Commit Graph

2132 Commits

Author SHA1 Message Date
Sofie Van Landeghem
0a923a7915
Tagger robustness (#6580)
* require labels in taggers

* ensure tagger works with incomplete data
2020-12-18 18:51:47 +08:00
Adriane Boyd
1ddf2f39c7
Switch converters to generator functions (#6547)
* Switch converters to generator functions

To reduce the memory usage when converting large corpora, refactor the
convert methods to be generator functions.

* Update tests
2020-12-15 16:47:16 +08:00
Matthew Honnibal
8656a08777
Add beam_parser and beam_ner components for v3 (#6369)
* Get basic beam tests working

* Get basic beam tests working

* Compile _beam_utils

* Remove prints

* Test beam density

* Beam parser seems to train

* Draft beam NER

* Upd beam

* Add hypothesis as dev dependency

* Implement missing is-gold-parse method

* Implement early update

* Fix state hashing

* Fix test

* Fix test

* Default to non-beam in parser constructor

* Improve oracle for beam

* Start refactoring beam

* Update test

* Refactor beam

* Update nn

* Refactor beam and weight by cost

* Update ner beam settings

* Update test

* Add __init__.pxd

* Upd test

* Fix test

* Upd test

* Fix test

* Remove ring buffer history from StateC

* WIP change arc-eager transitions

* Add state tests

* Support ternary sent start values

* Fix arc eager

* Fix NER

* Pass oracle cut size for beam

* Fix ner test

* Fix beam

* Improve StateC.clone

* Improve StateClass.borrow

* Work directly with StateC, not StateClass

* Remove print statements

* Fix state copy

* Improve state class

* Refactor parser oracles

* Fix arc eager oracle

* Fix arc eager oracle

* Use a vector to implement the stack

* Refactor state data structure

* Fix alignment of sent start

* Add get_aligned_sent_starts method

* Add test for ae oracle when bad sentence starts

* Fix sentence segment handling

* Avoid Reduce that inserts illegal sentence

* Update preset SBD test

* Fix test

* Remove prints

* Fix sent starts in Example

* Improve python API of StateClass

* Tweak comments and debug output of arc eager

* Upd test

* Fix state test

* Fix state test
2020-12-13 09:08:32 +08:00
Ines Montani
9d32e839d3 Merge branch 'develop' into feature/init-config-cpu-gpu 2020-12-10 08:50:53 +11:00
Ines Montani
f2571b5ec4
Merge pull request #6444 from adrianeboyd/chore/update-develop-from-master 2020-12-09 13:09:58 +11:00
Ines Montani
90171f2031
Merge pull request #6528 from svlandeg/feature/pipe_fill_config 2020-12-09 12:01:22 +11:00
Ines Montani
dfaef27f90
Merge pull request #6503 from adrianeboyd/feature/lemmatizer-rule-warning-pos
Warn on empty POS for the rule-based lemmatizer
2020-12-09 11:34:16 +11:00
Ines Montani
b85bd63eca Fix test 2020-12-09 11:24:01 +11:00
Ines Montani
febf71af28 Fix test 2020-12-09 11:23:07 +11:00
Ines Montani
1980203229 Merge branch 'master' into pr/6444 2020-12-09 11:09:40 +11:00
Ines Montani
05a2812ae0 Merge branch 'develop' into pr/6444 2020-12-09 11:04:03 +11:00
Sofie Van Landeghem
cfc72c2995
Bugfix multi-label textcat reproducibility (#6481)
* add test for multi-label textcat reproducibility

* remove positive_label

* fix lengths dtype

* fix comments

* remove comment that we should not have forgotten :-)
2020-12-09 06:29:15 +08:00
svlandeg
8f8a7f1733 returning config in init_config 2020-12-08 17:37:20 +01:00
Sofie Van Landeghem
2c27093c5f
require_cpu functionality (#6336)
* add require_cpu from Thinc 8.0.0rc2

* add docs

* fix test if cupy is not installed
2020-12-08 14:42:40 +08:00
Sofie Van Landeghem
f98a04434a
pretrain architectures (#6451)
* define new architectures for the pretraining objective

* add loss function as attr of the omdel

* cleanup

* cleanup

* shorten name

* fix typo

* remove unused error
2020-12-08 14:41:03 +08:00
Adriane Boyd
29b058ebdc
Fix spacy when retokenizing cases with affixes (#6475)
Preserve `token.spacy` corresponding to the span end token in the
original doc rather than adjusting for the current offset.

* If not modifying in place, this checks in the original document
(`doc.c` rather than `tokens`).
* If modifying in place, the document has not been modified past the
current span start position so the value at the current span end
position is valid.
2020-12-08 14:25:56 +08:00
Adriane Boyd
4448680750
Fix alignment for 1-to-1 tokens and lowercasing (#6476)
* When checking for token alignments, check not only that the tokens are
identical but that the character positions are both at the start of a
token.

  It's possible for the tokens to be identical even though the two
tokens aren't aligned one-to-one in a case like `["a'", "''"]` vs.
`["a", "''", "'"]`, where the middle tokens are identical but should not
be aligned on the token level at character position 2 since it's the
start of one token but the middle of another.

* Use the lowercased version of the token texts to create the
character-to-token alignment because lowercasing can change the string
length (e.g., for `İ`, see the not-a-bug bug report:
https://bugs.python.org/issue34723)
2020-12-08 14:25:16 +08:00
Adriane Boyd
d70950605c Warn on empty POS for the rule-based lemmatizer
Add a warning to the rule-based lemmatizer for any tokens without POS
annotation.
2020-12-04 11:46:15 +01:00
Sofie Van Landeghem
d6c616a125
Fixes in test suite (#6457)
* fix slow test for textcat readers

* cleanup test_issue5551

* add explicit score weight

* cleanup
2020-12-02 12:57:08 +01:00
Adriane Boyd
53c0fb7431
Only set NORM on Token in retokenizer (#6464)
* Only set NORM on Token in retokenizer

Instead of setting `NORM` on both the token and lexeme, set `NORM` only
on the token.

The retokenizer tries to set all possible attributes with
`Token/Lexeme.set_struct_attr` so that it doesn't have to enumerate
which attributes are available for each. `NORM` is the only attribute
that's stored on both and for most cases it doesn't make sense to set
the global norms based on a individual retokenization. For lexeme-only
attributes like `IS_STOP` there's no way to avoid the global side
effects, but I think that `NORM` would be better only on the token.

* Fix test
2020-11-30 09:35:42 +08:00
Adriane Boyd
03ae77e603
Add SPACY as a Matcher attribute (#6463) 2020-11-30 09:34:50 +08:00
Adriane Boyd
724831b066 Merge remote-tracking branch 'upstream/master' into chore/update-develop-from-master
* Update Macedonian for v3
* Update Turkish for v3
2020-11-25 11:49:34 +01:00
Sofie Van Landeghem
2af31a8c8d
Bugfix textcat reproducibility on GPU (#6411)
* add seed argument to ParametricAttention layer

* bump thinc to 7.4.3

* set thinc version range

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2020-11-23 12:29:35 +01:00
Adriane Boyd
320a8b1481
Add ent_id_ to strings serialized with Doc (#6353) 2020-11-10 20:16:07 +08:00
Adriane Boyd
a7e7d6c6c9
Ignore misaligned in Morphologizer.get_loss (#6363)
Fix bug where `Morphologizer.get_loss` treated misaligned annotation as
`EMPTY_MORPH` rather than ignoring it. Remove unneeded default `EMPTY_MORPH`
mappings.
2020-11-10 20:15:09 +08:00
Ines Montani
363ac73c72 Update docs [ci skip] 2020-11-09 12:43:26 +08:00
Adriane Boyd
31de700b0f
Fix on_match callback and remove empty patterns (#6312)
For the `DependencyMatcher`:

* Fix on_match callback so that it is called once per matched pattern
* Fix results so that patterns with empty match lists are not returned
2020-11-05 09:16:26 +01:00
Adriane Boyd
1c4df8fd09
Replace pytokenizations with internal alignment (#6293)
* Replace pytokenizations with internal alignment

Replace pytokenizations with internal alignment algorithm that is
restricted to only allow differences in whitespace and capitalization.

* Rename `spacy.training.align` to `spacy.training.alignment` to contain
the `Alignment` dataclass
* Implement `get_alignments` in `spacy.training.align`

* Refactor trailing whitespace handling

* Remove unnecessary exception for empty docs

Allow a non-empty whitespace-only doc to be aligned with an empty doc

* Remove empty docs exceptions completely
2020-11-03 16:24:38 +01:00
Adriane Boyd
a4b32b9552
Handle missing reference values in scorer (#6286)
* Handle missing reference values in scorer

Handle missing values in reference doc during scoring where it is
possible to detect an unset state for the attribute. If no reference
docs contain annotation, `None` is returned instead of a score. `spacy
evaluate` displays `-` for missing scores and the missing scores are
saved as `None`/`null` in the metrics.

Attributes without unset states:

* `token.head`: relies on `token.dep` to recognize unset values
* `doc.cats`: unable to handle missing annotation

Additional changes:

* add optional `has_annotation` check to `score_scans` to replace
`doc.sents` hack
* update `score_token_attr_per_feat` to handle missing and empty morph
representations
* fix bug in `Doc.has_annotation` for normalization of `IS_SENT_START`
vs. `SENT_START`

* Fix import

* Update return types
2020-11-03 15:47:18 +01:00
Adriane Boyd
5d2cb86c34
Fix on_match callback for DependencyMatcher (#6313)
Fix `DependencyMatcher` so that the callback is called only once per
match.
2020-10-31 12:20:27 +01:00
Adriane Boyd
45c9a68828
Identify final Matcher pattern node by quantifier (#6317)
Modify the internal pattern representation in `Matcher` patterns to
identify the final ID state using a unique quantifier rather than a
combination of other attributes.

It was insufficient to identify the final ID node based on an
uninitialized `quantifier` (coincidentally being the same as the `ZERO`)
with `nr_attr` as 0. (In addition, it was potentially bug-prone that
`nr_attr` was set to 0 even though attrs were allocated.)

In the case of `{"OP": "!"}` (a valid, if pointless, pattern), `nr_attr`
is 0 and the quantifier is ZERO, so the previous methods for
incrementing to the ID node at the end of the pattern weren't able to
distinguish the final ID node from the `{"OP": "!"}` pattern.
2020-10-31 12:18:48 +01:00
Duygu Altinok
0e55f806dd
Turkish tokenization improvements (#6268)
* added single and paired orth variants

* added token match

* added long text tokenization test

* inverted init

* normalized lemmas to lowercase

* more abbrevs

* tests for ordinals and abbrevs

* separated period abbvrevs to another list

* fiex typo

* added ordinal and abbrev tests

* added number tests for dates

* minor refinement

* added inflected abbrevs regex

* added percentage and inflection

* cosmetics

* added token match

* added url inflection tests

* excluded url tokens from custom pattern

* removed url match import
2020-10-29 09:43:17 +01:00
Sofie Van Landeghem
75a202ce65
TextCat updates and fixes (#6263)
* small fix in example imports

* throw error when train_corpus or dev_corpus is not a string

* small fix in custom logger example

* limit macro_auc to labels with 2 annotations

* fix typo

* also create parents of output_dir if need be

* update documentation of textcat scores

* refactor TextCatEnsemble

* fix tests for new AUC definition

* bump to 3.0.0a42

* update docs

* rename to spacy.TextCatEnsemble.v2

* spacy.TextCatEnsemble.v1 in legacy

* cleanup

* small fix

* update to 3.0.0rc2

* fix import that got lost in merge

* cursed IDE

* fix two typos
2020-10-18 14:50:41 +02:00
Jan Margeta
1ad2213349 Fix TokenPatternSchema pattern field validation
Empty pattern field should be considered invalid

This is fixed by replacing minItems with min_items
as described in Pydantic docs:
https://pydantic-docs.helpmanual.io/usage/schema/
2020-10-16 00:41:21 +02:00
Borijan Georgievski
2311192ba1
Include Macedonian language (#6230)
* Include Macedonian language

* Fix indentation at char_classes.py

* Fix indentation at char_classes.py

* Add Macedonian tests, update lex_attrs and char_classes

* Import unicode literals for python 2
2020-10-15 15:55:01 +02:00
Ines Montani
b1d568a4df Tidy up tests 2020-10-15 10:20:21 +02:00
Ines Montani
d165af26be Auto-format [ci skip] 2020-10-15 10:08:53 +02:00
Ines Montani
5d62499266 Fix tests 2020-10-15 09:29:15 +02:00
Ines Montani
178760855f Merge branch 'develop' into master-tmp 2020-10-15 09:06:03 +02:00
svlandeg
0796401c19 call NumpyOps instead of get_current_ops() 2020-10-14 16:55:00 +02:00
svlandeg
e94a21638e adding tests for trained models to ensure predict reproducibility 2020-10-13 21:07:13 +02:00
svlandeg
ede979d42f formattting 2020-10-13 18:53:17 +02:00
svlandeg
ff83bfae3f naming 2020-10-13 18:52:37 +02:00
svlandeg
6ccacff54e add tests for individual spacy layers 2020-10-13 18:50:07 +02:00
svlandeg
c23041ae60 component tests single or multiple prediction 2020-10-13 16:26:53 +02:00
svlandeg
3a505e7e14 small edit to ensure the new word was indeed new 2020-10-10 21:05:28 +02:00
svlandeg
68d79796c6 add test for vocab after serializing KB 2020-10-10 20:59:48 +02:00
Ines Montani
539b0c10da Tidy up and auto-format 2020-10-10 19:14:48 +02:00
Ines Montani
bfa3931c9d
Revert added_strings change (#6236) 2020-10-10 18:55:07 +02:00
Ines Montani
525f798841 Fix typo in test 2020-10-09 18:00:21 +02:00
Ines Montani
b7cb9d95e4
Merge pull request #6229 from svlandeg/bugfix/disabled 2020-10-09 16:05:11 +02:00
Ines Montani
9fb3244672
Merge pull request #6231 from adrianeboyd/feature/include-static-vectors 2020-10-09 15:54:52 +02:00
Adriane Boyd
727370c633 Remove Span._recalculate_indices
Remove `Span._recalculate_indices`, which is a remnant from the
deprecated `Span.merge`.
2020-10-09 14:42:51 +02:00
svlandeg
06b9d213fd formatting 2020-10-09 12:19:47 +02:00
Ines Montani
4771a10503 Make test more explicit [ci skip] 2020-10-09 12:15:26 +02:00
Ines Montani
cc3646b06c Add xfailing test for peculiar spans failure [ci skip] 2020-10-09 12:10:25 +02:00
svlandeg
8316bc7d4a bugfix DisabledPipes 2020-10-09 12:06:20 +02:00
Adriane Boyd
39aabf50ab Also rename to include_static_vectors in CharEmbed 2020-10-09 11:54:48 +02:00
Florijan Stamenković
18f5c309dc Fix Issue 6207 (#6208)
* Regression test for issue 6207

* Fix issue 6207

* Sign contributor agreement

* Minor adjustments to test

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2020-10-09 10:14:40 +02:00
Duygu Altinok
80fb1bffc9 Ordinal numbers for Turkish (#6142)
* minor ordinal number addition

* fixed typo

* added corresponding lexical test
2020-10-09 10:13:15 +02:00
Duygu Altinok
2fad279a44 Turkish language syntax iterators (#6191)
* added tr_vocab to config

* basic test

* added syntax iterator to Turkish lang class

* first version for Turkish syntax iter, without flat

* added simple tests with nmod, amod, det

* more tests to amod and nmod

* separated noun chunks and parser test

* rearrangement after nchunk parser separation

* added recursive NPs

* tests with complicated recursive NPs

* tests with conjed NPs

* additional tests for conj NP

* small modification for shaving off conj from NP

* added tests with flat

* more tests with flat

* added examples with flats conjed

* added inner func for flat trick

* corrected parse

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2020-10-09 10:10:22 +02:00
Sofie Van Landeghem
d093d6343b
TrainablePipe (#6213)
* rename Pipe to TrainablePipe

* split functionality between Pipe and TrainablePipe

* remove unnecessary methods from certain components

* cleanup

* hasattr(component, "pipe") should be sufficient again

* remove serialization and vocab/cfg from Pipe

* unify _ensure_examples and validate_examples

* small fixes

* hasattr checks for self.cfg and self.vocab

* make is_resizable and is_trainable properties

* serialize strings.json instead of vocab

* fix KB IO + tests

* fix typos

* more typos

* _added_strings as a set

* few more tests specifically for _added_strings field

* bump to 3.0.0a36
2020-10-08 21:33:49 +02:00
Ines Montani
8ff73f04db Fix morph in Doc.to_json 2020-10-08 14:44:35 +02:00
Ines Montani
064575d79d
Merge pull request #6216 from svlandeg/feature/nel-initialize 2020-10-08 11:14:12 +02:00
svlandeg
eaf5c265cb set_kb method for entity_linker 2020-10-08 10:34:01 +02:00
Ines Montani
010956d493 Clear rule-based components on initialize 2020-10-08 09:51:31 +02:00
Sofie Van Landeghem
2998131416
Reproducibility for TextCat and Tok2Vec (#6218)
* ensure fixed seed in HashEmbed layers

* forgot about the joys of python 2
2020-10-08 00:43:46 +02:00
svlandeg
efedccea8d fix tests 2020-10-07 15:29:52 +02:00
svlandeg
6b8bdb2d39 add init_config to nlp.create_pipe 2020-10-07 14:58:16 +02:00
Duygu Altinok
7e821c2776
Turkish language syntax iterators (#6191)
* added tr_vocab to config

* basic test

* added syntax iterator to Turkish lang class

* first version for Turkish syntax iter, without flat

* added simple tests with nmod, amod, det

* more tests to amod and nmod

* separated noun chunks and parser test

* rearrangement after nchunk parser separation

* added recursive NPs

* tests with complicated recursive NPs

* tests with conjed NPs

* additional tests for conj NP

* small modification for shaving off conj from NP

* added tests with flat

* more tests with flat

* added examples with flats conjed

* added inner func for flat trick

* corrected parse

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2020-10-07 11:07:52 +02:00
Duygu Altinok
b95a11dd95
Ordinal numbers for Turkish (#6142)
* minor ordinal number addition

* fixed typo

* added corresponding lexical test
2020-10-07 10:25:37 +02:00
Rahul Gupta
1a00bff06d
Hindi: Adds tests for lexical attributes (norm and like_num) (#5829)
* Hindi: Adds tests for lexical attributes (norm and like_num)

* Signs and sdds the contributor agreement

* Add ordinal numbers to be tagged as like_num

* Adds alternate pronunciation for 31 and 39
2020-10-07 10:23:32 +02:00
Sofie Van Landeghem
fff3f8ccfa
Fix packaging pin (#6212)
* pin packaging to >=20.0

* ignore spacy-pkuseg in requirements unit test
2020-10-06 14:16:05 +02:00
Matthew Honnibal
cfb9770a94
Fix empty input into StaticVectors layer (#6211)
* Add test for empty doc(s)

* Fix empty check in staticvectors

* Remove xfail

* Update spacy/ml/staticvectors.py
2020-10-06 14:15:41 +02:00
Florijan Stamenković
9db670b996
Fix Issue 6207 (#6208)
* Regression test for issue 6207

* Fix issue 6207

* Sign contributor agreement

* Minor adjustments to test

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2020-10-06 11:17:37 +02:00
Ines Montani
568e12215d
Merge pull request #6206 from svlandeg/fix/patterns-init 2020-10-06 10:27:23 +02:00
svlandeg
ff9ac39c88 read entity_ruler patterns with srsly.read_jsonl.v1 2020-10-05 22:50:14 +02:00
Ines Montani
126268ce50 Auto-format [ci skip] 2020-10-05 21:58:18 +02:00
Ines Montani
181039bd17
Merge pull request #6205 from explosion/feature/embed-features 2020-10-05 21:49:10 +02:00
Ines Montani
568617af58
Merge pull request #6202 from explosion/feature/project-spacy-version 2020-10-05 21:40:52 +02:00
Ines Montani
6abfc2911d
Merge pull request #6203 from adrianeboyd/feature/zh-spacy-pkuseg 2020-10-05 21:35:57 +02:00
Matthew Honnibal
91d0fbb588 Fix test 2020-10-05 21:13:53 +02:00
Matthew Honnibal
b392d48e76 Fix test 2020-10-05 20:17:07 +02:00
Matthew Honnibal
db84d175c3 Fix test 2020-10-05 19:59:30 +02:00
Matthew Honnibal
6dcc4a0ba6 Simplify MultiHashEmbed signature 2020-10-05 19:57:45 +02:00
Matthew Honnibal
7d93575f35 spacy/tests/ 2020-10-05 15:28:12 +02:00
Matthew Honnibal
f4ca9a39cb spacy/tests/ 2020-10-05 15:27:06 +02:00
Matthew Honnibal
f2f1deca66 spacy/tests/ 2020-10-05 15:24:33 +02:00
Matthew Honnibal
8ec79ad3fa Allow configuration of MultiHashEmbed features
Update arguments to MultiHashEmbed layer so that the attributes can be
controlled. A kind of tricky scheme is used to allow optional
specification of the rows. I think it's an okay balance between
flexibility and convenience.
2020-10-05 15:22:00 +02:00
Adriane Boyd
5d19dfc9d3 Update Chinese tokenizer for spacy-pkuseg fork 2020-10-05 14:21:53 +02:00
Ines Montani
6958510bda Include spaCy version check in project CLI 2020-10-05 13:53:07 +02:00
Ines Montani
20f2a17a09 Merge test_misc and test_util 2020-10-05 13:45:57 +02:00
Ines Montani
1c641e41c3 Remove unused import [ci skip] 2020-10-05 11:50:11 +02:00
Adriane Boyd
b0b93854cb Update ru/uk lemmatizers for new nlp.initialize 2020-10-05 09:27:16 +02:00
Ines Montani
549758f67d Adjust test for now 2020-10-04 23:16:09 +02:00
Ines Montani
3c36a57e84
Update data augmenters (#6196)
* Draft lower-case augmenter

* Make warning a debug log

* Update lowercase augmenter, docs and tests

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-10-04 17:46:29 +02:00
Ines Montani
496228771d
Merge pull request #6194 from explosion/master-tmp 2020-10-04 15:25:41 +02:00
Ines Montani
0307a228c8
Merge pull request #6193 from explosion/fix/adjust-pipe-init
Adjust [initialize.components] on Language.remove_pipe and Language.rename_pipe
2020-10-04 15:20:54 +02:00
Ines Montani
59deeb7da6 Merge branch 'develop' into master-tmp 2020-10-04 14:52:20 +02:00
Ines Montani
8f018e47f8 Adjust [initialize.components] on Language.remove_pipe and Language.rename_pipe 2020-10-04 14:43:45 +02:00