* Handle missing reference values in scorer
Handle missing values in reference doc during scoring where it is
possible to detect an unset state for the attribute. If no reference
docs contain annotation, `None` is returned instead of a score. `spacy
evaluate` displays `-` for missing scores and the missing scores are
saved as `None`/`null` in the metrics.
Attributes without unset states:
* `token.head`: relies on `token.dep` to recognize unset values
* `doc.cats`: unable to handle missing annotation
Additional changes:
* add optional `has_annotation` check to `score_scans` to replace
`doc.sents` hack
* update `score_token_attr_per_feat` to handle missing and empty morph
representations
* fix bug in `Doc.has_annotation` for normalization of `IS_SENT_START`
vs. `SENT_START`
* Fix import
* Update return types
* rename Pipe to TrainablePipe
* split functionality between Pipe and TrainablePipe
* remove unnecessary methods from certain components
* cleanup
* hasattr(component, "pipe") should be sufficient again
* remove serialization and vocab/cfg from Pipe
* unify _ensure_examples and validate_examples
* small fixes
* hasattr checks for self.cfg and self.vocab
* make is_resizable and is_trainable properties
* serialize strings.json instead of vocab
* fix KB IO + tests
* fix typos
* more typos
* _added_strings as a set
* few more tests specifically for _added_strings field
* bump to 3.0.0a36
Add and update `score` methods, provided `scores`, and default weights
`default_score_weights` for pipeline components.
* `scores` provides all top-level keys returned by `score` (merely informative, similar to `assigns`).
* `default_score_weights` provides the default weights for a default config.
* The keys from `default_score_weights` determine which values will be
shown in the `spacy train` output, so keys with weight `0.0` will be
displayed but not counted toward the overall score.
* Update with WIP
* Update with WIP
* Update with pipeline serialization
* Update types and pipe factories
* Add deep merge, tidy up and add tests
* Fix pipe creation from config
* Don't validate default configs on load
* Update spacy/language.py
Co-authored-by: Ines Montani <ines@ines.io>
* Adjust factory/component meta error
* Clean up factory args and remove defaults
* Add test for failing empty dict defaults
* Update pipeline handling and methods
* provide KB as registry function instead of as object
* small change in test to make functionality more clear
* update example script for EL configuration
* Fix typo
* Simplify test
* Simplify test
* splitting pipes.pyx into separate files
* moving default configs to each component file
* fix batch_size type
* removing default values from component constructors where possible (TODO: test 4725)
* skip instead of xfail
* Add test for config -> nlp with multiple instances
* pipeline.pipes -> pipeline.pipe
* Tidy up, document, remove kwargs
* small cleanup/generalization for Tok2VecListener
* use DEFAULT_UPSTREAM field
* revert to avoid circular imports
* Fix tests
* Replace deprecated arg
* Make model dirs require config
* fix pickling of keyword-only arguments in constructor
* WIP: clean up and integrate full config
* Add helper to handle function args more reliably
Now also includes keyword-only args
* Fix config composition and serialization
* Improve config debugging and add visual diff
* Remove unused defaults and fix type
* Remove pipeline and factories from meta
* Update spacy/default_config.cfg
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update spacy/default_config.cfg
* small UX edits
* avoid printing stack trace for debug CLI commands
* Add support for language-specific factories
* specify the section of the config which holds the model to debug
* WIP: add Language.from_config
* Update with language data refactor WIP
* Auto-format
* Add backwards-compat handling for Language.factories
* Update morphologizer.pyx
* Fix morphologizer
* Update and simplify lemmatizers
* Fix Japanese tests
* Port over tagger changes
* Fix Chinese and tests
* Update to latest Thinc
* WIP: xfail first Russian lemmatizer test
* Fix component-specific overrides
* fix nO for output layers in debug_model
* Fix default value
* Fix tests and don't pass objects in config
* Fix deep merging
* Fix lemma lookup data registry
Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed)
* Add types
* Add Vocab.from_config
* Fix typo
* Fix tests
* Make config copying more elegant
* Fix pipe analysis
* Fix lemmatizers and is_base_form
* WIP: move language defaults to config
* Fix morphology type
* Fix vocab
* Remove comment
* Update to latest Thinc
* Add morph rules to config
* Tidy up
* Remove set_morphology option from tagger factory
* Hack use_gpu
* Move [pipeline] to top-level block and make [nlp.pipeline] list
Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them
* Fix use_gpu and resume in CLI
* Auto-format
* Remove resume from config
* Fix formatting and error
* [pipeline] -> [components]
* Fix types
* Fix tagger test: requires set_morphology?
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* make disable_pipes deprecated in favour of the new toggle_pipes
* rewrite disable_pipes statements
* update documentation
* remove bin/wiki_entity_linking folder
* one more fix
* remove deprecated link to documentation
* few more doc fixes
* add note about name change to the docs
* restore original disable_pipes
* small fixes
* fix typo
* fix error number to W096
* rename to select_pipes
* also make changes to the documentation
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* fix grad_clip naming
* cleaning up pretrained_vectors out of cfg
* further refactoring Model init's
* move Model building out of pipes
* further refactor to require a model config when creating a pipe
* small fixes
* making cfg in nn_parser more consistent
* fixing nr_class for parser
* fixing nn_parser's nO
* fix printing of loss
* architectures in own file per type, consistent naming
* convenience methods default_tagger_config and default_tok2vec_config
* let create_pipe access default config if available for that component
* default_parser_config
* move defaults to separate folder
* allow reading nlp from package or dir with argument 'name'
* architecture spacy.VocabVectors.v1 to read static vectors from file
* cleanup
* default configs for nel, textcat, morphologizer, tensorizer
* fix imports
* fixing unit tests
* fixes and clean up
* fixing defaults, nO, fix unit tests
* restore parser IO
* fix IO
* 'fix' serialization test
* add *.cfg to manifest
* fix example configs with additional arguments
* replace Morpohologizer with Tagger
* add IO bit when testing overfitting of tagger (currently failing)
* fix IO - don't initialize when reading from disk
* expand overfitting tests to also check IO goes OK
* remove dropout from HashEmbed to fix Tagger performance
* add defaults for sentrec
* update thinc
* always pass a Model instance to a Pipe
* fix piped_added statement
* remove obsolete W029
* remove obsolete errors
* restore byte checking tests (work again)
* clean up test
* further test cleanup
* convert from config to Model in create_pipe
* bring back error when component is not initialized
* cleanup
* remove calls for nlp2.begin_training
* use thinc.api in imports
* allow setting charembed's nM and nC
* fix for hardcoded nM/nC + unit test
* formatting fixes
* trigger build
* Fix ent_ids and labels properties when id attribute used in patterns
* use set for labels
* sort end_ids for comparison in entity_ruler tests
* fixing entity_ruler ent_ids test
* add to set
* Run make_doc optimistically if using phrase matcher patterns.
* remove unused coveragerc I was testing with
* format
* Refactor EntityRuler.add_patterns to use nlp.pipe for phrase patterns. Improves speed substantially.
* Removing old add_patterns function
* Fixing spacing
* Make sure token_patterns loaded as well, before generator was being emptied in from_disk
* Fix ent_ids and labels properties when id attribute used in patterns
* use set for labels
* sort end_ids for comparison in entity_ruler tests
* fixing entity_ruler ent_ids test
* add to set
* Add work in progress
* Update analysis helpers and component decorator
* Fix porting of docstrings for Python 2
* Fix docstring stuff on Python 2
* Support meta factories when loading model
* Put auto pipeline analysis behind flag for now
* Analyse pipes on remove_pipe and replace_pipe
* Move analysis to root for now
Try to find a better place for it, but it needs to go for now to avoid circular imports
* Simplify decorator
Don't return a wrapped class and instead just write to the object
* Update existing components and factories
* Add condition in factory for classes vs. functions
* Add missing from_nlp classmethods
* Add "retokenizes" to printed overview
* Update assigns/requires declarations of builtins
* Only return data if no_print is enabled
* Use multiline table for overview
* Don't support Span
* Rewrite errors/warnings and move them to spacy.errors
* Implement new API for {Phrase}Matcher.add (backwards-compatible)
* Update docs
* Also update DependencyMatcher.add
* Update internals
* Rewrite tests to use new API
* Add basic check for common mistake
Raise error with suggestion if user likely passed in a pattern instead of a list of patterns
* Fix typo [ci skip]
* test and fix for second bug of issue 4042
* fix for first bug in 4042
* crashing test for Issue 4313
* forgot one instance of resize
* remove prints
* undo uncomment
* delete test for 4313 (uses third party lib)
* add fix for Issue 4313
* unit test for 4313
* Fix typo in rule-based matching docs
* Improve token pattern checking without validation
Add more detailed token pattern checks without full JSON pattern validation and
provide more detailed error messages.
Addresses #4070 (also related: #4063, #4100).
* Check whether top-level attributes in patterns and attr for PhraseMatcher are
in token pattern schema
* Check whether attribute value types are supported in general (as opposed to
per attribute with full validation)
* Report various internal error types (OverflowError, AttributeError, KeyError)
as ValueError with standard error messages
* Check for tagger/parser in PhraseMatcher pipeline for attributes TAG, POS,
LEMMA, and DEP
* Add error messages with relevant details on how to use validate=True or nlp()
instead of nlp.make_doc()
* Support attr=TEXT for PhraseMatcher
* Add NORM to schema
* Expand tests for pattern validation, Matcher, PhraseMatcher, and EntityRuler
* Remove unnecessary .keys()
* Rephrase error messages
* Add another type check to Matcher
Add another type check to Matcher for more understandable error messages
in some rare cases.
* Support phrase_matcher_attr=TEXT for EntityRuler
* Don't use spacy.errors in examples and bin scripts
* Fix error code
* Auto-format
Also try get Azure pipelines to finally start a build :(
* Update errors.py
Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
Expected an `entity_ruler.jsonl` file in the top-level model directory, so the path passed to from_disk by default (model path plus componentn name), but with the suffix ".jsonl".
