Commit Graph

200 Commits

Author SHA1 Message Date
Matthew Honnibal
f52249fe2e Fix data augmentation 2020-09-29 23:40:54 +02:00
Matthew Honnibal
14c4da547f Try to fix augmentation 2020-09-29 23:08:56 +02:00
Ines Montani
df8dd91b6f Merge branch 'develop' into fix/default-corpus-values 2020-09-29 22:55:39 +02:00
Ines Montani
ad6d40d028 Add logging 2020-09-29 22:53:14 +02:00
Ines Montani
1aeef3bfbb Make corpus paths default to None and improve errors 2020-09-29 22:33:46 +02:00
Ines Montani
fa47f87924 Tidy up and auto-format 2020-09-29 21:39:28 +02:00
Ines Montani
d3c63b7965 Merge branch 'develop' into feature/prepare 2020-09-29 20:53:05 +02:00
Ines Montani
2be80379ec Fix small issues, resolve_dot_names and debug model 2020-09-29 20:38:35 +02:00
Ines Montani
fd594cfb9b Tighten up format 2020-09-29 16:47:55 +02:00
Ines Montani
978ab54a84 Fix logging 2020-09-29 16:22:41 +02:00
Ines Montani
aa2a6882d0 Fix logging 2020-09-29 16:08:39 +02:00
Ines Montani
63d1598137 Simplify config use in Language.initialize 2020-09-29 16:05:48 +02:00
Ines Montani
612bbf85ab Update initialize.py 2020-09-29 12:14:47 +02:00
Ines Montani
42f0e4c946 Clean up 2020-09-29 12:14:08 +02:00
Ines Montani
78396d137f Integrate initialize settings 2020-09-29 11:57:08 +02:00
Ines Montani
4925ad760a Add init vectors 2020-09-29 10:58:50 +02:00
Ines Montani
ff9a63bfbd begin_training -> initialize 2020-09-28 21:35:09 +02:00
Ines Montani
046f655d86 Fix error 2020-09-28 21:17:45 +02:00
Ines Montani
a139fe672b Fix typos and refactor CLI logging 2020-09-28 21:17:10 +02:00
Ines Montani
2e9c9e74af Fix config resolution and interpolation
TODO: auto-interpolate in Thinc if config is dict (i.e. likely subsection)
2020-09-28 15:34:00 +02:00
Ines Montani
822ea4ef61 Refactor CLI 2020-09-28 15:09:59 +02:00
Ines Montani
d5155376fd Update vocab init 2020-09-28 11:30:18 +02:00
Matthew Honnibal
a976da168c
Support data augmentation in Corpus (#6155)
* Support data augmentation in Corpus

* Note initial docs for data augmentation

* Add augmenter to quickstart

* Fix flake8

* Format

* Fix test

* Update spacy/tests/training/test_training.py

* Improve data augmentation arguments

* Update templates

* Move randomization out into caller

* Refactor

* Update spacy/training/augment.py

* Update spacy/tests/training/test_training.py

* Fix augment

* Fix test
2020-09-28 03:03:27 +02:00
Matthew Honnibal
13b1605ee6 Add init script 2020-09-28 01:08:49 +02:00
Matthew Honnibal
26afd3bd90 Fix iteration order 2020-09-25 21:47:22 +02:00
Matthew Honnibal
3d8388969e Sort paths for cache consistency 2020-09-25 19:07:26 +02:00
Sofie Van Landeghem
009ba14aaf
Fix pretraining in train script (#6143)
* update pretraining API in train CLI

* bump thinc to 8.0.0a35

* bump to 3.0.0a26

* doc fixes

* small doc fix
2020-09-25 15:47:10 +02:00
Matthew Honnibal
93d7ff309f Remove print 2020-09-24 21:05:27 +02:00
Matthew Honnibal
2abb4ba9db
Make a pre-check to speed up alignment cache (#6139)
* Dirty trick to fast-track alignment cache

* Improve alignment cache check

* Fix header

* Fix align cache

* Fix align logic
2020-09-24 18:13:39 +02:00
Ines Montani
58dde293ce
Merge pull request #6089 from adrianeboyd/feature/doc-ents-v3-2 2020-09-24 14:44:42 +02:00
Ines Montani
f69fea8b25 Improve error handling around non-number scores 2020-09-24 11:29:07 +02:00
Ines Montani
4eb39b5c43 Fix logging 2020-09-24 11:04:35 +02:00
svlandeg
20b0ec5dcf avoid logging performance of frozen components 2020-09-23 10:37:12 +02:00
Ines Montani
ae5dacf75f Tidy up and add types 2020-09-23 10:14:34 +02:00
svlandeg
4a56ea72b5 fallbacks for old names 2020-09-23 09:15:07 +02:00
Adriane Boyd
535842e483
Merge branch 'develop' into feature/doc-ents-v3-2 2020-09-22 13:45:50 +02:00
svlandeg
b556a10808 rename converts in_to_out 2020-09-22 11:50:19 +02:00
Ines Montani
67fbcb3da5 Tidy up tests and docs 2020-09-21 20:43:54 +02:00
Adriane Boyd
177df15d89 Implement Doc.set_ents 2020-09-21 15:54:05 +02:00
Adriane Boyd
bc02e86494 Extend Doc.__init__ with additional annotation
Mostly copying from `spacy.tests.util.get_doc`, add additional kwargs to
`Doc.__init__` to initialize the most common doc/token values.
2020-09-21 13:36:24 +02:00
Adriane Boyd
8b650f3a78 Modify setting missing and blocked entity tokens
In order to make it easier to construct `Doc` objects as training data,
modify how missing and blocked entity tokens are set to prioritize
setting `O` and missing entity tokens for training purposes over setting
blocked entity tokens.

* `Doc.ents` setter sets tokens outside entity spans to `O` regardless
of the current state of each token

* For `Doc.ents`, setting a span with a missing label sets the `ent_iob`
to missing instead of blocked

* `Doc.block_ents(spans)` marks spans as hard `O` for use with the
`EntityRecognizer`
2020-09-17 21:27:42 +02:00
Adriane Boyd
7e4cd7575c
Refactor Docs.is_ flags (#6044)
* Refactor Docs.is_ flags

* Add derived `Doc.has_annotation` method

  * `Doc.has_annotation(attr)` returns `True` for partial annotation

  * `Doc.has_annotation(attr, require_complete=True)` returns `True` for
    complete annotation

* Add deprecation warnings to `is_tagged`, `is_parsed`, `is_sentenced`
and `is_nered`

* Add `Doc._get_array_attrs()`, which returns a full list of `Doc` attrs
for use with `Doc.to_array`, `Doc.to_bytes` and `Doc.from_docs`. The
list is the `DocBin` attributes list plus `SPACY` and `LENGTH`.

Notes on `Doc.has_annotation`:

* `HEAD` is converted to `DEP` because heads don't have an unset state

* Accept `IS_SENT_START` as a synonym of `SENT_START`

Additional changes:

* Add `NORM`, `ENT_ID` and `SENT_START` to default attributes for
`DocBin`

* In `Doc.from_array()` the presence of `DEP` causes `HEAD` to override
`SENT_START`

* In `Doc.from_array()` using `attrs` other than
`Doc._get_array_attrs()` (i.e., a user's custom list rather than our
default internal list) with both `HEAD` and `SENT_START` shows a warning
that `HEAD` will override `SENT_START`

* `set_children_from_heads` does not require dependency labels to set
sentence boundaries and sets `sent_start` for all non-sentence starts to
`-1`

* Fix call to set_children_form_heads

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-09-17 00:14:01 +02:00
svlandeg
7677e5c0e2 fix wandb logger when calling multiple times from same script 2020-09-15 12:56:33 +02:00
Ines Montani
154752f9c2 Update docs and consistency [ci skip] 2020-09-15 00:32:49 +02:00
Matthew Honnibal
ae15fa9688 Fix iob converter 2020-09-14 21:02:18 +02:00
Ines Montani
61a4ef0b46 Fix syntax error 2020-09-13 19:23:09 +02:00
Matthew Honnibal
b693d2d224 Fix speed report in table 2020-09-13 17:39:31 +02:00
Matthew Honnibal
54c40223a1
Improve v3 pretrain command (#6040)
* Starts to run

* Update pretrain script

* Update corpus

* Update pretrain schema

* Remove outdated test

* Make JsonlTexts produce Example objects.
2020-09-13 14:05:05 +02:00
Sofie Van Landeghem
e92e850c72
Raise if empty examples (#6052)
* raise error if no valid Example objects were found during initialization

* fix max_length parameter

* remove commit from other branch

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-09-12 21:01:53 +02:00
Sofie Van Landeghem
8e7557656f
Renaming gold & annotation_setter (#6042)
* version bump to 3.0.0a16

* rename "gold" folder to "training"

* rename 'annotation_setter' to 'set_extra_annotations'

* formatting
2020-09-09 10:31:03 +02:00