* Draft spancat model
* Add spancat model
* Add test for extract_spans
* Add extract_spans layer
* Upd extract_spans
* Add spancat model
* Add test for spancat model
* Upd spancat model
* Update spancat component
* Upd spancat
* Update spancat model
* Add quick spancat test
* Import SpanCategorizer
* Fix SpanCategorizer component
* Import SpanGroup
* Fix span extraction
* Fix import
* Fix import
* Upd model
* Update spancat models
* Add scoring, update defaults
* Update and add docs
* Fix type
* Update spacy/ml/extract_spans.py
* Auto-format and fix import
* Fix comment
* Fix type
* Fix type
* Update website/docs/api/spancategorizer.md
* Fix comment
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Better defense
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Fix labels list
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update spacy/ml/extract_spans.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update spacy/pipeline/spancat.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Set annotations during update
* Set annotations in spancat
* fix imports in test
* Update spacy/pipeline/spancat.py
* replace MaxoutLogistic with LinearLogistic
* fix config
* various small fixes
* remove set_annotations parameter in update
* use our beloved tupley format with recent support for doc.spans
* bugfix to allow renaming the default span_key (scores weren't showing up)
* use different key in docs example
* change defaults to better-working parameters from project (WIP)
* register spacy.extract_spans.v1 for legacy purposes
* Upd dev version so can build wheel
* layers instead of architectures for smaller building blocks
* Update website/docs/api/spancategorizer.md
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update website/docs/api/spancategorizer.md
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Include additional scores from overrides in combined score weights
* Parameterize spans key in scoring
Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so
that it's possible to evaluate multiple `spancat` components in the same
pipeline.
* Use the (intentionally very short) default spans key `sc` in the
`SpanCategorizer`
* Adjust the default score weights to include the default key
* Adjust the scorer to use `spans_{spans_key}` as the prefix for the
returned score
* Revert addition of `attr_name` argument to `score_spans` and adjust
the key in the `getter` instead.
Note that for `spancat` components with a custom `span_key`, the score
weights currently need to be modified manually in
`[training.score_weights]` for them to be available during training. To
suppress the default score weights `spans_sc_p/r/f` during training, set
them to `null` in `[training.score_weights]`.
* Update website/docs/api/scorer.md
* Fix scorer for spans key containing underscore
* Increment version
* Add Spans to Evaluate CLI (#8439)
* Add Spans to Evaluate CLI
* Change to spans_key
* Add spans per_type output
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Fix spancat GPU issues (#8455)
* Fix GPU issues
* Require thinc >=8.0.6
* Switch to glorot_uniform_init
* Fix and test ngram suggester
* Include final ngram in doc for all sizes
* Fix ngrams for docs of the same length as ngram size
* Handle batches of docs that result in no ngrams
* Add tests
Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Nirant <NirantK@users.noreply.github.com>
* Use minor version for compatibility check
* Use minor version of compatibility table
* Soften warning message about incompatible models
* Add test for presence of current version in compatibility table
* Add test for download compatibility table
* Use minor version of lower pin in error message if possible
* Fall back to spacy_git_version if available
* Fix unknown version string
* Update sent_starts in Example.from_dict
Update `sent_starts` for `Example.from_dict` so that `Optional[bool]`
values have the same meaning as for `Token.is_sent_start`.
Use `Optional[bool]` as the type for sent start values in the docs.
* Use helper function for conversion to ternary ints
* Set catalogue lower pin to v2.0.2
* Update importlib-metadata pins to match
* Require catalogue v2.0.3
Switch to vendored `importlib-metadata` v3.2.0 provided by `catalogue`.
* Add util method for check
* Add new languages to list with lexeme norm tables
* Add check to all relevant components
* Add config details to warning message
Note that we're not actually inspecting the model config to see if
`NORM` is used as an attribute, so it may warn in cases where it's not
relevant.
* Fix `is_cython_func` for imported code loaded under `python_code`
module name
* Add `make_named_tempfile` context manager to test utils to test
loading of imported code
* Add test for validation of `initialize` params in custom module
* add capture argument to project_run and run_commands
* git bump to 3.0.1
* Set version to 3.0.1.dev0
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* add error handler for pipe methods
* add unit tests
* remove pipe method that are the same as their base class
* have Language keep track of a default error handler
* cleanup
* formatting
* small refactor
* add documentation
* Regression test for issue 6207
* Fix issue 6207
* Sign contributor agreement
* Minor adjustments to test
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* rename Pipe to TrainablePipe
* split functionality between Pipe and TrainablePipe
* remove unnecessary methods from certain components
* cleanup
* hasattr(component, "pipe") should be sufficient again
* remove serialization and vocab/cfg from Pipe
* unify _ensure_examples and validate_examples
* small fixes
* hasattr checks for self.cfg and self.vocab
* make is_resizable and is_trainable properties
* serialize strings.json instead of vocab
* fix KB IO + tests
* fix typos
* more typos
* _added_strings as a set
* few more tests specifically for _added_strings field
* bump to 3.0.0a36
* Regression test for issue 6207
* Fix issue 6207
* Sign contributor agreement
* Minor adjustments to test
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Support data augmentation in Corpus
* Note initial docs for data augmentation
* Add augmenter to quickstart
* Fix flake8
* Format
* Fix test
* Update spacy/tests/training/test_training.py
* Improve data augmentation arguments
* Update templates
* Move randomization out into caller
* Refactor
* Update spacy/training/augment.py
* Update spacy/tests/training/test_training.py
* Fix augment
* Fix test
Similar to how vectors are handled, move the vocab lookups to be loaded
at the start of training rather than when the vocab is initialized,
since the vocab doesn't have access to the full config when it's
created.
The option moves from `nlp.load_vocab_data` to `training.lookups`.
Typically these tables will come from `spacy-lookups-data`, but any
`Lookups` object can be provided.
The loading from `spacy-lookups-data` is now strict, so configs for each
language should specify the exact tables required. This also makes it
easier to control whether the larger clusters and probs tables are
included.
To load `lexeme_norm` from `spacy-lookups-data`:
```
[training.lookups]
@misc = "spacy.LoadLookupsData.v1"
lang = ${nlp.lang}
tables = ["lexeme_norm"]
```
* WIP: Concept for modifying nlp object before and after init
* Make callbacks return nlp object
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Raise if callbacks don't return correct type
* Rename, update types, add after_pipeline_creation
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Allow adding pipeline components from source model
* Config: name -> component
* Improve error messages
* Fix error and test
* Add frozen components and exclude logic
* Remove exclude from Language.evaluate
* Init sourced components with current vocab
* Fix error codes
