff42d36e3 Fix init model command 2018-07-03 16:32:23 +02:00
Matthew Honnibal
6a89faf12e Add support for jsonl-formatted lexical attributes to init-model command. 2018-07-03 12:22:56 +02:00
Matthew Honnibal
c83fccfe2a Fix output of best model 2018-06-25 23:05:56 +02:00
Matthew Honnibal
69c900f003 Fix init-model if no vectors provided 2018-06-25 18:26:02 +02:00
Matthew Honnibal
664f89327a Fix init-model if no vectors provided 2018-06-25 17:58:45 +02:00
Matthew Honnibal
c4698f5712 Don't collate model unless training succeeds 2018-06-25 16:36:42 +02:00
Matthew Honnibal
24dfbb8a28 Fix model collation 2018-06-25 14:35:24 +02:00
Matthew Honnibal
62237755a4 Import shutil 2018-06-25 13:40:17 +02:00
Matthew Honnibal
a040fca99e Import json into cli.train 2018-06-25 11:50:37 +02:00