Commit Graph

7207 Commits

Author SHA1 Message Date
Ines Montani
01c394eb23 Update to latest Typer and remove hacks 2020-06-25 12:27:19 +02:00
Ines Montani
82a03ee18e Replace python with sys.executable 2020-06-25 12:26:53 +02:00
Ines Montani
8131a65dee Update __init__.py 2020-06-22 16:09:09 +02:00
Ines Montani
2ad7a02400 Merge branch 'develop' into feature/project-cli 2020-06-22 15:33:11 +02:00
Ines Montani
83b4aa05c9
Merge pull request #5626 from explosion/feature/typer 2020-06-22 06:29:03 -07:00
Ines Montani
0ee6d7a4d1 Remove project stuff from this branch 2020-06-22 14:54:38 +02:00
Ines Montani
a6b76440b7 Update project CLI 2020-06-22 14:53:31 +02:00
Ines Montani
3f2f5f9cb3 Remove ml_datasets from install dependencies 2020-06-22 12:14:51 +02:00
Ines Montani
dc5d535659 Tidy up info 2020-06-22 01:17:11 +02:00
Ines Montani
189ed56777 Fix and simplify info 2020-06-22 01:07:48 +02:00
Ines Montani
fca3907d4e Add correct uppercase variants for boolean flags 2020-06-22 00:57:28 +02:00
Ines Montani
79dd824906 Tidy up 2020-06-22 00:45:40 +02:00
Ines Montani
1e5b4d8524 Fix DVC check 2020-06-22 00:30:05 +02:00
Ines Montani
5ba1df5e78 Update project CLI 2020-06-22 00:15:06 +02:00
Ines Montani
ef5f548fb0 Tidy up and auto-format 2020-06-21 22:38:04 +02:00
Ines Montani
f77e0bc028 Merge branch 'develop' into master-tmp 2020-06-21 22:34:15 +02:00
Ines Montani
40bb918a4c Remove unicode declarations and tidy up 2020-06-21 22:34:10 +02:00
Ines Montani
275bab62df Refactor CLI 2020-06-21 21:35:01 +02:00
Ines Montani
c12713a8be Port CLI to Typer and add project stubs 2020-06-21 13:44:00 +02:00
svlandeg
689600e17d add additional test back in (it works now) 2020-06-20 23:23:57 +02:00
svlandeg
2f6062a8a4 add line that got removed from EntityLinker 2020-06-20 23:14:45 +02:00
svlandeg
12dc8ab208 remove redundant code from master in EntityLinker 2020-06-20 23:07:42 +02:00
svlandeg
6179774278 fix test_build_dependencies by ignoring new libs 2020-06-20 22:49:37 +02:00
svlandeg
256d4c27c8 fix tagger begin_training being called without examples 2020-06-20 22:38:00 +02:00
svlandeg
5cb812e0ab fix NER warn empty lookups (cf PR #5588) 2020-06-20 22:04:18 +02:00
svlandeg
c9242e9bf4 fix entity linker (cf PR #5548) 2020-06-20 21:47:23 +02:00
svlandeg
dc069e90b3 fix token.morph_ for v.3 (cf PR #5517) 2020-06-20 21:13:11 +02:00
Ines Montani
988d2a4eda
Add --code-path option to train CLI (#5618) 2020-06-20 18:43:12 +02:00
Ines Montani
5424b70e51 Remove v2 test 2020-06-20 16:18:53 +02:00
Ines Montani
63c22969f4 Update test_issue5230.py 2020-06-20 16:17:48 +02:00
Ines Montani
296b5d633b Remove references to Python 2 / is_python2 2020-06-20 16:11:13 +02:00
Ines Montani
0cdb631e6c Fix merge errors 2020-06-20 16:02:42 +02:00
Ines Montani
52728d8fa3 Merge branch 'develop' into master-tmp 2020-06-20 15:52:00 +02:00
Ines Montani
f91e9e8c84 Remove F841 [ci skip] 2020-06-20 14:47:17 +02:00
Ines Montani
8283df80e9 Tidy up and auto-format 2020-06-20 14:15:04 +02:00
Marat M. Yavrumyan
8120b641cc
Update lex_attrs.py (#5608) 2020-06-19 20:00:34 +02:00
Ines Montani
e9d3e177f0 Merge branch 'master' into v2.3.x 2020-06-16 16:31:38 +02:00
Matthew Honnibal
7ff447c5a0 Set version to v2.3.0 2020-06-15 18:22:25 +02:00
Adriane Boyd
0d8405aafa Updates to docstrings (#5589) 2020-06-15 14:58:36 +02:00
Adriane Boyd
e867e9fa8f Fix and add warnings related to spacy-lookups-data (#5588)
* Fix warning message for lemmatization tables

* Add a warning when the `lexeme_norm` table is empty. (Given the
relatively lang-specific loading for `Lookups`, it seemed like too much
overhead to dynamically extract the list of languages, so for now it's
hard-coded.)
2020-06-15 14:58:29 +02:00
Arvind Srinivasan
f698007907 Added Tamil Example Sentences (#5583)
* Added Examples for Tamil Sentences

#### Description
This PR add example sentences for the Tamil language which were missing as per issue #1107 

#### Type of Change
This is an enhancement.

* Accepting spaCy Contributor Agreement

* Signed on my behalf as an individual
2020-06-15 14:58:21 +02:00
Adriane Boyd
c94f7d0e75
Updates to docstrings (#5589) 2020-06-15 14:56:51 +02:00
Adriane Boyd
c482f20778
Fix and add warnings related to spacy-lookups-data (#5588)
* Fix warning message for lemmatization tables

* Add a warning when the `lexeme_norm` table is empty. (Given the
relatively lang-specific loading for `Lookups`, it seemed like too much
overhead to dynamically extract the list of languages, so for now it's
hard-coded.)
2020-06-15 14:56:04 +02:00
Arvind Srinivasan
aa5b40fa64
Added Tamil Example Sentences (#5583)
* Added Examples for Tamil Sentences

#### Description
This PR add example sentences for the Tamil language which were missing as per issue #1107 

#### Type of Change
This is an enhancement.

* Accepting spaCy Contributor Agreement

* Signed on my behalf as an individual
2020-06-13 15:56:26 +02:00
theudas
3f5e2f9d99 Added Parameter to NEL to take n sentences into account (#5548)
* added setting for neighbour sentence in NEL

* added spaCy contributor agreement

* added multi sentence also for training

* made the try-except block smaller
2020-06-12 15:15:03 +02:00
adrianeboyd
4724fa4cf4 Expand Japanese requirements warning (#5572)
Include explicit install instructions in Japanese requirements warning.
2020-06-12 15:14:55 +02:00
adrianeboyd
44967a3f9c Update pytest conf for sudachipy with Japanese (#5574) 2020-06-12 15:14:47 +02:00
Matthew Honnibal
a1c5b694be Small fixes to train defaults 2020-06-12 02:22:13 +02:00
theudas
fa46e0bef2
Added Parameter to NEL to take n sentences into account (#5548)
* added setting for neighbour sentence in NEL

* added spaCy contributor agreement

* added multi sentence also for training

* made the try-except block smaller
2020-06-12 02:03:23 +02:00
Sofie Van Landeghem
c0f4a1e43b
train is from-config by default (#5575)
* verbose and tag_map options

* adding init_tok2vec option and only changing the tok2vec that is specified

* adding omit_extra_lookups and verifying textcat config

* wip

* pretrain bugfix

* add replace and resume options

* train_textcat fix

* raw text functionality

* improve UX when KeyError or when input data can't be parsed

* avoid unnecessary access to goldparse in TextCat pipe

* save performance information in nlp.meta

* add noise_level to config

* move nn_parser's defaults to config file

* multitask in config - doesn't work yet

* scorer offering both F and AUC options, need to be specified in config

* add textcat verification code from old train script

* small fixes to config files

* clean up

* set default config for ner/parser to allow create_pipe to work as before

* two more test fixes

* small fixes

* cleanup

* fix NER pickling + additional unit test

* create_pipe as before
2020-06-12 02:02:07 +02:00
adrianeboyd
556895177e
Expand Japanese requirements warning (#5572)
Include explicit install instructions in Japanese requirements warning.
2020-06-11 13:47:37 +02:00
adrianeboyd
fe167fcf7d
Update pytest conf for sudachipy with Japanese (#5574) 2020-06-11 10:23:50 +02:00
Jones Martins
bab30e4ad2
Add "c'mon" token exception (#5570)
* Add "c'mon" exception

* Fix typo in "C'mon" exception
2020-06-10 21:54:06 +02:00
Jones Martins
28db7dd5d9
Add missing pronoums/determiners (#5569)
* Add missing pronoums/determiners

* Add test for missing pronoums

* Add contributor file
2020-06-10 18:47:04 +02:00
adrianeboyd
0a70bd6281
Bump version to 2.3.0.dev1 (#5567) 2020-06-09 15:47:31 +02:00
adrianeboyd
b7e6e1b9a7
Disable sentence segmentation in ja tokenizer (#5566) 2020-06-09 12:00:59 +02:00
adrianeboyd
f162815f45
Handle empty and whitespace-only docs for Japanese (#5564)
Handle empty and whitespace-only docs in the custom alignment method
used by the Japanese tokenizer.
2020-06-08 21:09:23 +02:00
adrianeboyd
3bf111585d
Update Japanese tokenizer config and add serialization (#5562)
* Use `config` dict for tokenizer settings
* Add serialization of split mode setting
* Add tests for tokenizer split modes and serialization of split mode
setting

Based on #5561
2020-06-08 16:29:05 +02:00
Hiroshi Matsuda
456bf47f51
fix a bug causing mis-alignments (#5560) 2020-06-08 15:49:34 +02:00
Ines Montani
d93cbeb14f
Add warning for loose version constraints (#5536)
* Add warning for loose version constraints

* Update wording [ci skip]

* Tweak error message

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-06-05 12:42:15 +02:00
adrianeboyd
1ac43d78f9
Avoid libc.stdint for UINT64_MAX (#5545) 2020-06-04 20:02:05 +02:00
Paul O'Leary McCann
410fb7ee43
Add Japanese Model (#5544)
* Add more rules to deal with Japanese UD mappings

Japanese UD rules sometimes give different UD tags to tokens with the
same underlying POS tag. The UD spec indicates these cases should be
disambiguated using the output of a tool called "comainu", but rules are
enough to get the right result.

These rules are taken from Ginza at time of writing, see #3756.

* Add new tags from GSD

This is a few rare tags that aren't in Unidic but are in the GSD data.

* Add basic Japanese sentencization

This code is taken from Ginza again.

* Add sentenceizer quote handling

Could probably add more paired characters but this will do for now. Also
includes some tests.

* Replace fugashi with SudachiPy

* Modify tag format to match GSD annotations

Some of the tests still need to be updated, but I want to get this up
for testing training.

* Deal with case with closing punct without opening

* refactor resolve_pos()

* change tag field separator from "," to "-"

* add TAG_ORTH_MAP

* add TAG_BIGRAM_MAP

* revise rules for 連体詞

* revise rules for 連体詞

* improve POS about 2%

* add syntax_iterator.py (not mature yet)

* improve syntax_iterators.py

* improve syntax_iterators.py

* add phrases including nouns and drop NPs consist of STOP_WORDS

* First take at noun chunks

This works in many situations but still has issues in others.

If the start of a subtree has no noun, then nested phrases can be
generated.

    また行きたい、そんな気持ちにさせてくれるお店です。
    [そんな気持ち, また行きたい、そんな気持ちにさせてくれるお店]

For some reason て gets included sometimes. Not sure why.

    ゲンに連れ添って円盤生物を調査するパートナーとなる。
    [て円盤生物, ...]

Some phrases that look like they should be split are grouped together;
not entirely sure that's wrong. This whole thing becomes one chunk:

    道の駅遠山郷北側からかぐら大橋南詰現道交点までの1.060kmのみ開通済み

* Use new generic get_words_and_spaces

The new get_words_and_spaces function is simpler than what was used in
Japanese, so it's good to be able to switch to it. However, there was an
issue. The new function works just on text, so POS info could get out of
sync. Fixing this required a small change to the way dtokens (tokens
with POS and lemma info) were generated.

Specifically, multiple extraneous spaces now become a single token, so
when generating dtokens multiple space tokens should be created in a
row.

* Fix noun_chunks, should be working now

* Fix some tests, add naughty strings tests

Some of the existing tests changed because the tokenization mode of
Sudachi changed to the more fine-grained A mode.

Sudachi also has issues with some strings, so this adds a test against
the naughty strings.

* Remove empty Sudachi tokens

Not doing this creates zero-length tokens and causes errors in the
internal spaCy processing.

* Add yield_bunsetu back in as a separate piece of code

Co-authored-by: Hiroshi Matsuda <40782025+hiroshi-matsuda-rit@users.noreply.github.com>
Co-authored-by: hiroshi <hiroshi_matsuda@megagon.ai>
2020-06-04 19:15:43 +02:00
Matthew Honnibal
8411d4f4e6
Merge pull request #5543 from svlandeg/feature/pretrain-config
pretrain from config
2020-06-04 19:07:12 +02:00
svlandeg
3ade455fd3 formatting 2020-06-04 16:09:55 +02:00
svlandeg
776d4f1190 cleanup 2020-06-04 16:07:30 +02:00
svlandeg
6b027d7689 remove duplicate model definition of tok2vec layer 2020-06-04 15:49:23 +02:00
svlandeg
1775f54a26 small little fixes 2020-06-03 22:17:02 +02:00
svlandeg
07886a3de3 rename init_tok2vec to resume 2020-06-03 22:00:25 +02:00
svlandeg
4ed6278663 small fixes to pretrain config, init_tok2vec TODO 2020-06-03 19:32:40 +02:00
svlandeg
ffe0451d09 pretrain from config 2020-06-03 14:45:00 +02:00
Ines Montani
a8875d4a4b Fix typo 2020-06-03 14:42:39 +02:00
Ines Montani
4e0610d0d4 Update warning codes 2020-06-03 14:37:09 +02:00
Ines Montani
810fce3bb1 Merge branch 'develop' into master-tmp 2020-06-03 14:36:59 +02:00
Adriane Boyd
b0ee76264b Remove debugging 2020-06-03 14:20:42 +02:00
Adriane Boyd
1d8168d1fd Fix problems with lower and whitespace in variants
Port relevant changes from #5361:

* Initialize lower flag explicitly

* Handle whitespace words from GoldParse correctly when creating raw
text with orth variants
2020-06-03 14:15:58 +02:00
Adriane Boyd
10d938f221 Update default cfg dir in train CLI 2020-06-03 14:15:50 +02:00
Adriane Boyd
f1f9c8b417 Port train CLI updates
Updates from #5362 and fix from #5387:

* `train`:

  * if training on GPU, only run evaluation/timing on CPU in the first
    iteration

  * if training is aborted, exit with a non-0 exit status
2020-06-03 14:03:43 +02:00
Adriane Boyd
8c758ed1eb Fix meta path 2020-06-03 12:11:57 +02:00
Adriane Boyd
a57bdeecac Test util.get_model_meta instead of util.load_model 2020-06-03 12:10:12 +02:00
svlandeg
eac12cbb77 make dropout in embed layers configurable 2020-06-03 11:50:16 +02:00
svlandeg
e91485dfc4 add discard_oversize parameter, move optimizer to training subsection 2020-06-03 10:04:16 +02:00
svlandeg
03c58b488c prevent infinite loop, custom warning 2020-06-03 10:00:21 +02:00
svlandeg
6504b7f161 Merge remote-tracking branch 'upstream/develop' into feature/pretrain-config 2020-06-03 08:30:16 +02:00
svlandeg
c5ac382f0a fix name clash 2020-06-02 22:24:57 +02:00
svlandeg
2bf5111ecf additional test with discard_oversize=False 2020-06-02 22:09:37 +02:00
svlandeg
aa6271b16c extending algorithm to deal better with edge cases 2020-06-02 22:05:08 +02:00
svlandeg
f2e162fc60 it's only oversized if the tolerance level is also exceeded 2020-06-02 19:59:04 +02:00
svlandeg
ef834b4cd7 fix comments 2020-06-02 19:50:44 +02:00
svlandeg
6208d322d3 slightly more challenging unit test 2020-06-02 19:47:30 +02:00
svlandeg
6651fafd5c using overflow buffer for examples within the tolerance margin 2020-06-02 19:43:39 +02:00
svlandeg
85b0597ed5 add test for minibatch util 2020-06-02 18:26:21 +02:00
svlandeg
5b350a6c99 bugfix of the bugfix 2020-06-02 17:49:33 +02:00
Adriane Boyd
75f08ad62d Remove unnecessary check 2020-06-02 17:41:25 +02:00
Adriane Boyd
bbc1836581 Add rudimentary version checks on model load 2020-06-02 17:33:48 +02:00
svlandeg
fdfd822936 rewrite minibatch_by_words function 2020-06-02 15:22:54 +02:00
svlandeg
ec52e7f886 add oversize examples before StopIteration returns 2020-06-02 13:21:55 +02:00
svlandeg
e0f9f448f1 remove Tensorizer 2020-06-01 23:38:48 +02:00
Leo
925e938570
Spanish tokenizer exception and examples improvement (#5531)
* Spanish tokenizer exception additions. Added Spanish question examples

* erased slang tokenization examples
2020-06-01 18:18:34 +02:00
Matthew Honnibal
67af3a32b0
Merge pull request #5527 from adrianeboyd/bugfix/tagger-sp-tag-map
Preserve _SP when filtering tag map in Tagger
2020-06-01 12:00:21 +02:00
Leo
c21c308ecb
corrected issue #5524 changed <U+009C> 'STRING TERMINATOR' for <U+0153> LATIN SMALL LIGATURE OE' (#5526) 2020-05-31 22:08:12 +02:00
Adriane Boyd
a005ccd6d7 Preserve _SP when filtering tag map in Tagger
To allow "SP" as a tag (for Chinese OntoNotes), preserve "_SP" if
present as the reference `SPACE` POS in the tag map in
`Tagger.begin_training()`.
2020-05-31 19:57:54 +02:00
Ines Montani
b5ae2edcba
Merge pull request #5516 from explosion/feature/improve-model-version-deps 2020-05-31 12:54:01 +02:00
Ines Montani
dc186afdc5 Add warning 2020-05-30 15:34:54 +02:00
Ines Montani
b7aff6020c Make functions more general purpose and update docstrings and tests 2020-05-30 15:18:53 +02:00
Ines Montani
a7e370bcbf Don't override spaCy version 2020-05-30 15:03:18 +02:00
Ines Montani
e47e5a4b10 Use more sophisticated version parsing logic 2020-05-30 15:01:58 +02:00
svlandeg
15134ef611 fix deserialization order 2020-05-30 12:53:32 +02:00
Matthew Honnibal
64adda3202 Revert "Remove peeking from Parser.begin_training (#5456)"
This reverts commit 9393253b66.

The model shouldn't need to see all examples, and actually in v3 there's
no equivalent step. All examples are provided to the component, for the
component to do stuff like figuring out the labels. The model just needs
to do stuff like shape inference.
2020-05-29 23:21:55 +02:00
Matthew Honnibal
85f1acfaa0
Merge pull request #5517 from adrianeboyd/bugfix/morph-repr
Remove MorphAnalysis __str__ and __repr__
2020-05-29 19:20:56 +02:00
svlandeg
291483157d prevent loading a pretrained Tok2Vec layer AND pretrained components 2020-05-29 17:38:33 +02:00
Adriane Boyd
e1b7cbd197 Remove MorphAnalysis __str__ and __repr__ 2020-05-29 14:33:47 +02:00
Ines Montani
4fd087572a WIP: improve model version deps 2020-05-28 12:51:37 +02:00
Matthw Honnibal
58750b06f8 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-05-27 22:18:36 +02:00
Matthew Honnibal
aecd1437cc
Merge pull request #5508 from adrianeboyd/bugfix/tag-map-sp-tag
Prefer _SP over SP for default tag map space attrs
2020-05-27 20:39:40 +02:00
Adriane Boyd
25de2a2191 Improve vector name loading from model meta 2020-05-27 14:48:54 +02:00
adrianeboyd
aad0610a85
Map NR to PROPN (#5512) 2020-05-26 22:30:53 +02:00
Adriane Boyd
b6b5908f5e Prefer _SP over SP for default tag map space attrs
If `_SP` is already in the tag map, use the mapping from `_SP` instead
of `SP` so that `SP` can be a valid non-space tag. (Chinese has a
non-space tag `SP` which was overriding the mapping of `_SP` to
`SPACE`.)
2020-05-26 14:57:13 +02:00
Adriane Boyd
1eed101be9 Fix Polish lemmatizer for deserialized models
Restructure Polish lemmatizer not to depend on lookups data in
`__init__` since the lemmatizer is initialized before the lookups data
is loaded from a saved model. The lookups tables are accessed first in
`__call__` instead once the data is available.
2020-05-26 09:56:12 +02:00
Ines Montani
24ef6680fa
Merge pull request #5499 from adrianeboyd/chore/bump-version-deps-v2.3.0 2020-05-25 13:25:45 +02:00
Adriane Boyd
3f727bc539 Switch to v2.3.0.dev0 2020-05-25 12:57:20 +02:00
Adriane Boyd
736f3cb5af Bump version and deps for v2.3.0
* spacy to v2.3.0
* thinc to v7.4.1
* spacy-lookups-data to v0.3.2
2020-05-25 12:03:49 +02:00
Adriane Boyd
e06ca7ea24 Switch to new add API in PhraseMatcher unpickle 2020-05-25 11:22:47 +02:00
Ines Montani
1a15896ba9 unicode -> str consistency [ci skip] 2020-05-24 18:51:10 +02:00
Ines Montani
5d3806e059 unicode -> str consistency 2020-05-24 17:20:58 +02:00
Ines Montani
387c7aba15 Update test 2020-05-24 14:55:16 +02:00
Ines Montani
f9786d765e Simplify is_package check 2020-05-24 14:48:56 +02:00
Matthw Honnibal
2d9de8684d Support use_pytorch_for_gpu_memory config 2020-05-22 23:10:40 +02:00
Ines Montani
4465cad6c5 Rename spacy.analysis to spacy.pipe_analysis 2020-05-22 17:42:06 +02:00
Ines Montani
25d6ed3fb8
Merge pull request #5489 from explosion/feature/connected-components 2020-05-22 17:40:11 +02:00
Ines Montani
841c05b47b
Merge pull request #5490 from explosion/fix/remove-jsonschema 2020-05-22 17:39:54 +02:00
Ines Montani
569a65b60e Auto-format 2020-05-22 16:55:42 +02:00
Ines Montani
d844528c5f Add test for is_compatible_model 2020-05-22 16:55:15 +02:00
Ines Montani
12b7be1d98 Remove jsonschema from dependencies 2020-05-22 16:49:26 +02:00
Matthew Honnibal
f7f6df7275 Move to spacy.analysis 2020-05-22 16:43:18 +02:00
Matthew Honnibal
78d79d94ce Guess set_annotations=True in nlp.update
During `nlp.update`, components can be passed a boolean set_annotations
to indicate whether they should assign annotations to the `Doc`. This
needs to be called if downstream components expect to use the
annotations during training, e.g. if we wanted to use tagger features in
the parser.

Components can specify their assignments and requirements, so we can
figure out which components have these inter-dependencies. After
figuring this out, we can guess whether to pass set_annotations=True.

We could also call set_annotations=True always, or even just have this
as the only behaviour. The downside of this is that it would require the
`Doc` objects to be created afresh to avoid problematic modifications.
One approach would be to make a fresh copy of the `Doc` objects within
`nlp.update()`, so that we can write to the objects without any
problems. If we do that, we can drop this logic and also drop the
`set_annotations` mechanism. I would be fine with that approach,
although it runs the risk of introducing some performance overhead, and
we'll have to take care to copy all extension attributes etc.
2020-05-22 15:55:45 +02:00
Ines Montani
6728747f71
Merge pull request #5486 from explosion/fix/compat-py2 2020-05-22 15:47:21 +02:00
Ines Montani
6e6db6afb6 Better model compatibility and validation 2020-05-22 15:42:46 +02:00
Matthew Honnibal
f6078d866a
Merge pull request #5121 from adrianeboyd/bugfix/revert-token-match
Revert token_match priority changes from #4374 and extend token match options
2020-05-22 14:42:51 +02:00
Ines Montani
c685ee734a Fix compat for v2.x branch 2020-05-22 14:22:36 +02:00
Adriane Boyd
e4a1b5dab1 Rename to url_match
Rename to `url_match` and update docs.
2020-05-22 12:41:03 +02:00
Adriane Boyd
730fa493a4 Merge remote-tracking branch 'upstream/master' into bugfix/revert-token-match 2020-05-22 12:18:00 +02:00
Adriane Boyd
71fe61fdcd Disallow merging 0-length spans 2020-05-22 10:14:34 +02:00
Matthew Honnibal
93c4d13588
Merge pull request #5264 from lfiedler/issue-5230
Fix ResourceWarnings during unittest
2020-05-22 00:31:07 +02:00
Matthew Honnibal
e1cb7e838b
Merge pull request #5481 from explosion/feature/blank-shortcut-v2
Add blank:{lang} shortcut support to util.load_model
2020-05-22 00:08:23 +02:00
Ines Montani
2250380816
Merge pull request #5482 from explosion/fix/backwards-compat-super 2020-05-21 21:51:46 +02:00
Ines Montani
891fa59009 Use backwards-compatible super() 2020-05-21 20:52:48 +02:00
Matthew Honnibal
5ce02c1b17
Merge pull request #5470 from svlandeg/bugfix/noun-chunks
Bugfix in noun chunks
2020-05-21 20:51:31 +02:00
Matthw Honnibal
25b51f4fc8 Set version to v3.0.0.dev9 2020-05-21 20:47:52 +02:00
Matthw Honnibal
bc94fdabd0 Fix begin_training 2020-05-21 20:46:21 +02:00
Matthw Honnibal
d507ac28d8 Fix shape inference 2020-05-21 20:46:10 +02:00
Ines Montani
cb02bff0eb Add blank:{lang} shortcut to util.load_mode 2020-05-21 20:24:07 +02:00
Matthw Honnibal
df87c32a40 Pass smaller doc sample into model initialize 2020-05-21 20:17:24 +02:00
Ines Montani
581bda9f98 Update senter test and auto-format 2020-05-21 20:17:14 +02:00
Ines Montani
0f1beb5ff2 Tidy up and avoid absolute spacy imports in core 2020-05-21 20:05:03 +02:00
svlandeg
51715b9f72 span / noun chunk has +1 because end is exclusive 2020-05-21 19:56:56 +02:00
Adriane Boyd
132b2a6898 Merge remote-tracking branch 'upstream/master-tmp' into HEAD 2020-05-21 19:50:30 +02:00
Adriane Boyd
17ee9ab53a Fix _SP/POS=SPACE in strings serialization tests 2020-05-21 19:49:08 +02:00
Ines Montani
245f91df78 Fix merge issues 2020-05-21 19:42:13 +02:00
Matthw Honnibal
3b5cfec1fc Tweak memory management in train_from_config 2020-05-21 19:32:04 +02:00
Matthw Honnibal
f075655deb Fix shape inference in begin_training 2020-05-21 19:26:29 +02:00
svlandeg
84d5b7ad0a Merge remote-tracking branch 'upstream/master' into bugfix/noun-chunks
# Conflicts:
#	spacy/lang/el/syntax_iterators.py
#	spacy/lang/en/syntax_iterators.py
#	spacy/lang/fa/syntax_iterators.py
#	spacy/lang/fr/syntax_iterators.py
#	spacy/lang/id/syntax_iterators.py
#	spacy/lang/nb/syntax_iterators.py
#	spacy/lang/sv/syntax_iterators.py
2020-05-21 19:19:50 +02:00
svlandeg
f7d10da555 avoid unnecessary loop to check overlapping noun chunks 2020-05-21 19:15:57 +02:00
Ines Montani
631e20d0c6 Fix test and schemas 2020-05-21 19:01:02 +02:00
Ines Montani
d34fc0915e Remove serialization getter 2020-05-21 18:48:21 +02:00
Ines Montani
f44897e4c6 Update warning IDs 2020-05-21 18:39:11 +02:00
Ines Montani
24f72c669c Merge branch 'develop' into master-tmp 2020-05-21 18:39:06 +02:00
Ines Montani
c6ec19c844 Add missing declaration 2020-05-21 17:30:05 +02:00
Matthew Honnibal
884d9b060d
Merge pull request #5466 from adrianeboyd/feature/omit-extra-lexeme-info
Add option to omit extra lexeme tables in CLI
2020-05-21 16:40:02 +02:00
Matthew Honnibal
e6c4c1a507
Merge pull request #5468 from adrianeboyd/feature/cli-conllu-misc-ner
Improve handling of NER in CoNLL-U MISC
2020-05-21 16:39:46 +02:00
Matthew Honnibal
26cd6a0229
Merge pull request #5462 from adrianeboyd/feature/lemmatizer-all-upos
Extend lemmatizer rules for all UPOS tags
2020-05-21 16:05:31 +02:00
Matthew Honnibal
cad9b290a2
Merge branch 'master' into feature/omit-extra-lexeme-info 2020-05-21 16:04:24 +02:00
Matthew Honnibal
1f572ce89b
Merge pull request #5473 from explosion/fix/travis-tests
Fix Python 2.7 compat
2020-05-21 15:56:16 +02:00
Ines Montani
a9cb2882cb
Rename argument: doc_or_span/obj -> doclike (#5463)
* doc_or_span -> obj

* Revert "doc_or_span -> obj"

This reverts commit 78bb9ff5e0.

* obj -> doclike

* Refer to correct object
2020-05-21 15:17:39 +02:00
Ines Montani
bea863acd2 Fix naming conflict and formatting 2020-05-21 14:24:38 +02:00
Ines Montani
bd6353715a Merge branch 'master' into fix/travis-tests 2020-05-21 14:23:04 +02:00
Ines Montani
d8f3190c0a Tidy up and auto-format 2020-05-21 14:14:01 +02:00
Ines Montani
56de520afd Try to fix tests on Travis (2.7) 2020-05-21 14:04:57 +02:00
adrianeboyd
d45602bc11
Merge branch 'master' into feature/omit-extra-lexeme-info 2020-05-21 10:26:01 +02:00
svlandeg
b221bcf1ba fixing all languages 2020-05-21 00:17:28 +02:00
svlandeg
b509a3e7fc fix: use actual range in 'seen' instead of subtree 2020-05-20 23:06:39 +02:00
svlandeg
36a94c409a failing test to reproduce overlapping spans problem 2020-05-20 23:06:03 +02:00
adrianeboyd
49ef06d793
Add option for base model in init-model CLI (#5467)
Intended for languages like Chinese with a custom tokenizer.
2020-05-20 18:49:11 +02:00
Adriane Boyd
4b229bfc22 Improve handling of NER in CoNLL-U MISC 2020-05-20 18:48:51 +02:00
Matthew Honnibal
609c0ba557
Fix accidentally quadratic runtime in Example.split_sents (#5464)
* Tidy up train-from-config a bit

* Fix accidentally quadratic perf in TokenAnnotation.brackets

When we're reading in the gold data, we had a nested loop where
we looped over the brackets for each token, looking for brackets
that start on that word. This is accidentally quadratic, because
we have one bracket per word (for the POS tags). So we had
an O(N**2) behaviour here that ended up being pretty slow.

To solve this I'm indexing the brackets by their starting word
on the TokenAnnotations object, and having a property to provide
the previous view.

* Fixes
2020-05-20 18:48:18 +02:00
Adriane Boyd
daaa7bf451 Add option to omit extra lexeme tables in CLI 2020-05-20 15:51:44 +02:00
Adriane Boyd
8cba0e41d8 Return lowercase form as default except for PROPN 2020-05-20 15:35:08 +02:00
adrianeboyd
9393253b66
Remove peeking from Parser.begin_training (#5456)
Inspect all instances in `Parser.begin_training` rather than only the
first 1000.
2020-05-20 15:18:06 +02:00
Matthw Honnibal
fda7355508 Fix train-from-config 2020-05-20 12:30:21 +02:00
Matthw Honnibal
24efd54a42 Merge from develop 2020-05-20 12:27:31 +02:00
Sofie Van Landeghem
7f5715a081
Various fixes to NEL functionality, Example class etc (#5460)
* setting KB in the EL constructor, similar to how the model is passed on

* removing wikipedia example files - moved to projects

* throw an error when nlp.update is called with 2 positional arguments

* rewriting the config logic in create pipe to accomodate for other objects (e.g. KB) in the config

* update config files with new parameters

* avoid training pipeline components that don't have a model (like sentencizer)

* various small fixes + UX improvements

* small fixes

* set thinc to 8.0.0a9 everywhere

* remove outdated comment
2020-05-20 11:41:12 +02:00
Adriane Boyd
4fa9670537 Extend lemmatizer rules for all UPOS tags 2020-05-20 10:15:43 +02:00
Matthew Honnibal
664a3603b0 Set version to v3.0.0.dev8 2020-05-19 17:15:39 +02:00
adrianeboyd
40e65d6f63
Fix most_similar for vectors with unused rows (#5348)
* Fix most_similar for vectors with unused rows

Address issues related to the unused rows in the vector table and
`most_similar`:

* Update `most_similar()` to search only through rows that are in use
according to `key2row`.

* Raise an error when `most_similar(n=n)` is larger than the number of
vectors in the table.

* Set and restore `_unset` correctly when vectors are added or
deserialized so that new vectors are added in the correct row.

* Set data and keys to the same length in `Vocab.prune_vectors()` to
avoid spurious entries in `key2row`.

* Fix regression test using `most_similar`

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-19 16:41:26 +02:00
Sofie Van Landeghem
f00de445dd
default models defined in component decorator (#5452)
* move defaults to pipeline and use in component decorator

* black formatting

* relative import
2020-05-19 16:20:03 +02:00
adrianeboyd
70da1fd2d6
Add warning for misaligned character offset spans (#5007)
* Add warning for misaligned character offset spans

* Resolve conflict

* Filter warnings in example scripts

Filter warnings in example scripts to show warnings once, in particular
warnings about misaligned entities.

Co-authored-by: Ines Montani <ines@ines.io>
2020-05-19 16:01:18 +02:00
adrianeboyd
0061992d95
Update Polish tokenizer for UD_Polish-PDB (#5432)
Update Polish tokenizer for UD_Polish-PDB, which is a relatively major
change from the existing tokenizer. Unused exceptions files and
conflicting test cases removed.

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-19 15:59:55 +02:00
adrianeboyd
a5cd203284
Reduce stored lexemes data, move feats to lookups (#5238)
* Reduce stored lexemes data, move feats to lookups

* Move non-derivable lexemes features (`norm / cluster / prob`) to
`spacy-lookups-data` as lookups
  * Get/set `norm` in both lookups and `LexemeC`, serialize in lookups
  * Remove `cluster` and `prob` from `LexemesC`, get/set/serialize in
    lookups only
* Remove serialization of lexemes data as `vocab/lexemes.bin`
  * Remove `SerializedLexemeC`
  * Remove `Lexeme.to_bytes/from_bytes`
* Modify normalization exception loading:
  * Always create `Vocab.lookups` table `lexeme_norm` for
    normalization exceptions
  * Load base exceptions from `lang.norm_exceptions`, but load
    language-specific exceptions from lookups
  * Set `lex_attr_getter[NORM]` including new lookups table in
    `BaseDefaults.create_vocab()` and when deserializing `Vocab`
* Remove all cached lexemes when deserializing vocab to override
  existing normalizations with the new normalizations (as a replacement
  for the previous step that replaced all lexemes data with the
  deserialized data)

* Skip English normalization test

Skip English normalization test because the data is now in
`spacy-lookups-data`.

* Remove norm exceptions

Moved to spacy-lookups-data.

* Move norm exceptions test to spacy-lookups-data

* Load extra lookups from spacy-lookups-data lazily

Load extra lookups (currently for cluster and prob) lazily from the
entry point `lg_extra` as `Vocab.lookups_extra`.

* Skip creating lexeme cache on load

To improve model loading times, do not create the full lexeme cache when
loading. The lexemes will be created on demand when processing.

* Identify numeric values in Lexeme.set_attrs()

With the removal of a special case for `PROB`, also identify `float` to
avoid trying to convert it with the `StringStore`.

* Skip lexeme cache init in from_bytes

* Unskip and update lookups tests for python3.6+

* Update vocab pickle to include lookups_extra

* Update vocab serialization tests

Check strings rather than lexemes since lexemes aren't initialized
automatically, account for addition of "_SP".

* Re-skip lookups test because of python3.5

* Skip PROB/float values in Lexeme.set_attrs

* Convert is_oov from lexeme flag to lex in vectors

Instead of storing `is_oov` as a lexeme flag, `is_oov` reports whether
the lexeme has a vector.

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-19 15:59:14 +02:00
Sofie Van Landeghem
0d94737857
Feature toggle_pipes (#5378)
* make disable_pipes deprecated in favour of the new toggle_pipes

* rewrite disable_pipes statements

* update documentation

* remove bin/wiki_entity_linking folder

* one more fix

* remove deprecated link to documentation

* few more doc fixes

* add note about name change to the docs

* restore original disable_pipes

* small fixes

* fix typo

* fix error number to W096

* rename to select_pipes

* also make changes to the documentation

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-18 22:27:10 +02:00
Matthew Honnibal
333b1a308b
Adapt parser and NER for transformers (#5449)
* Draft layer for BILUO actions

* Fixes to biluo layer

* WIP on BILUO layer

* Add tests for BILUO layer

* Format

* Fix transitions

* Update test

* Link in the simple_ner

* Update BILUO tagger

* Update __init__

* Import simple_ner

* Update test

* Import

* Add files

* Add config

* Fix label passing for BILUO and tagger

* Fix label handling for simple_ner component

* Update simple NER test

* Update config

* Hack train script

* Update BILUO layer

* Fix SimpleNER component

* Update train_from_config

* Add biluo_to_iob helper

* Add IOB layer

* Add IOBTagger model

* Update biluo layer

* Update SimpleNER tagger

* Update BILUO

* Read random seed in train-from-config

* Update use of normal_init

* Fix normalization of gradient in SimpleNER

* Update IOBTagger

* Remove print

* Tweak masking in BILUO

* Add dropout in SimpleNER

* Update thinc

* Tidy up simple_ner

* Fix biluo model

* Unhack train-from-config

* Update setup.cfg and requirements

* Add tb_framework.py for parser model

* Try to avoid memory leak in BILUO

* Move ParserModel into spacy.ml, avoid need for subclass.

* Use updated parser model

* Remove incorrect call to model.initializre in PrecomputableAffine

* Update parser model

* Avoid divide by zero in tagger

* Add extra dropout layer in tagger

* Refine minibatch_by_words function to avoid oom

* Fix parser model after refactor

* Try to avoid div-by-zero in SimpleNER

* Fix infinite loop in minibatch_by_words

* Use SequenceCategoricalCrossentropy in Tagger

* Fix parser model when hidden layer

* Remove extra dropout from tagger

* Add extra nan check in tagger

* Fix thinc version

* Update tests and imports

* Fix test

* Update test

* Update tests

* Fix tests

* Fix test

Co-authored-by: Ines Montani <ines@ines.io>
2020-05-18 22:23:33 +02:00
Ines Montani
a41e28ceba
Merge pull request #5436 from ilivans/fix_errors_with_codes 2020-05-18 10:45:56 +02:00