* Replace pytokenizations with internal alignment
Replace pytokenizations with internal alignment algorithm that is
restricted to only allow differences in whitespace and capitalization.
* Rename `spacy.training.align` to `spacy.training.alignment` to contain
the `Alignment` dataclass
* Implement `get_alignments` in `spacy.training.align`
* Refactor trailing whitespace handling
* Remove unnecessary exception for empty docs
Allow a non-empty whitespace-only doc to be aligned with an empty doc
* Remove empty docs exceptions completely
* Add `cuda110` to setup.cfg and quickstart dropdown
* Switch to `pip` for pip-only packages in conda quickstart instructions
* Update zh pkuseg install message with version range and conda
* Remove `zh` from `extras_require` because the default doesn't require
additional packages
* ensure Language passes on valid examples for initialization
* fix tagger model initialization
* check for valid get_examples across components
* assume labels were added before begin_training
* fix senter initialization
* fix morphologizer initialization
* use methods to check arguments
* test textcat init, requires thinc>=8.0.0a31
* fix tok2vec init
* fix entity linker init
* use islice
* fix simple NER
* cleanup debug model
* fix assert statements
* fix tests
* throw error when adding a label if the output layer can't be resized anymore
* fix test
* add failing test for simple_ner
* UX improvements
* morphologizer UX
* assume begin_training gets a representative set and processes the labels
* remove assumptions for output of untrained NER model
* restore test for original purpose
* Update with WIP
* Update with WIP
* Update with pipeline serialization
* Update types and pipe factories
* Add deep merge, tidy up and add tests
* Fix pipe creation from config
* Don't validate default configs on load
* Update spacy/language.py
Co-authored-by: Ines Montani <ines@ines.io>
* Adjust factory/component meta error
* Clean up factory args and remove defaults
* Add test for failing empty dict defaults
* Update pipeline handling and methods
* provide KB as registry function instead of as object
* small change in test to make functionality more clear
* update example script for EL configuration
* Fix typo
* Simplify test
* Simplify test
* splitting pipes.pyx into separate files
* moving default configs to each component file
* fix batch_size type
* removing default values from component constructors where possible (TODO: test 4725)
* skip instead of xfail
* Add test for config -> nlp with multiple instances
* pipeline.pipes -> pipeline.pipe
* Tidy up, document, remove kwargs
* small cleanup/generalization for Tok2VecListener
* use DEFAULT_UPSTREAM field
* revert to avoid circular imports
* Fix tests
* Replace deprecated arg
* Make model dirs require config
* fix pickling of keyword-only arguments in constructor
* WIP: clean up and integrate full config
* Add helper to handle function args more reliably
Now also includes keyword-only args
* Fix config composition and serialization
* Improve config debugging and add visual diff
* Remove unused defaults and fix type
* Remove pipeline and factories from meta
* Update spacy/default_config.cfg
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update spacy/default_config.cfg
* small UX edits
* avoid printing stack trace for debug CLI commands
* Add support for language-specific factories
* specify the section of the config which holds the model to debug
* WIP: add Language.from_config
* Update with language data refactor WIP
* Auto-format
* Add backwards-compat handling for Language.factories
* Update morphologizer.pyx
* Fix morphologizer
* Update and simplify lemmatizers
* Fix Japanese tests
* Port over tagger changes
* Fix Chinese and tests
* Update to latest Thinc
* WIP: xfail first Russian lemmatizer test
* Fix component-specific overrides
* fix nO for output layers in debug_model
* Fix default value
* Fix tests and don't pass objects in config
* Fix deep merging
* Fix lemma lookup data registry
Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed)
* Add types
* Add Vocab.from_config
* Fix typo
* Fix tests
* Make config copying more elegant
* Fix pipe analysis
* Fix lemmatizers and is_base_form
* WIP: move language defaults to config
* Fix morphology type
* Fix vocab
* Remove comment
* Update to latest Thinc
* Add morph rules to config
* Tidy up
* Remove set_morphology option from tagger factory
* Hack use_gpu
* Move [pipeline] to top-level block and make [nlp.pipeline] list
Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them
* Fix use_gpu and resume in CLI
* Auto-format
* Remove resume from config
* Fix formatting and error
* [pipeline] -> [components]
* Fix types
* Fix tagger test: requires set_morphology?
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* step_through tests: skip instead of xfail
* test_empty_doc should be fixed with new Thinc version
* remove outdated test (there are other misaligned tests now)
* xfail reason
* fix test according to french exceptions
* clarified some skipped tests
* skip ukranian test instead of xfail
* skip instead of xfail
* skip + reason instead of xfail
* removed obsolete tests referring to removed "set_frozen" functionality
* fix test 999
* remove unused AlignmentError
* remove xfail where possible, skip otherwise
* increment thinc release for empty_doc test
* setting KB in the EL constructor, similar to how the model is passed on
* removing wikipedia example files - moved to projects
* throw an error when nlp.update is called with 2 positional arguments
* rewriting the config logic in create pipe to accomodate for other objects (e.g. KB) in the config
* update config files with new parameters
* avoid training pipeline components that don't have a model (like sentencizer)
* various small fixes + UX improvements
* small fixes
* set thinc to 8.0.0a9 everywhere
* remove outdated comment
* fix grad_clip naming
* cleaning up pretrained_vectors out of cfg
* further refactoring Model init's
* move Model building out of pipes
* further refactor to require a model config when creating a pipe
* small fixes
* making cfg in nn_parser more consistent
* fixing nr_class for parser
* fixing nn_parser's nO
* fix printing of loss
* architectures in own file per type, consistent naming
* convenience methods default_tagger_config and default_tok2vec_config
* let create_pipe access default config if available for that component
* default_parser_config
* move defaults to separate folder
* allow reading nlp from package or dir with argument 'name'
* architecture spacy.VocabVectors.v1 to read static vectors from file
* cleanup
* default configs for nel, textcat, morphologizer, tensorizer
* fix imports
* fixing unit tests
* fixes and clean up
* fixing defaults, nO, fix unit tests
* restore parser IO
* fix IO
* 'fix' serialization test
* add *.cfg to manifest
* fix example configs with additional arguments
* replace Morpohologizer with Tagger
* add IO bit when testing overfitting of tagger (currently failing)
* fix IO - don't initialize when reading from disk
* expand overfitting tests to also check IO goes OK
* remove dropout from HashEmbed to fix Tagger performance
* add defaults for sentrec
* update thinc
* always pass a Model instance to a Pipe
* fix piped_added statement
* remove obsolete W029
* remove obsolete errors
* restore byte checking tests (work again)
* clean up test
* further test cleanup
* convert from config to Model in create_pipe
* bring back error when component is not initialized
* cleanup
* remove calls for nlp2.begin_training
* use thinc.api in imports
* allow setting charembed's nM and nC
* fix for hardcoded nM/nC + unit test
* formatting fixes
* trigger build
* Improve setup.py and call into Cython directly
* Add numpy to setup_requires
* Improve clean helper
* Update setup.cfg
* Try if it builds without pyproject.toml
* Update MANIFEST.in
* Add load_from_config function
* Add train_from_config script
* Merge configs and expose via spacy.config
* Fix script
* Suggest create_evaluation_callback
* Hard-code for NER
* Fix errors
* Register command
* Add TODO
* Update train-from-config todos
* Fix imports
* Allow delayed setting of parser model nr_class
* Get train-from-config working
* Tidy up and fix scores and printing
* Hide traceback if cancelled
* Fix weighted score formatting
* Fix score formatting
* Make output_path optional
* Add Tok2Vec component
* Tidy up and add tok2vec_tensors
* Add option to copy docs in nlp.update
* Copy docs in nlp.update
* Adjust nlp.update() for set_annotations
* Don't shuffle pipes in nlp.update, decruft
* Support set_annotations arg in component update
* Support set_annotations in parser update
* Add get_gradients method
* Add get_gradients to parser
* Update errors.py
* Fix problems caused by merge
* Add _link_components method in nlp
* Add concept of 'listeners' and ControlledModel
* Support optional attributes arg in ControlledModel
* Try having tok2vec component in pipeline
* Fix tok2vec component
* Fix config
* Fix tok2vec
* Update for Example
* Update for Example
* Update config
* Add eg2doc util
* Update and add schemas/types
* Update schemas
* Fix nlp.update
* Fix tagger
* Remove hacks from train-from-config
* Remove hard-coded config str
* Calculate loss in tok2vec component
* Tidy up and use function signatures instead of models
* Support union types for registry models
* Minor cleaning in Language.update
* Make ControlledModel specifically Tok2VecListener
* Fix train_from_config
* Fix tok2vec
* Tidy up
* Add function for bilstm tok2vec
* Fix type
* Fix syntax
* Fix pytorch optimizer
* Add example configs
* Update for thinc describe changes
* Update for Thinc changes
* Update for dropout/sgd changes
* Update for dropout/sgd changes
* Unhack gradient update
* Work on refactoring _ml
* Remove _ml.py module
* WIP upgrade cli scripts for thinc
* Move some _ml stuff to util
* Import link_vectors from util
* Update train_from_config
* Import from util
* Import from util
* Temporarily add ml.component_models module
* Move ml methods
* Move typedefs
* Update load vectors
* Update gitignore
* Move imports
* Add PrecomputableAffine
* Fix imports
* Fix imports
* Fix imports
* Fix missing imports
* Update CLI scripts
* Update spacy.language
* Add stubs for building the models
* Update model definition
* Update create_default_optimizer
* Fix import
* Fix comment
* Update imports in tests
* Update imports in spacy.cli
* Fix import
* fix obsolete thinc imports
* update srsly pin
* from thinc to ml_datasets for example data such as imdb
* update ml_datasets pin
* using STATE.vectors
* small fix
* fix Sentencizer.pipe
* black formatting
* rename Affine to Linear as in thinc
* set validate explicitely to True
* rename with_square_sequences to with_list2padded
* rename with_flatten to with_list2array
* chaining layernorm
* small fixes
* revert Optimizer import
* build_nel_encoder with new thinc style
* fixes using model's get and set methods
* Tok2Vec in component models, various fixes
* fix up legacy tok2vec code
* add model initialize calls
* add in build_tagger_model
* small fixes
* setting model dims
* fixes for ParserModel
* various small fixes
* initialize thinc Models
* fixes
* consistent naming of window_size
* fixes, removing set_dropout
* work around Iterable issue
* remove legacy tok2vec
* util fix
* fix forward function of tok2vec listener
* more fixes
* trying to fix PrecomputableAffine (not succesful yet)
* alloc instead of allocate
* add morphologizer
* rename residual
* rename fixes
* Fix predict function
* Update parser and parser model
* fixing few more tests
* Fix precomputable affine
* Update component model
* Update parser model
* Move backprop padding to own function, for test
* Update test
* Fix p. affine
* Update NEL
* build_bow_text_classifier and extract_ngrams
* Fix parser init
* Fix test add label
* add build_simple_cnn_text_classifier
* Fix parser init
* Set gpu off by default in example
* Fix tok2vec listener
* Fix parser model
* Small fixes
* small fix for PyTorchLSTM parameters
* revert my_compounding hack (iterable fixed now)
* fix biLSTM
* Fix uniqued
* PyTorchRNNWrapper fix
* small fixes
* use helper function to calculate cosine loss
* small fixes for build_simple_cnn_text_classifier
* putting dropout default at 0.0 to ensure the layer gets built
* using thinc util's set_dropout_rate
* moving layer normalization inside of maxout definition to optimize dropout
* temp debugging in NEL
* fixed NEL model by using init defaults !
* fixing after set_dropout_rate refactor
* proper fix
* fix test_update_doc after refactoring optimizers in thinc
* Add CharacterEmbed layer
* Construct tagger Model
* Add missing import
* Remove unused stuff
* Work on textcat
* fix test (again :)) after optimizer refactor
* fixes to allow reading Tagger from_disk without overwriting dimensions
* don't build the tok2vec prematuraly
* fix CharachterEmbed init
* CharacterEmbed fixes
* Fix CharacterEmbed architecture
* fix imports
* renames from latest thinc update
* one more rename
* add initialize calls where appropriate
* fix parser initialization
* Update Thinc version
* Fix errors, auto-format and tidy up imports
* Fix validation
* fix if bias is cupy array
* revert for now
* ensure it's a numpy array before running bp in ParserStepModel
* no reason to call require_gpu twice
* use CupyOps.to_numpy instead of cupy directly
* fix initialize of ParserModel
* remove unnecessary import
* fixes for CosineDistance
* fix device renaming
* use refactored loss functions (Thinc PR 251)
* overfitting test for tagger
* experimental settings for the tagger: avoid zero-init and subword normalization
* clean up tagger overfitting test
* use previous default value for nP
* remove toy config
* bringing layernorm back (had a bug - fixed in thinc)
* revert setting nP explicitly
* remove setting default in constructor
* restore values as they used to be
* add overfitting test for NER
* add overfitting test for dep parser
* add overfitting test for textcat
* fixing init for linear (previously affine)
* larger eps window for textcat
* ensure doc is not None
* Require newer thinc
* Make float check vaguer
* Slop the textcat overfit test more
* Fix textcat test
* Fix exclusive classes for textcat
* fix after renaming of alloc methods
* fixing renames and mandatory arguments (staticvectors WIP)
* upgrade to thinc==8.0.0.dev3
* refer to vocab.vectors directly instead of its name
* rename alpha to learn_rate
* adding hashembed and staticvectors dropout
* upgrade to thinc 8.0.0.dev4
* add name back to avoid warning W020
* thinc dev4
* update srsly
* using thinc 8.0.0a0 !
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
Co-authored-by: Ines Montani <ines@ines.io>
* Switch from mecab-python3 to fugashi
mecab-python3 has been the best MeCab binding for a long time but it's
not very actively maintained, and since it's based on old SWIG code
distributed with MeCab there's a limit to how effectively it can be
maintained.
Fugashi is a new Cython-based MeCab wrapper I wrote. Since it's not
based on the old SWIG code it's easier to keep it current and make small
deviations from the MeCab C/C++ API where that makes sense.
* Change mecab-python3 to fugashi in setup.cfg
* Change "mecab tags" to "unidic tags"
The tags come from MeCab, but the tag schema is specified by Unidic, so
it's more proper to refer to it that way.
* Update conftest
* Add fugashi link to external deps list for Japanese
* Add arch for MishWindowEncoder
* Support mish in tok2vec and conv window >=2
* Pass new tok2vec settings from parser
* Syntax error
* Fix tok2vec setting
* Fix registration of MishWindowEncoder
* Fix receptive field setting
* Fix mish arch
* Pass more options from parser
* Support more tok2vec options in pretrain
* Require thinc 7.3
* Add docs [ci skip]
* Require thinc 7.3.0.dev0 to run CI
* Run black
* Fix typo
* Update Thinc version
Co-authored-by: Ines Montani <ines@ines.io>
* Add work in progress
* Update analysis helpers and component decorator
* Fix porting of docstrings for Python 2
* Fix docstring stuff on Python 2
* Support meta factories when loading model
* Put auto pipeline analysis behind flag for now
* Analyse pipes on remove_pipe and replace_pipe
* Move analysis to root for now
Try to find a better place for it, but it needs to go for now to avoid circular imports
* Simplify decorator
Don't return a wrapped class and instead just write to the object
* Update existing components and factories
* Add condition in factory for classes vs. functions
* Add missing from_nlp classmethods
* Add "retokenizes" to printed overview
* Update assigns/requires declarations of builtins
* Only return data if no_print is enabled
* Use multiline table for overview
* Don't support Span
* Rewrite errors/warnings and move them to spacy.errors
* Only import pkg_resources where it's needed
Apparently it's really slow
* Use importlib_metadata for entry points
* Revert "Only import pkg_resources where it's needed"
This reverts commit 5ed8c03afa.
* Revert "Revert "Only import pkg_resources where it's needed""
This reverts commit 8b30b57957.
* Revert "Use importlib_metadata for entry points"
This reverts commit 9f071f5c40.
* Revert "Revert "Use importlib_metadata for entry points""
This reverts commit 02e12a17ec.
* Skip test that weirdly hangs
* Fix hanging test by using global
* Move test
* Allow default in Lookups.get_table
* Start with blank tables in Lookups.from_bytes
* Refactor lemmatizer to hold instance of Lookups
* Get lookups table within the lemmatization methods to make sure it references the correct table (even if the table was replaced or modified, e.g. when loading a model from disk)
* Deprecate other arguments on Lemmatizer.__init__ and expect Lookups for consistency
* Remove old and unsupported Lemmatizer.load classmethod
* Refactor language-specific lemmatizers to inherit as much as possible from base class and override only what they need
* Update tests and docs
* Fix more tests
* Fix lemmatizer
* Upgrade pytest to try and fix weird CI errors
* Try pytest 4.6.5
* Add default to util.get_entry_point
* Tidy up entry points
* Read lookups from entry points
* Remove lookup tables and related tests
* Add lookups install option
* Remove lemmatizer tests
* Remove logic to process language data files
* Update setup.cfg
* Tidy up and modernize setup and config
* Update setup.cfg
* Re-add pyproject.toml
* Delete .flake8
* Move static meta from about to setup.cfg
* Update setup.cfg
Co-Authored-By: Matthew Honnibal <honnibal+gh@gmail.com>
