Commit Graph

815 Commits

Author SHA1 Message Date
Ines Montani
a570c304df Update quickstart, template and docs 2020-08-15 14:50:29 +02:00
Ines Montani
fdcde9b0bf Add init fill-config 2020-08-14 16:49:26 +02:00
Ines Montani
8128e5eb35 Replace lexeme_norm warning with logging 2020-08-14 15:00:52 +02:00
Ines Montani
37814b608d Remove env_opt and simplfy default Optimizer 2020-08-14 14:59:54 +02:00
Ines Montani
ab1d165bba Pass optimizer defined in config to resume/begin_training
Otherwise, this would create a default optimizer, which isn't what we want?
2020-08-14 14:59:22 +02:00
Ines Montani
67cc39af7f Update Thinc and include section order 2020-08-14 14:06:22 +02:00
Ines Montani
88b0a96801 Update for new Thinc and adjust config 2020-08-13 17:38:30 +02:00
Ines Montani
950832f087
Tidy up pipes (#5906)
* Tidy up pipes

* Fix init, defaults and raise custom errors

* Update docs

* Update docs [ci skip]

* Apply suggestions from code review

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>

* Tidy up error handling and validation, fix consistency

* Simplify get_examples check

* Remove unused import [ci skip]

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-11 23:29:31 +02:00
Ines Montani
d5c78c7a34 Update docs and fix consistency 2020-08-09 22:31:52 +02:00
Ines Montani
1d01d89b79 Update CLI docs and evaluate command [ci skip] 2020-08-07 14:40:58 +02:00
Ines Montani
913d21f0a3
Merge pull request #5882 from explosion/feature/raise-from
Use "raise ... from" in custom errors for better tracebacks
2020-08-06 00:35:26 +02:00
Ines Montani
06e80d95cd
Sync develop with nightly docs state (#5883)
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2020-08-06 00:28:14 +02:00
Ines Montani
d92954ac1d
Merge pull request #5881 from explosion/feature/better-error-model-shortcuts 2020-08-06 00:13:35 +02:00
Ines Montani
56c17973aa Use "raise ... from" in custom errors for better tracebacks 2020-08-05 23:53:21 +02:00
Ines Montani
5cc0d89fad
Simplify config overrides in CLI and deserialization (#5880) 2020-08-05 23:35:09 +02:00
Ines Montani
2a1fa86a0d Add better error for failed model shortcut loading 2020-08-05 23:10:29 +02:00
Ines Montani
586d695775 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-08-05 16:01:11 +02:00
Ines Montani
e68459296d Tidy up and auto-format 2020-08-05 16:00:59 +02:00
Matthew Honnibal
50c0e49741 Fix train CLI 2020-08-05 15:40:47 +02:00
Ines Montani
b795f02fbd
Allow adding pipeline components from source model (#5857)
* Allow adding pipeline components from source model

* Config: name -> component

* Improve error messages

* Fix error and test

* Add frozen components and exclude logic

* Remove exclude from Language.evaluate

* Init sourced components with current vocab

* Fix error codes
2020-08-04 23:39:19 +02:00
Matthew Honnibal
ecb3c4e8f4
Create corpus iterator and batcher from registry during training (#5865)
* Move batchers into their own module (and registry)

* Update CLI

* Update Corpus and batcher

* Update tests

* Update one config

* Merge 'evaluation' block back under [training]

* Import batchers in gold __init__

* Fix batchers

* Update config

* Update schema

* Update util

* Don't assume train and dev are actually paths

* Update onto-joint config

* Fix missing import

* Format

* Format

* Update spacy/gold/corpus.py

Co-authored-by: Ines Montani <ines@ines.io>

* Fix name

* Update default config

* Fix get_length option in batchers

* Update test

* Add comment

* Pass path into Corpus

* Update docstring

* Update schema and configs

* Update config

* Fix test

* Fix paths

* Fix print

* Fix create_train_batches

* [training.read_train] -> [training.train_corpus]

* Update onto-joint config

Co-authored-by: Ines Montani <ines@ines.io>
2020-08-04 15:09:37 +02:00
Ines Montani
934447a611
Merge pull request #5855 from svlandeg/fix/cli-debug 2020-08-03 13:09:20 +02:00
Ines Montani
4c055f0aa7
Add init CLI and init config (#5854)
* Add init CLI and init config draft

* Improve config validation

* Auto-format

* Don't export anything in debug config

* Update docs
2020-08-02 15:18:30 +02:00
svlandeg
6f4e46ee93 Merge remote-tracking branch 'upstream/develop' into fix/cli-debug
# Conflicts:
#	pyproject.toml
#	requirements.txt
#	setup.cfg
2020-08-01 18:38:59 +02:00
svlandeg
9b719dfb1a use divider inbetween steps 2020-07-31 18:06:48 +02:00
svlandeg
51ffc4a166 rename pipe_name to component 2020-07-31 17:58:55 +02:00
svlandeg
878327d38e printing final predictions by default to False 2020-07-31 17:36:32 +02:00
svlandeg
cc2f58a1b0 use data_validation context manager 2020-07-31 16:49:42 +02:00
svlandeg
5fa3235d06 set DATA_VALIDATION to False for debug_model (upgrade thinc) 2020-07-31 15:21:01 +02:00
svlandeg
08d3c36c20 bugfix in train CLI 2020-07-31 15:03:43 +02:00
Sofie Van Landeghem
ca491722ad
The Parser is now a Pipe (2) (#5844)
* moving syntax folder to _parser_internals

* moving nn_parser and transition_system

* move nn_parser and transition_system out of internals folder

* moving nn_parser code into transition_system file

* rename transition_system to transition_parser

* moving parser_model and _state to ml

* move _state back to internals

* The Parser now inherits from Pipe!

* small code fixes

* removing unnecessary imports

* remove link_vectors_to_models

* transition_system to internals folder

* little bit more cleanup

* newlines
2020-07-30 23:30:54 +02:00
svlandeg
0b23594953 pipe_name instead of section in debug_model 2020-07-30 20:06:28 +02:00
Matthew Honnibal
2af741d7e3 Fix train arg 2020-07-29 14:56:01 +02:00
Matthew Honnibal
1784c95827 Clean up link_vectors_to_models unused stuff 2020-07-29 14:01:11 +02:00
Matthew Honnibal
2aff3c4b5a Load vectors in 'spacy train' 2020-07-29 14:00:13 +02:00
Adriane Boyd
191a12d75f
Fix score_weights typo in train CLI (#5835) 2020-07-29 11:04:12 +02:00
Adriane Boyd
0cddb0dbe9
Move timing into Language.evaluate (#5836)
Move timing into `Language.evaluate` so that only the processing is
timing, not processing + scoring. `Language.evaluate` returns
`scores["speed"]` as words per second, which should be identical to how
the speed was added to the scores previously. Also add the speed to the
evaluate CLI output.
2020-07-29 11:02:31 +02:00
Ines Montani
b83ead5bf5
Merge pull request #5824 from svlandeg/fix/textcat-v3 2020-07-28 15:04:25 +02:00
Ines Montani
06a97a8766 Support --opt=value format in CLI config overrides 2020-07-28 13:43:15 +02:00
Ines Montani
0094cb0d04 Remove scores list from config and document 2020-07-28 11:22:24 +02:00
Ines Montani
894e20c466 Merge branch 'develop' into feature/component-scores 2020-07-27 18:14:39 +02:00
svlandeg
61068e0fb1 util function dot_to_object and corresponding unit test 2020-07-27 17:50:12 +02:00
Ines Montani
10b84e1e27 Add flag to toggle sdist creation on package [ci skip] 2020-07-27 16:52:23 +02:00
Adriane Boyd
8bb0507777 Add and update score methods and score weights
Add and update `score` methods, provided `scores`, and default weights
`default_score_weights` for pipeline components.

* `scores` provides all top-level keys returned by `score` (merely informative, similar to `assigns`).
* `default_score_weights` provides the default weights for a default config.
* The keys from `default_score_weights` determine which values will be
shown in the `spacy train` output, so keys with weight `0.0` will be
displayed but not counted toward the overall score.
2020-07-27 14:44:53 +02:00
Adriane Boyd
baf19fd652 Update cats scoring to provide overall score
* Provide top-level score as `attr_score`
* Provide a description of the score as `attr_score_desc`
* Provide all potential scores keys, setting unused keys to `None`
* Update CLI evaluate accordingly
2020-07-27 12:26:10 +02:00
Matthew Honnibal
520d25cb50
Add smart_open dependency to fetch project assets (#5812)
* Use smart_open for project assets

* Fix assets.py

* Update pyproject.toml
2020-07-26 12:15:00 +02:00
Ines Montani
e92df281ce Tidy up, autoformat, add types 2020-07-25 15:01:15 +02:00
Ines Montani
cdbd6ba912
Merge pull request #5798 from explosion/feature/language-data-config 2020-07-25 13:34:49 +02:00
Adriane Boyd
2bcceb80c4
Refactor the Scorer to improve flexibility (#5731)
* Refactor the Scorer to improve flexibility

Refactor the `Scorer` to improve flexibility for arbitrary pipeline
components.

* Individual pipeline components provide their own `evaluate` methods
that score a list of `Example`s and return a dictionary of scores
* `Scorer` is initialized either:
  * with a provided pipeline containing components to be scored
  * with a default pipeline containing the built-in statistical
    components (senter, tagger, morphologizer, parser, ner)
* `Scorer.score` evaluates a list of `Example`s and returns a dictionary
of scores referring to the scores provided by the components in the
pipeline

Significant differences:

* `tags_acc` is renamed to `tag_acc` to be consistent with `token_acc`
and the new `morph_acc`, `pos_acc`, and `lemma_acc`
* Scoring is no longer cumulative: `Scorer.score` scores a list of
examples rather than a single example and does not retain any state
about previously scored examples
* PRF values in the returned scores are no longer multiplied by 100

* Add kwargs to Morphologizer.evaluate

* Create generalized scoring methods in Scorer

* Generalized static scoring methods are added to `Scorer`
  * Methods require an attribute (either on Token or Doc) that is
used to key the returned scores

Naming differences:

* `uas`, `las`, and `las_per_type` in the scores dict are renamed to
`dep_uas`, `dep_las`, and `dep_las_per_type`

Scoring differences:

* `Doc.sents` is now scored as spans rather than on sentence-initial
token positions so that `Doc.sents` and `Doc.ents` can be scored with
the same method (this lowers scores since a single incorrect sentence
start results in two incorrect spans)

* Simplify / extend hasattr check for eval method

* Add hasattr check to tokenizer scoring
* Simplify to hasattr check for component scoring

* Reset Example alignment if docs are set

Reset the Example alignment if either doc is set in case the
tokenization has changed.

* Add PRF tokenization scoring for tokens as spans

Add PRF scores for tokens as character spans. The scores are:

* token_acc: # correct tokens / # gold tokens
* token_p/r/f: PRF for (token.idx, token.idx + len(token))

* Add docstring to Scorer.score_tokenization

* Rename component.evaluate() to component.score()

* Update Scorer API docs

* Update scoring for positive_label in textcat

* Fix TextCategorizer.score kwargs

* Update Language.evaluate docs

* Update score names in default config
2020-07-25 12:53:02 +02:00
Ines Montani
14d7d46f89 Merge branch 'develop' into feature/language-data-config 2020-07-22 22:18:53 +02:00
Ines Montani
d0c6d1efc5
@factories -> factory (#5801) 2020-07-22 17:29:31 +02:00
Ines Montani
2c5bb59909 Use consistent --gpu-id option name 2020-07-22 16:53:41 +02:00
Ines Montani
0fcd352179 Remove omit_extra_lookups 2020-07-22 16:01:17 +02:00
Ines Montani
945f795a3e WIP: move more language data to config 2020-07-22 15:59:37 +02:00
Ines Montani
43b960c01b
Refactor pipeline components, config and language data (#5759)
* Update with WIP

* Update with WIP

* Update with pipeline serialization

* Update types and pipe factories

* Add deep merge, tidy up and add tests

* Fix pipe creation from config

* Don't validate default configs on load

* Update spacy/language.py

Co-authored-by: Ines Montani <ines@ines.io>

* Adjust factory/component meta error

* Clean up factory args and remove defaults

* Add test for failing empty dict defaults

* Update pipeline handling and methods

* provide KB as registry function instead of as object

* small change in test to make functionality more clear

* update example script for EL configuration

* Fix typo

* Simplify test

* Simplify test

* splitting pipes.pyx into separate files

* moving default configs to each component file

* fix batch_size type

* removing default values from component constructors where possible (TODO: test 4725)

* skip instead of xfail

* Add test for config -> nlp with multiple instances

* pipeline.pipes -> pipeline.pipe

* Tidy up, document, remove kwargs

* small cleanup/generalization for Tok2VecListener

* use DEFAULT_UPSTREAM field

* revert to avoid circular imports

* Fix tests

* Replace deprecated arg

* Make model dirs require config

* fix pickling of keyword-only arguments in constructor

* WIP: clean up and integrate full config

* Add helper to handle function args more reliably

Now also includes keyword-only args

* Fix config composition and serialization

* Improve config debugging and add visual diff

* Remove unused defaults and fix type

* Remove pipeline and factories from meta

* Update spacy/default_config.cfg

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/default_config.cfg

* small UX edits

* avoid printing stack trace for debug CLI commands

* Add support for language-specific factories

* specify the section of the config which holds the model to debug

* WIP: add Language.from_config

* Update with language data refactor WIP

* Auto-format

* Add backwards-compat handling for Language.factories

* Update morphologizer.pyx

* Fix morphologizer

* Update and simplify lemmatizers

* Fix Japanese tests

* Port over tagger changes

* Fix Chinese and tests

* Update to latest Thinc

* WIP: xfail first Russian lemmatizer test

* Fix component-specific overrides

* fix nO for output layers in debug_model

* Fix default value

* Fix tests and don't pass objects in config

* Fix deep merging

* Fix lemma lookup data registry

Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed)

* Add types

* Add Vocab.from_config

* Fix typo

* Fix tests

* Make config copying more elegant

* Fix pipe analysis

* Fix lemmatizers and is_base_form

* WIP: move language defaults to config

* Fix morphology type

* Fix vocab

* Remove comment

* Update to latest Thinc

* Add morph rules to config

* Tidy up

* Remove set_morphology option from tagger factory

* Hack use_gpu

* Move [pipeline] to top-level block and make [nlp.pipeline] list

Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them

* Fix use_gpu and resume in CLI

* Auto-format

* Remove resume from config

* Fix formatting and error

* [pipeline] -> [components]

* Fix types

* Fix tagger test: requires set_morphology?

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-07-22 13:42:59 +02:00
Adriane Boyd
ec819fc311
Provide default output for evaluate in CLI (#5784) 2020-07-20 14:42:46 +02:00
Ines Montani
fa3c98f8b3 Update train.py 2020-07-19 13:40:47 +02:00
Ines Montani
796f6c52d1 Merge branch 'develop' into pr/5767 2020-07-19 13:37:46 +02:00
Adriane Boyd
9ee1c54f40
Improve tag map initialization and updating (#5764)
* Improve tag map initialization and updating

Generalize tag map initialization and updating so that the tag map can
be loaded correctly prior to loading a `Corpus` with `spacy debug-data`
and `spacy train`.

* normalize provided tag map as necessary
* use the same method for initializing and updating the tag map

* Replace rather than update tag map

Replace rather than update tag map when loading a custom tag map.
Updating the tag map is problematic due to the sorted list of tag names
and the fact that the tag map will contain lingering/unwanted tags from
the default tag map.

* Update CLI scripts

* Reinitialize cache after loading new tag map

Reinitialize the cache with the right size after loading a new tag map.
2020-07-19 13:13:57 +02:00
Adriane Boyd
d83e3c44c5 Remove corpus-specific morph rules
* Remove corpus-specific morph rules
* Add options similar to tag maps to provide them in the `train` and
`debug-data` CLIs
2020-07-15 19:44:18 +02:00
Ines Montani
872938ec76
Merge pull request #5747 from explosion/feature/refactor-config-args 2020-07-14 00:00:22 +02:00
Ines Montani
5f6f4ff594 Remove object subclassing 2020-07-12 14:03:23 +02:00
Ines Montani
c96535e338 Update command docstrings and docs 2020-07-12 13:53:49 +02:00
Ines Montani
0ab483037c Make debug commands subcommands of spacy debug
Also handle backwards-compatibility so the old commands don't break
2020-07-12 13:53:41 +02:00
Ines Montani
79346853aa Add debug-config command 2020-07-12 12:31:17 +02:00
Ines Montani
3a8632c3fb Hide command from public --help for now
Not sure we want this to be officially documented yet?
2020-07-11 19:21:22 +02:00
Ines Montani
5e683d03fe Allow extra args on pretrain and debug_data 2020-07-11 19:17:59 +02:00
Ines Montani
b7111da1d7 Update config and commands 2020-07-11 13:03:53 +02:00
Ines Montani
f99ce7fbfb Make validation errors more elegant 2020-07-10 23:34:17 +02:00
Ines Montani
fb6f6f584e Replace - with _ in command names
We might as well be nice if user accidentally types --training.use-gpu
2020-07-10 22:34:22 +02:00
Ines Montani
bfa8e11ffa Update and auto-format 2020-07-10 20:52:00 +02:00
Ines Montani
0389c34b81 Merge branch 'develop' into feature/refactor-config-args 2020-07-10 20:51:52 +02:00
Ines Montani
9fe1fa88ad Fix typo 2020-07-10 20:32:37 +02:00
Ines Montani
defe1e7213 Pretty-print config validation errors 2020-07-10 20:01:20 +02:00
Sofie Van Landeghem
de6a32315c
debug-model script (#5749)
* adding debug-model to print the internals for debugging purposes

* expend debug-model script with 4 stages: before, init, train, predict

* avoid enforcing to have a seed in the train script

* small fixes
2020-07-10 19:47:53 +02:00
Ines Montani
a3667394b4 Integrate with latest Thinc and config overrides 2020-07-10 19:47:05 +02:00
Ines Montani
3583ea84d8 Update arg parsing 2020-07-10 18:20:52 +02:00
Ines Montani
73332ddb67 Update CLI commans to use one shared util file 2020-07-10 17:57:40 +02:00
Ines Montani
240e0a62ca Update with WIP 2020-07-10 13:31:27 +02:00
Ines Montani
a60562f208
Update project CLI hashes, directories, skipping (#5741)
* Update project CLI hashes, directories, skipping

* Improve clone success message

* Remove unused context args

* Move project-specific utils to project utils

The hashing/checksum functions may not end up being general-purpose functions and are more designed for the projects, so they shouldn't live in spacy.util

* Improve run help and add workflows

* Add note re: directory checksum speed

* Fix cloning from subdirectories and output messages

* Remove hard-coded dirs
2020-07-09 23:51:18 +02:00
Ines Montani
05e182e421 Update CLI args and docstrings 2020-07-09 19:44:28 +02:00
Adriane Boyd
ac4297ee39
Minor refactor to conversion of output docs (#5718)
Minor refactor of conversion of docs to output format to avoid
duplicate conversion steps.
2020-07-09 19:42:32 +02:00
Matthw Honnibal
7010f1a2be Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-09 19:34:11 +02:00
Matthw Honnibal
77af0a6bb4 Offer option of padding-sensitive batching 2020-07-09 14:50:20 +02:00
Ines Montani
8f9552d9e7
Refactor project CLI (#5732)
* Make project command a submodule

* Update with WIP

* Add helper for joining commands

* Update docstrins, formatting and types

* Update assets and add support for copying local files

* Fix type

* Update success messages
2020-07-09 01:42:51 +02:00
Matthw Honnibal
1b20ffac38 batch_by_words by default 2020-07-08 21:37:06 +02:00
Matthw Honnibal
fb8a5967c1 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-08 15:27:50 +02:00
Ines Montani
0a3d41bb1d
Deprecat model shortcuts and simplify download (#5722) 2020-07-08 14:00:07 +02:00
Matthw Honnibal
42e1109def Support option to not batch by number of words 2020-07-08 11:26:54 +02:00
Ines Montani
8cb7f9ccff
Improve assets and DVC handling (#5719)
* Improve assets and DVC handling

* Remove outdated comment [ci skip]
2020-07-07 20:51:50 +02:00
Ines Montani
fa261d09e8 Add alternative CLI option 2020-07-06 15:57:38 +02:00
Adriane Boyd
c67fc6aa5b
Make docs_to_json backwards-compatible with v2 (#5714)
* In `spacy convert -t json` output the JSON docs wrapped in a list

* Add back token-level `ner` alongside the doc-level `entities`
2020-07-06 14:15:00 +02:00
Ines Montani
412dbb1f38
Remove dead and/or deprecated code (#5710)
* Remove dead and/or deprecated code

* Remove n_threads

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-07-06 13:06:25 +02:00
Sofie Van Landeghem
fcbf899b08
Feature/example only (#5707)
* remove _convert_examples

* fix test_gold, raise TypeError if tuples are used instead of Example's

* throwing proper errors when the wrong type of objects are passed

* fix deprectated format in tests

* fix deprectated format in parser tests

* fix tests for NEL, morph, senter, tagger, textcat

* update regression tests with new Example format

* use make_doc

* more fixes to nlp.update calls

* few more small fixes for rehearse and evaluate

* only import ml_datasets if really necessary
2020-07-06 13:02:36 +02:00
Ines Montani
37c3bb35e2 Auto-format 2020-07-04 16:25:34 +02:00
Ines Montani
99aff16d60 Make argument shortcut consistent 2020-07-04 14:23:32 +02:00
Matthew Honnibal
2bd1bf81f1
Refactor pretrain and support character-based objective for v3 (#5706)
* Start adding character-based stuff

* Start adding character-based objective

* Start adding character-based stuff

* Start adding character-based objective

* Remove outdated comment

* Update pretraining models

* Add/fix character-based multi-task models

* Refactor pretrain and support character-based objective

* Update pretrain config

* Remove unused

* Fix flake8 errors

* Clean up imports

* Format

* Format

* Update Thinc version

* Raise error if vectors objective but no vectors
2020-07-03 17:57:28 +02:00
Ines Montani
84fb3a3fb3 Auto-format and fix tuple 2020-07-03 15:20:10 +02:00
Matthew Honnibal
a902b5f217
Record whether Doc objects are built from known spacing (#5697)
* Tell convert CLI to store user data for Doc

* Remove assert

* Add has_unknwon_spaces flag on Doc

* Do not tokenize docs with unknown spaces in Corpus

* Handle conversion of unknown spaces in Example

* Fixes

* Fixes

* Draft has_known_spaces support in DocBin

* Add test for serialize has_unknown_spaces

* Fix DocBin serialization when has_unknown_spaces

* Use serialization in test
2020-07-03 12:58:16 +02:00
Adriane Boyd
abad56db7d
Add conllu2docs converter (#5704)
Add conllu2docs converter adapted from conllu2json converter
2020-07-03 12:54:32 +02:00